RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 TMEM131LA2VDJ0 1609 aa20.53■□□□□ 0.88
VPS9D1-204ENST00000565023 PPP1R15AO75807 674 aaPredicted RBP20.53■□□□□ 0.88
VPS9D1-204ENST00000565023 SLC26A8Q96RN1 970 aa20.53■□□□□ 0.88
VPS9D1-204ENST00000565023 SPHKAPQ2M3C7 1700 aa20.53■□□□□ 0.88
VPS9D1-204ENST00000565023 NUTM2DQ5VT03 806 aaPredicted RBP20.52■□□□□ 0.88
VPS9D1-204ENST00000565023 PIP4K2BP78356 416 aa20.51■□□□□ 0.87
VPS9D1-204ENST00000565023 RIMS2Q9UQ26 1411 aa20.51■□□□□ 0.87
VPS9D1-204ENST00000565023 HFM1A2PYH4 1435 aa20.5■□□□□ 0.87
VPS9D1-204ENST00000565023 LRRC7Q96NW7 1537 aa20.48■□□□□ 0.87
VPS9D1-204ENST00000565023 ZFYVE9O95405 1425 aa20.46■□□□□ 0.87
VPS9D1-204ENST00000565023 TOM1O60784 492 aa20.46■□□□□ 0.87
VPS9D1-204ENST00000565023 HDGFP51858 240 aaKnown RBP20.44■□□□□ 0.86
VPS9D1-204ENST00000565023 XIRP1Q702N8 1843 aaKnown RBP20.43■□□□□ 0.86
VPS9D1-204ENST00000565023 ZNF326Q5BKZ1 582 aaKnown RBP20.43■□□□□ 0.86
VPS9D1-204ENST00000565023 SLC4A1APQ9BWU0 796 aaKnown RBP20.43■□□□□ 0.86
VPS9D1-204ENST00000565023 CLTCL1P53675 1640 aa20.42■□□□□ 0.86
VPS9D1-204ENST00000565023 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.42■□□□□ 0.86
VPS9D1-204ENST00000565023 RBM33Q96EV2 1170 aaKnown RBP20.42■□□□□ 0.86
VPS9D1-204ENST00000565023 PLEKHG1Q9ULL1 1385 aa20.42■□□□□ 0.86
VPS9D1-204ENST00000565023 KIF1BO60333 1816 aa20.4■□□□□ 0.86
VPS9D1-204ENST00000565023 KCNA6P17658 529 aa20.39■□□□□ 0.85
VPS9D1-204ENST00000565023 FOXD1Q16676 465 aa20.38■□□□□ 0.85
VPS9D1-204ENST00000565023 PROSER2Q86WR7 435 aaPredicted RBP20.38■□□□□ 0.85
VPS9D1-204ENST00000565023 TRPM2O94759 1503 aa20.37■□□□□ 0.85
VPS9D1-204ENST00000565023 HSPA1LP34931 641 aa20.37■□□□□ 0.85
VPS9D1-204ENST00000565023 ALKQ9UM73 1620 aa20.37■□□□□ 0.85
VPS9D1-204ENST00000565023 CHD2O14647 1828 aaKnown RBP20.37■□□□□ 0.85
VPS9D1-204ENST00000565023 TMEM94Q12767 1356 aa20.36■□□□□ 0.85
VPS9D1-204ENST00000565023 NWD1Q149M9 1564 aa20.34■□□□□ 0.85
VPS9D1-204ENST00000565023 ADAMTS13Q76LX8 1427 aa20.33■□□□□ 0.84
VPS9D1-204ENST00000565023 TBX22Q9Y458 520 aa20.32■□□□□ 0.84
VPS9D1-204ENST00000565023 NKTRP30414 1462 aaKnown RBP20.31■□□□□ 0.84
VPS9D1-204ENST00000565023 DIP2AQ14689 1571 aa20.29■□□□□ 0.84
VPS9D1-204ENST00000565023 SETD5Q9C0A6 1442 aa20.29■□□□□ 0.84
VPS9D1-204ENST00000565023 NEXMIFQ5QGS0 1516 aa20.29■□□□□ 0.84
VPS9D1-204ENST00000565023 NRXN3Q9Y4C0 1643 aa20.28■□□□□ 0.84
VPS9D1-204ENST00000565023 MPHOSPH9Q99550 1183 aa20.28■□□□□ 0.84
VPS9D1-204ENST00000565023 C14orf37Q86TY3 774 aa20.27■□□□□ 0.84
VPS9D1-204ENST00000565023 MSH6P52701 1360 aa20.25■□□□□ 0.83
VPS9D1-204ENST00000565023 AMOTL2Q9Y2J4 779 aa20.24■□□□□ 0.83
VPS9D1-204ENST00000565023 PTPRUQ92729 1446 aa20.24■□□□□ 0.83
VPS9D1-204ENST00000565023 SETBP1Q9Y6X0 1596 aa20.24■□□□□ 0.83
VPS9D1-204ENST00000565023 RAB3GAP2Q9H2M9 1393 aa20.23■□□□□ 0.83
VPS9D1-204ENST00000565023 CCDC144AA2RUR9 1427 aa20.22■□□□□ 0.83
VPS9D1-204ENST00000565023 PIK3R4Q99570 1358 aa20.21■□□□□ 0.83
VPS9D1-204ENST00000565023 PPLO60437 1756 aa20.21■□□□□ 0.83
VPS9D1-204ENST00000565023 RGL3Q3MIN7 710 aa20.21■□□□□ 0.83
VPS9D1-204ENST00000565023 METP08581 1390 aa20.2■□□□□ 0.82
VPS9D1-204ENST00000565023 ROBO1Q9Y6N7 1651 aa20.19■□□□□ 0.82
VPS9D1-204ENST00000565023 PHF23Q9BUL5 403 aaPredicted RBP20.19■□□□□ 0.82
VPS9D1-204ENST00000565023 VGFO15240 615 aaPredicted RBP20.18■□□□□ 0.82
VPS9D1-204ENST00000565023 XRN1Q8IZH2 1706 aaKnown RBP20.18■□□□□ 0.82
VPS9D1-204ENST00000565023 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.17■□□□□ 0.82
VPS9D1-204ENST00000565023 RPGRIP1LQ68CZ1 1315 aa20.15■□□□□ 0.82
VPS9D1-204ENST00000565023 FAM135BQ49AJ0 1406 aa20.14■□□□□ 0.81
VPS9D1-204ENST00000565023 SLAIN2Q9P270 581 aa20.14■□□□□ 0.81
VPS9D1-204ENST00000565023 SETD1AO15047 1707 aaKnown RBP20.13■□□□□ 0.81
VPS9D1-204ENST00000565023 ATF3P18847 181 aa20.13■□□□□ 0.81
VPS9D1-204ENST00000565023 ACIN1Q9UKV3 1341 aaKnown RBP20.12■□□□□ 0.81
VPS9D1-204ENST00000565023 IFT172Q9UG01 1749 aa20.11■□□□□ 0.81
VPS9D1-204ENST00000565023 C19orf44Q9H6X5 657 aa20.11■□□□□ 0.81
VPS9D1-204ENST00000565023 RGS17Q9UGC6 210 aaPredicted RBP20.11■□□□□ 0.81
VPS9D1-204ENST00000565023 SPATA31E1Q6ZUB1 1445 aa20.1■□□□□ 0.81
VPS9D1-204ENST00000565023 NCOA3Q9Y6Q9 1424 aa20.1■□□□□ 0.81
VPS9D1-204ENST00000565023 ADGRF5Q8IZF2 1346 aa20.1■□□□□ 0.81
VPS9D1-204ENST00000565023 PHLPP1O60346 1717 aa20.1■□□□□ 0.81
VPS9D1-204ENST00000565023 CADPS2Q86UW7 1296 aa20.09■□□□□ 0.81
VPS9D1-204ENST00000565023 NALCNQ8IZF0 1738 aa20.07■□□□□ 0.8
VPS9D1-204ENST00000565023 ANKRD30BQ9BXX2 1392 aa20.05■□□□□ 0.8
VPS9D1-204ENST00000565023 STK26Q9P289 416 aa20.04■□□□□ 0.8
VPS9D1-204ENST00000565023 ROBO2Q9HCK4 1378 aa20.03■□□□□ 0.8
VPS9D1-204ENST00000565023 ADGRL3Q9HAR2 1447 aa20.02■□□□□ 0.8
VPS9D1-204ENST00000565023 TMEM132EQ6IEE7 984 aa20.01■□□□□ 0.79
VPS9D1-204ENST00000565023 DCCP43146 1447 aa20■□□□□ 0.79
VPS9D1-204ENST00000565023 PTCH1Q13635 1447 aa20■□□□□ 0.79
VPS9D1-204ENST00000565023 BRINP3Q76B58 766 aa19.99■□□□□ 0.79
VPS9D1-204ENST00000565023 MST1RQ04912 1400 aa19.99■□□□□ 0.79
VPS9D1-204ENST00000565023 COL16A1Q07092 1604 aaPredicted RBP19.98■□□□□ 0.79
VPS9D1-204ENST00000565023 ASXL1Q8IXJ9 1541 aa19.98■□□□□ 0.79
VPS9D1-204ENST00000565023 PIK3C2GO75747 1445 aa19.98■□□□□ 0.79
VPS9D1-204ENST00000565023 HRCP23327 699 aa19.97■□□□□ 0.79
VPS9D1-204ENST00000565023 KDM2AQ9Y2K7 1162 aa19.97■□□□□ 0.79
VPS9D1-204ENST00000565023 CFAP70Q5T0N1 1121 aa19.95■□□□□ 0.78
VPS9D1-204ENST00000565023 WAPLQ7Z5K2 1190 aa19.95■□□□□ 0.78
VPS9D1-204ENST00000565023 DDX17Q92841 729 aaKnown RBP19.95■□□□□ 0.78
VPS9D1-204ENST00000565023 AHDC1Q5TGY3 1603 aaPredicted RBP19.94■□□□□ 0.78
VPS9D1-204ENST00000565023 JCADQ9P266 1359 aa19.94■□□□□ 0.78
VPS9D1-204ENST00000565023 MYOM2P54296 1465 aa19.93■□□□□ 0.78
VPS9D1-204ENST00000565023 LRPPRCP42704 1394 aaKnown RBP19.93■□□□□ 0.78
VPS9D1-204ENST00000565023 KNDC1Q76NI1 1749 aa19.93■□□□□ 0.78
VPS9D1-204ENST00000565023 POTEAQ6S8J7 498 aa19.92■□□□□ 0.78
VPS9D1-204ENST00000565023 DCAF11Q8TEB1 546 aa19.92■□□□□ 0.78
VPS9D1-204ENST00000565023 SRCAPQ6ZRS2 3230 aa19.91■□□□□ 0.78
VPS9D1-204ENST00000565023 NUTM2FA1L443 756 aa19.91■□□□□ 0.78
VPS9D1-204ENST00000565023 PLEKHH1Q9ULM0 1364 aa19.91■□□□□ 0.78
VPS9D1-204ENST00000565023 PRAG1Q86YV5 1406 aa19.91■□□□□ 0.78
VPS9D1-204ENST00000565023 YTHDC2Q9H6S0 1430 aaKnown RBP19.91■□□□□ 0.78
VPS9D1-204ENST00000565023 C1orf167Q5SNV9 1468 aa19.91■□□□□ 0.78
VPS9D1-204ENST00000565023 LAMC1P11047 1609 aa19.91■□□□□ 0.78
VPS9D1-204ENST00000565023 NHSL1Q5SYE7 1610 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms