RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 AHDC1Q5TGY3 1603 aaPredicted RBP16.59■□□□□ 0.25
SF3B3-204ENST00000563739 RRP7BPQ9NSQ0 103 aa16.59■□□□□ 0.25
SF3B3-204ENST00000563739 EID1Q9Y6B2 187 aa16.58■□□□□ 0.24
SF3B3-204ENST00000563739 FGD6Q6ZV73 1430 aa16.58■□□□□ 0.24
SF3B3-204ENST00000563739 ADGRL2O95490 1459 aa16.58■□□□□ 0.24
SF3B3-204ENST00000563739 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.58■□□□□ 0.24
SF3B3-204ENST00000563739 ADAMTS13Q76LX8 1427 aa16.55■□□□□ 0.24
SF3B3-204ENST00000563739 JCADQ9P266 1359 aa16.55■□□□□ 0.24
SF3B3-204ENST00000563739 PLEKHG1Q9ULL1 1385 aa16.55■□□□□ 0.24
SF3B3-204ENST00000563739 PROSER2Q86WR7 435 aaPredicted RBP16.55■□□□□ 0.24
SF3B3-204ENST00000563739 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.55■□□□□ 0.242e-8■■■□□ 15.2
SF3B3-204ENST00000563739 UNC13BO14795 1591 aa16.53■□□□□ 0.24
SF3B3-204ENST00000563739 RPRD2Q5VT52 1461 aaKnown RBP16.53■□□□□ 0.24
SF3B3-204ENST00000563739 E9PCH4 1651 aa16.53■□□□□ 0.24
SF3B3-204ENST00000563739 MSH6P52701 1360 aa16.52■□□□□ 0.24
SF3B3-204ENST00000563739 RIMS2Q9UQ26 1411 aa16.52■□□□□ 0.23
SF3B3-204ENST00000563739 NRXN3Q9Y4C0 1643 aa16.52■□□□□ 0.23
SF3B3-204ENST00000563739 KANK1Q14678 1352 aa16.51■□□□□ 0.23
SF3B3-204ENST00000563739 XRN1Q8IZH2 1706 aaKnown RBP16.5■□□□□ 0.23
SF3B3-204ENST00000563739 SLAIN2Q9P270 581 aa16.5■□□□□ 0.23
SF3B3-204ENST00000563739 NHSL1Q5SYE7 1610 aa16.49■□□□□ 0.23
SF3B3-204ENST00000563739 LOC105371045A0A1W2PR82 267 aa16.49■□□□□ 0.23
SF3B3-204ENST00000563739 PTPRUQ92729 1446 aa16.49■□□□□ 0.23
SF3B3-204ENST00000563739 ANKRD30AQ9BXX3 1397 aa16.49■□□□□ 0.23
SF3B3-204ENST00000563739 NCOA3Q9Y6Q9 1424 aa16.48■□□□□ 0.23
SF3B3-204ENST00000563739 UPF1Q92900 1129 aaKnown RBP eCLIP16.47■□□□□ 0.23
SF3B3-204ENST00000563739 CHIC2Q9UKJ5 165 aa16.47■□□□□ 0.23
SF3B3-204ENST00000563739 STAG3Q9UJ98 1225 aa16.46■□□□□ 0.23
SF3B3-204ENST00000563739 SLC52A1Q9NWF4 448 aa16.45■□□□□ 0.22
SF3B3-204ENST00000563739 IQGAP3Q86VI3 1631 aa16.44■□□□□ 0.22
SF3B3-204ENST00000563739 ASXL1Q8IXJ9 1541 aa16.44■□□□□ 0.22
SF3B3-204ENST00000563739 CDK12Q9NYV4 1490 aaPredicted RBP16.43■□□□□ 0.22
SF3B3-204ENST00000563739 ANKRD50Q9ULJ7 1429 aa16.43■□□□□ 0.22
SF3B3-204ENST00000563739 SPATA31A6Q5VVP1 1343 aa16.43■□□□□ 0.22
SF3B3-204ENST00000563739 TBX22Q9Y458 520 aa16.42■□□□□ 0.22
SF3B3-204ENST00000563739 TRPM2O94759 1503 aa16.41■□□□□ 0.22
SF3B3-204ENST00000563739 NALCNQ8IZF0 1738 aa16.41■□□□□ 0.22
SF3B3-204ENST00000563739 RGS12O14924 1447 aa16.4■□□□□ 0.22
SF3B3-204ENST00000563739 MST1RQ04912 1400 aa16.4■□□□□ 0.22
SF3B3-204ENST00000563739 PIK3R4Q99570 1358 aa16.39■□□□□ 0.21
SF3B3-204ENST00000563739 SETBP1Q9Y6X0 1596 aa16.39■□□□□ 0.21
SF3B3-204ENST00000563739 DCCP43146 1447 aa16.38■□□□□ 0.21
SF3B3-204ENST00000563739 SETD5Q9C0A6 1442 aa16.38■□□□□ 0.21
SF3B3-204ENST00000563739 BRINP3Q76B58 766 aa16.38■□□□□ 0.21
SF3B3-204ENST00000563739 LAMC1P11047 1609 aa16.37■□□□□ 0.21
SF3B3-204ENST00000563739 TRIM52Q96A61 297 aa16.37■□□□□ 0.21
SF3B3-204ENST00000563739 NUTM2DQ5VT03 806 aaPredicted RBP16.36■□□□□ 0.21
SF3B3-204ENST00000563739 SPHKAPQ2M3C7 1700 aa16.34■□□□□ 0.21
SF3B3-204ENST00000563739 ZNF772Q68DY9 489 aaPredicted RBP16.34■□□□□ 0.21
SF3B3-204ENST00000563739 C19orf44Q9H6X5 657 aa16.33■□□□□ 0.2
SF3B3-204ENST00000563739 AFF2P51816 1311 aa16.32■□□□□ 0.2
SF3B3-204ENST00000563739 CADPS2Q86UW7 1296 aa16.32■□□□□ 0.2
SF3B3-204ENST00000563739 PNPLA6Q8IY17 1366 aa16.32■□□□□ 0.2
SF3B3-204ENST00000563739 BCANQ96GW7 911 aa16.32■□□□□ 0.2
SF3B3-204ENST00000563739 PPP1R15AO75807 674 aaPredicted RBP16.31■□□□□ 0.2
SF3B3-204ENST00000563739 EP400Q96L91 3159 aa16.31■□□□□ 0.2
SF3B3-204ENST00000563739 NEXMIFQ5QGS0 1516 aa16.3■□□□□ 0.2
SF3B3-204ENST00000563739 ADGRL3Q9HAR2 1447 aa16.29■□□□□ 0.2
SF3B3-204ENST00000563739 METP08581 1390 aa16.29■□□□□ 0.2
SF3B3-204ENST00000563739 MEX3CQ5U5Q3 659 aaKnown RBP16.29■□□□□ 0.2
SF3B3-204ENST00000563739 AMOTL2Q9Y2J4 779 aa16.29■□□□□ 0.2
SF3B3-204ENST00000563739 CLTCL1P53675 1640 aa16.29■□□□□ 0.2
SF3B3-204ENST00000563739 RXRBP28702 533 aa16.28■□□□□ 0.2
SF3B3-204ENST00000563739 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.28■□□□□ 0.2
SF3B3-204ENST00000563739 DDX17Q92841 729 aaKnown RBP16.28■□□□□ 0.2
SF3B3-204ENST00000563739 COL22A1Q8NFW1 1626 aaPredicted RBP16.27■□□□□ 0.19
SF3B3-204ENST00000563739 NUTM2BA6NNL0 878 aaPredicted RBP16.26■□□□□ 0.19
SF3B3-204ENST00000563739 NUTM2EB1AL46 878 aaPredicted RBP16.26■□□□□ 0.19
SF3B3-204ENST00000563739 ATF3P18847 181 aa16.26■□□□□ 0.19
SF3B3-204ENST00000563739 NUTM2AQ8IVF1 878 aaPredicted RBP16.26■□□□□ 0.19
SF3B3-204ENST00000563739 ROCK1Q13464 1354 aa16.26■□□□□ 0.19
SF3B3-204ENST00000563739 C14orf37Q86TY3 774 aa16.25■□□□□ 0.19
SF3B3-204ENST00000563739 CHGAP10645 457 aaKnown RBP16.24■□□□□ 0.19
SF3B3-204ENST00000563739 C1orf167Q5SNV9 1468 aa16.23■□□□□ 0.19
SF3B3-204ENST00000563739 PRAG1Q86YV5 1406 aa16.22■□□□□ 0.19
SF3B3-204ENST00000563739 FAM50AQ14320 339 aaKnown RBP16.22■□□□□ 0.19
SF3B3-204ENST00000563739 HDGFP51858 240 aaKnown RBP16.21■□□□□ 0.19
SF3B3-204ENST00000563739 MARF1Q9Y4F3 1742 aaKnown RBP16.21■□□□□ 0.19
SF3B3-204ENST00000563739 PTCH1Q13635 1447 aa16.19■□□□□ 0.18
SF3B3-204ENST00000563739 MYOM2P54296 1465 aa16.19■□□□□ 0.18
SF3B3-204ENST00000563739 C8orf37Q96NL8 207 aa16.19■□□□□ 0.18
SF3B3-204ENST00000563739 ATRNO75882 1429 aa16.19■□□□□ 0.18
SF3B3-204ENST00000563739 NUP155O75694 1391 aa16.18■□□□□ 0.18
SF3B3-204ENST00000563739 RBM6P78332 1123 aaKnown RBP16.18■□□□□ 0.18
SF3B3-204ENST00000563739 ROBO2Q9HCK4 1378 aa16.17■□□□□ 0.18
SF3B3-204ENST00000563739 QTRT2Q9H974 415 aaKnown RBP16.17■□□□□ 0.18
SF3B3-204ENST00000563739 LRRC59Q96AG4 307 aaKnown RBP16.16■□□□□ 0.18
SF3B3-204ENST00000563739 KIF1BO60333 1816 aa16.16■□□□□ 0.18
SF3B3-204ENST00000563739 SOS2Q07890 1332 aaPredicted RBP16.16■□□□□ 0.18
SF3B3-204ENST00000563739 APLP2Q06481 763 aa16.15■□□□□ 0.18
SF3B3-204ENST00000563739 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.15■□□□□ 0.18
SF3B3-204ENST00000563739 PXDNQ92626 1479 aa16.15■□□□□ 0.18
SF3B3-204ENST00000563739 PPLO60437 1756 aa16.14■□□□□ 0.17
SF3B3-204ENST00000563739 CDC42BPGQ6DT37 1551 aa16.13■□□□□ 0.17
SF3B3-204ENST00000563739 BCL9LQ86UU0 1499 aa16.13■□□□□ 0.17
SF3B3-204ENST00000563739 GLI3P10071 1580 aa16.13■□□□□ 0.17
SF3B3-204ENST00000563739 ORAI2Q96SN7 254 aa16.12■□□□□ 0.17
SF3B3-204ENST00000563739 ATAD2Q6PL18 1390 aa16.12■□□□□ 0.17
SF3B3-204ENST00000563739 BRWD3Q6RI45 1802 aa16.11■□□□□ 0.17
SF3B3-204ENST00000563739 ADAMTS2O95450 1211 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms