RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 RPGRIP1LQ68CZ1 1315 aa14.48□□□□□ -0.09
SMG1-208ENST00000563448 STAC3Q96MF2 364 aa14.48□□□□□ -0.09
SMG1-208ENST00000563448 NRXN1Q9ULB1 1477 aa14.47□□□□□ -0.09
SMG1-208ENST00000563448 NLRP1Q9C000 1473 aa14.47□□□□□ -0.09
SMG1-208ENST00000563448 LAMC1P11047 1609 aa14.46□□□□□ -0.09
SMG1-208ENST00000563448 ZNF316A6NFI3 1004 aaPredicted RBP14.45□□□□□ -0.1
SMG1-208ENST00000563448 ADGRF5Q8IZF2 1346 aa14.45□□□□□ -0.1
SMG1-208ENST00000563448 ZNF142P52746 1687 aaPredicted RBP14.45□□□□□ -0.1
SMG1-208ENST00000563448 PTPRMP28827 1452 aa14.44□□□□□ -0.1
SMG1-208ENST00000563448 STAG3Q9UJ98 1225 aa14.44□□□□□ -0.1
SMG1-208ENST00000563448 IQGAP1P46940 1657 aa14.43□□□□□ -0.1
SMG1-208ENST00000563448 ZFYVE9O95405 1425 aa14.42□□□□□ -0.1
SMG1-208ENST00000563448 CEP170BQ9Y4F5 1589 aaPredicted RBP14.42□□□□□ -0.1
SMG1-208ENST00000563448 NUTM2DQ5VT03 806 aaPredicted RBP14.42□□□□□ -0.1
SMG1-208ENST00000563448 PIK3C2GO75747 1445 aa14.42□□□□□ -0.1
SMG1-208ENST00000563448 NBPF1Q3BBV0 1214 aa14.41□□□□□ -0.1
SMG1-208ENST00000563448 RIMS2Q9UQ26 1411 aa14.41□□□□□ -0.1
SMG1-208ENST00000563448 ROCK2O75116 1388 aaKnown RBP14.41□□□□□ -0.1
SMG1-208ENST00000563448 POLR1AO95602 1720 aaPredicted RBP14.4□□□□□ -0.1
SMG1-208ENST00000563448 GPRASP1Q5JY77 1395 aa14.4□□□□□ -0.1
SMG1-208ENST00000563448 VGFO15240 615 aaPredicted RBP14.4□□□□□ -0.1
SMG1-208ENST00000563448 HIRIP3Q9BW71 556 aaPredicted RBP14.4□□□□□ -0.1
SMG1-208ENST00000563448 HSPA5P11021 654 aaKnown RBP14.39□□□□□ -0.11
SMG1-208ENST00000563448 SETD1AO15047 1707 aaKnown RBP14.39□□□□□ -0.11
SMG1-208ENST00000563448 SETBP1Q9Y6X0 1596 aa14.39□□□□□ -0.11
SMG1-208ENST00000563448 EIF4G2P78344 907 aaKnown RBP eCLIP14.39□□□□□ -0.11
SMG1-208ENST00000563448 CARD11Q9BXL7 1154 aa14.39□□□□□ -0.11
SMG1-208ENST00000563448 NRXN3Q9Y4C0 1643 aa14.38□□□□□ -0.11
SMG1-208ENST00000563448 CFAP70Q5T0N1 1121 aa14.38□□□□□ -0.11
SMG1-208ENST00000563448 SLIT1O75093 1534 aa14.37□□□□□ -0.11
SMG1-208ENST00000563448 USP47Q96K76 1375 aa14.37□□□□□ -0.11
SMG1-208ENST00000563448 TMEM2Q9UHN6 1383 aa14.37□□□□□ -0.11
SMG1-208ENST00000563448 ARHGAP23Q9P227 1491 aa14.36□□□□□ -0.11
SMG1-208ENST00000563448 KDM4FA0A1W2PPD8 638 aa14.36□□□□□ -0.11
SMG1-208ENST00000563448 C14orf93Q9H972 538 aaKnown RBP14.36□□□□□ -0.11
SMG1-208ENST00000563448 ADGRB1O14514 1584 aa14.35□□□□□ -0.11
SMG1-208ENST00000563448 ALKQ9UM73 1620 aa14.35□□□□□ -0.11
SMG1-208ENST00000563448 ASXL1Q8IXJ9 1541 aa14.34□□□□□ -0.11
SMG1-208ENST00000563448 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.34□□□□□ -0.11
SMG1-208ENST00000563448 SCAF11Q99590 1463 aaKnown RBP14.32□□□□□ -0.12
SMG1-208ENST00000563448 ARHGEF28Q8N1W1 1705 aaKnown RBP14.32□□□□□ -0.12
SMG1-208ENST00000563448 THEMISQ8N1K5 641 aaPredicted RBP14.32□□□□□ -0.12
SMG1-208ENST00000563448 HDGFP51858 240 aaKnown RBP14.32□□□□□ -0.12
SMG1-208ENST00000563448 SENP3Q9H4L4 574 aaPredicted RBP14.32□□□□□ -0.12
SMG1-208ENST00000563448 LTKP29376 864 aa14.31□□□□□ -0.12
SMG1-208ENST00000563448 ST20-MTHFSA0A0A6YYL1 179 aa14.29□□□□□ -0.12
SMG1-208ENST00000563448 TMEM132EQ6IEE7 984 aa14.29□□□□□ -0.12
SMG1-208ENST00000563448 TXNDC2Q86VQ3 553 aa14.29□□□□□ -0.12
SMG1-208ENST00000563448 QRICH2Q9H0J4 1663 aa14.28□□□□□ -0.12
SMG1-208ENST00000563448 PLEKHG1Q9ULL1 1385 aa14.28□□□□□ -0.12
SMG1-208ENST00000563448 C11orf95C9JLR9 678 aaPredicted RBP14.27□□□□□ -0.12
SMG1-208ENST00000563448 AEBP2Q6ZN18 517 aaPredicted RBP14.27□□□□□ -0.12
SMG1-208ENST00000563448 EID1Q9Y6B2 187 aa14.27□□□□□ -0.12
SMG1-208ENST00000563448 KNDC1Q76NI1 1749 aa14.27□□□□□ -0.13
SMG1-208ENST00000563448 ADAMTS13Q76LX8 1427 aa14.26□□□□□ -0.13
SMG1-208ENST00000563448 MED14O60244 1454 aa14.25□□□□□ -0.13
SMG1-208ENST00000563448 EIF3AQ14152 1382 aaKnown RBP14.25□□□□□ -0.13
SMG1-208ENST00000563448 WASHC2AQ641Q2 1341 aa14.24□□□□□ -0.13
SMG1-208ENST00000563448 YTHDC2Q9H6S0 1430 aaKnown RBP14.24□□□□□ -0.13
SMG1-208ENST00000563448 DIP2AQ14689 1571 aa14.24□□□□□ -0.13
SMG1-208ENST00000563448 TESK2Q96S53 571 aa14.24□□□□□ -0.13
SMG1-208ENST00000563448 TRAK1Q9UPV9 953 aa14.24□□□□□ -0.13
SMG1-208ENST00000563448 BCANQ96GW7 911 aa14.23□□□□□ -0.13
SMG1-208ENST00000563448 METP08581 1390 aa14.23□□□□□ -0.13
SMG1-208ENST00000563448 CCDC7Q96M83 1385 aa14.23□□□□□ -0.13
SMG1-208ENST00000563448 DIEXFQ68CQ4 756 aaKnown RBP14.22□□□□□ -0.13
SMG1-208ENST00000563448 ANKLE2Q86XL3 938 aa14.22□□□□□ -0.13
SMG1-208ENST00000563448 CHD2O14647 1828 aaKnown RBP14.22□□□□□ -0.13
SMG1-208ENST00000563448 KIF7Q2M1P5 1343 aa14.21□□□□□ -0.13
SMG1-208ENST00000563448 DLC1Q96QB1 1528 aa14.21□□□□□ -0.13
SMG1-208ENST00000563448 LRPPRCP42704 1394 aaKnown RBP14.2□□□□□ -0.14
SMG1-208ENST00000563448 STK26Q9P289 416 aa14.2□□□□□ -0.14
SMG1-208ENST00000563448 LMTK3Q96Q04 1460 aa14.19□□□□□ -0.14
SMG1-208ENST00000563448 DISP3Q9P2K9 1392 aa14.19□□□□□ -0.14
SMG1-208ENST00000563448 CPS1P31327 1500 aa14.19□□□□□ -0.14
SMG1-208ENST00000563448 DDX10Q13206 875 aaKnown RBP14.19□□□□□ -0.14
SMG1-208ENST00000563448 SLC26A8Q96RN1 970 aa14.19□□□□□ -0.14
SMG1-208ENST00000563448 CENPJQ9HC77 1338 aaPredicted RBP14.19□□□□□ -0.14
SMG1-208ENST00000563448 TBX22Q9Y458 520 aa14.19□□□□□ -0.14
SMG1-208ENST00000563448 STRCQ7RTU9 1775 aa14.18□□□□□ -0.14
SMG1-208ENST00000563448 ABCC11Q96J66 1382 aa14.18□□□□□ -0.14
SMG1-208ENST00000563448 XRN1Q8IZH2 1706 aaKnown RBP14.18□□□□□ -0.14
SMG1-208ENST00000563448 SBNO2Q9Y2G9 1366 aa14.18□□□□□ -0.14
SMG1-208ENST00000563448 PTPRUQ92729 1446 aa14.17□□□□□ -0.14
SMG1-208ENST00000563448 TECPR2O15040 1411 aa14.17□□□□□ -0.14
SMG1-208ENST00000563448 NPHP4O75161 1426 aaPredicted RBP14.17□□□□□ -0.14
SMG1-208ENST00000563448 MYOM1P52179 1685 aa14.17□□□□□ -0.14
SMG1-208ENST00000563448 TMF1P82094 1093 aa14.17□□□□□ -0.14
SMG1-208ENST00000563448 NCKAP5LQ9HCH0 1330 aa14.17□□□□□ -0.14
SMG1-208ENST00000563448 TULP4Q9NRJ4 1543 aa14.14□□□□□ -0.15
SMG1-208ENST00000563448 HSPA2P54652 639 aa14.14□□□□□ -0.15
SMG1-208ENST00000563448 PRAM1Q96QH2 718 aa14.14□□□□□ -0.15
SMG1-208ENST00000563448 POLR3GLQ9BT43 218 aa14.14□□□□□ -0.15
SMG1-208ENST00000563448 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.14□□□□□ -0.15
SMG1-208ENST00000563448 PLEKHH1Q9ULM0 1364 aa14.13□□□□□ -0.15
SMG1-208ENST00000563448 SLC24A1O60721 1099 aa14.13□□□□□ -0.15
SMG1-208ENST00000563448 FAM135BQ49AJ0 1406 aa14.12□□□□□ -0.15
SMG1-208ENST00000563448 PIK3R4Q99570 1358 aa14.12□□□□□ -0.15
SMG1-208ENST00000563448 SAFB2Q14151 953 aaKnown RBP eCLIP14.12□□□□□ -0.15
SMG1-208ENST00000563448 WAPLQ7Z5K2 1190 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms