RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 EYA1Q99502 592 aa10.69□□□□□ -0.7
VPS35-204ENST00000563884 MTRQ99707 1265 aa10.69□□□□□ -0.7
VPS35-204ENST00000563884 IL21Q9HBE4 155 aa10.68□□□□□ -0.7
VPS35-204ENST00000563884 KIF21AQ7Z4S6 1674 aa10.67□□□□□ -0.7
VPS35-204ENST00000563884 SEMA3EO15041 775 aa10.67□□□□□ -0.7
VPS35-204ENST00000563884 APLP1P51693 650 aa10.67□□□□□ -0.7
VPS35-204ENST00000563884 SMARCA2P51531 1590 aa10.67□□□□□ -0.7
VPS35-204ENST00000563884 KDM2AQ9Y2K7 1162 aa10.66□□□□□ -0.7
VPS35-204ENST00000563884 NCAPD3P42695 1498 aa10.66□□□□□ -0.7
VPS35-204ENST00000563884 LAMC3Q9Y6N6 1575 aa10.65□□□□□ -0.7
VPS35-204ENST00000563884 NESP48681 1621 aa10.65□□□□□ -0.7
VPS35-204ENST00000563884 VSIG10Q8N0Z9 540 aa10.64□□□□□ -0.71
VPS35-204ENST00000563884 RBM46Q8TBY0 533 aaKnown RBP10.64□□□□□ -0.71
VPS35-204ENST00000563884 HMGXB3Q12766 1538 aa10.63□□□□□ -0.71
VPS35-204ENST00000563884 ZNF516Q92618 1163 aa10.63□□□□□ -0.71
VPS35-204ENST00000563884 FCHSD2O94868 740 aa10.62□□□□□ -0.71
VPS35-204ENST00000563884 DNAJB2P25686 324 aa10.62□□□□□ -0.71
VPS35-204ENST00000563884 ADGRG1Q9Y653 693 aa10.62□□□□□ -0.71
VPS35-204ENST00000563884 RIMBP3CA6NJZ7 1639 aa10.62□□□□□ -0.71
VPS35-204ENST00000563884 RIMBP3BA6NNM3 1639 aa10.62□□□□□ -0.71
VPS35-204ENST00000563884 RIMBP3Q9UFD9 1639 aa10.62□□□□□ -0.71
VPS35-204ENST00000563884 COPS2P61201 443 aa10.61□□□□□ -0.71
VPS35-204ENST00000563884 FAM161AQ3B820 660 aa10.61□□□□□ -0.71
VPS35-204ENST00000563884 PRR14Q9BWN1 585 aa10.59□□□□□ -0.71
VPS35-204ENST00000563884 RCCD1A6NED2 376 aa10.58□□□□□ -0.72
VPS35-204ENST00000563884 PPP1R18Q6NYC8 613 aa10.58□□□□□ -0.72
VPS35-204ENST00000563884 SMYD5Q6GMV2 418 aa10.57□□□□□ -0.72
VPS35-204ENST00000563884 TMEM134Q9H6X4 195 aa10.57□□□□□ -0.72
VPS35-204ENST00000563884 NKX2-3Q8TAU0 364 aa10.56□□□□□ -0.72
VPS35-204ENST00000563884 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.56□□□□□ -0.72
VPS35-204ENST00000563884 PCDHB3Q9Y5E6 796 aa10.56□□□□□ -0.72
VPS35-204ENST00000563884 TESPA1A2RU30 521 aaPredicted RBP10.55□□□□□ -0.72
VPS35-204ENST00000563884 RBM26Q5T8P6 1007 aaKnown RBP10.55□□□□□ -0.72
VPS35-204ENST00000563884 PRKD2Q9BZL6 878 aa10.55□□□□□ -0.72
VPS35-204ENST00000563884 PDS5BQ9NTI5 1447 aa10.55□□□□□ -0.72
VPS35-204ENST00000563884 ZPR1O75312 459 aa10.53□□□□□ -0.72
VPS35-204ENST00000563884 GGCXP38435 758 aa10.53□□□□□ -0.72
VPS35-204ENST00000563884 HIC1Q14526 733 aa10.53□□□□□ -0.72
VPS35-204ENST00000563884 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.52□□□□□ -0.73
VPS35-204ENST00000563884 OATP04181 439 aa10.52□□□□□ -0.73
VPS35-204ENST00000563884 KMT5BQ4FZB7 885 aa10.52□□□□□ -0.73
VPS35-204ENST00000563884 Q6ZNB5 142 aa10.52□□□□□ -0.73
VPS35-204ENST00000563884 WDR62O43379 1518 aa10.52□□□□□ -0.73
VPS35-204ENST00000563884 ATAD2BQ9ULI0 1458 aa10.51□□□□□ -0.73
VPS35-204ENST00000563884 BLOC1S3Q6QNY0 202 aa10.51□□□□□ -0.73
VPS35-204ENST00000563884 CFHP08603 1231 aa10.5□□□□□ -0.73
VPS35-204ENST00000563884 PXYLP1Q8TE99 480 aa10.5□□□□□ -0.73
VPS35-204ENST00000563884 MRC2Q9UBG0 1479 aa10.49□□□□□ -0.73
VPS35-204ENST00000563884 GNPATO15228 680 aa10.48□□□□□ -0.73
VPS35-204ENST00000563884 ACTN4O43707 911 aaKnown RBP10.48□□□□□ -0.73
VPS35-204ENST00000563884 GFRA3O60609 400 aa10.48□□□□□ -0.73
VPS35-204ENST00000563884 V9GY48 417 aaPredicted RBP10.48□□□□□ -0.73
VPS35-204ENST00000563884 LAPTM4AQ15012 233 aa10.47□□□□□ -0.73
VPS35-204ENST00000563884 ARHGEF11O15085 1522 aa10.47□□□□□ -0.73
VPS35-204ENST00000563884 SLC10A3P09131 477 aa10.46□□□□□ -0.73
VPS35-204ENST00000563884 METTL3Q86U44 580 aaKnown RBP10.46□□□□□ -0.73
VPS35-204ENST00000563884 TMUB1Q9BVT8 246 aa10.46□□□□□ -0.73
VPS35-204ENST00000563884 FECHP22830 423 aa10.45□□□□□ -0.74
VPS35-204ENST00000563884 RSPH4AQ5TD94 716 aa10.45□□□□□ -0.74
VPS35-204ENST00000563884 BAZ1BQ9UIG0 1483 aaKnown RBP10.44□□□□□ -0.74
VPS35-204ENST00000563884 TLL1O43897 1013 aa10.44□□□□□ -0.74
VPS35-204ENST00000563884 SMARCA4P51532 1647 aa10.44□□□□□ -0.74
VPS35-204ENST00000563884 GPR37O15354 613 aa10.41□□□□□ -0.74
VPS35-204ENST00000563884 NR1I2O75469 434 aa10.41□□□□□ -0.74
VPS35-204ENST00000563884 GPIHBP1Q8IV16 184 aa10.41□□□□□ -0.74
VPS35-204ENST00000563884 RNF223E7ERA6 249 aa10.4□□□□□ -0.74
VPS35-204ENST00000563884 RDH13Q8NBN7 331 aa10.39□□□□□ -0.75
VPS35-204ENST00000563884 DAXXQ9UER7 740 aaPredicted RBP10.39□□□□□ -0.75
VPS35-204ENST00000563884 NRG2O14511 850 aaPredicted RBP10.38□□□□□ -0.75
VPS35-204ENST00000563884 S1PR4O95977 384 aa10.38□□□□□ -0.75
VPS35-204ENST00000563884 NLRP7Q8WX94 980 aa10.38□□□□□ -0.75
VPS35-204ENST00000563884 DDX11L8A8MPP1 907 aa10.37□□□□□ -0.75
VPS35-204ENST00000563884 ADH1BP00325 375 aa10.37□□□□□ -0.75
VPS35-204ENST00000563884 PUS10Q3MIT2 529 aaKnown RBP10.37□□□□□ -0.75
VPS35-204ENST00000563884 PDZRN3Q9UPQ7 1066 aa10.37□□□□□ -0.75
VPS35-204ENST00000563884 PPEF1O14829 653 aaPredicted RBP10.36□□□□□ -0.75
VPS35-204ENST00000563884 SLC19A1P41440 591 aa10.36□□□□□ -0.75
VPS35-204ENST00000563884 TRAF7Q6Q0C0 670 aa10.35□□□□□ -0.75
VPS35-204ENST00000563884 SCUBE3Q8IX30 993 aa10.35□□□□□ -0.75
VPS35-204ENST00000563884 ANKLE1Q8NAG6 615 aa10.35□□□□□ -0.75
VPS35-204ENST00000563884 PEG3Q9GZU2 1588 aa10.35□□□□□ -0.75
VPS35-204ENST00000563884 TULP1O00294 542 aaPredicted RBP10.34□□□□□ -0.75
VPS35-204ENST00000563884 SULF1Q8IWU6 871 aa10.33□□□□□ -0.76
VPS35-204ENST00000563884 SLC6A16Q9GZN6 736 aa10.33□□□□□ -0.76
VPS35-204ENST00000563884 CEP164Q9UPV0 1460 aa10.33□□□□□ -0.76
VPS35-204ENST00000563884 PHOX2BQ99453 314 aa10.32□□□□□ -0.76
VPS35-204ENST00000563884 SPSB2Q99619 263 aa10.31□□□□□ -0.76
VPS35-204ENST00000563884 FUT2Q10981 343 aa10.3□□□□□ -0.76
VPS35-204ENST00000563884 EMID1Q96A84 441 aaPredicted RBP10.3□□□□□ -0.76
VPS35-204ENST00000563884 LCE2BO14633 110 aa10.29□□□□□ -0.76
VPS35-204ENST00000563884 ATP6V1AP38606 617 aa10.29□□□□□ -0.76
VPS35-204ENST00000563884 SPRYD7Q5W111 196 aa10.29□□□□□ -0.76
VPS35-204ENST00000563884 CYB5RLQ6IPT4 315 aa10.29□□□□□ -0.76
VPS35-204ENST00000563884 SLC24A1O60721 1099 aa10.28□□□□□ -0.76
VPS35-204ENST00000563884 GCGRP47871 477 aa10.28□□□□□ -0.76
VPS35-204ENST00000563884 MORN1Q5T089 497 aa10.28□□□□□ -0.76
VPS35-204ENST00000563884 ARAP1Q96P48 1450 aa10.28□□□□□ -0.76
VPS35-204ENST00000563884 CADPSQ9ULU8 1353 aa10.27□□□□□ -0.76
VPS35-204ENST00000563884 LIAT1Q6ZQX7 453 aa10.27□□□□□ -0.77
VPS35-204ENST00000563884 ZNF598Q86UK7 904 aaKnown RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms