RNA–Protein interactions for RNA: ENST00000563109.1

RAB40C-207, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 710 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-207ENST00000563109 SCAF11Q99590 1463 aaKnown RBP27.32■■□□□ 1.96
RAB40C-207ENST00000563109 IFT172Q9UG01 1749 aa27.31■■□□□ 1.96
RAB40C-207ENST00000563109 ZFYVE9O95405 1425 aa27.31■■□□□ 1.96
RAB40C-207ENST00000563109 RGL3Q3MIN7 710 aa27.3■■□□□ 1.96
RAB40C-207ENST00000563109 ANKLE2Q86XL3 938 aa27.3■■□□□ 1.96
RAB40C-207ENST00000563109 SIN3AQ96ST3 1273 aa27.3■■□□□ 1.96
RAB40C-207ENST00000563109 STRCQ7RTU9 1775 aa27.3■■□□□ 1.96
RAB40C-207ENST00000563109 PPP1R15AO75807 674 aaPredicted RBP27.29■■□□□ 1.96
RAB40C-207ENST00000563109 NEUROD1Q13562 356 aa27.29■■□□□ 1.96
RAB40C-207ENST00000563109 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.29■■□□□ 1.96
RAB40C-207ENST00000563109 RPGRIP1LQ68CZ1 1315 aa27.29■■□□□ 1.96
RAB40C-207ENST00000563109 TXNDC2Q86VQ3 553 aa27.27■■□□□ 1.96
RAB40C-207ENST00000563109 NCKAP5LQ9HCH0 1330 aa27.24■■□□□ 1.95
RAB40C-207ENST00000563109 IQGAP1P46940 1657 aa27.24■■□□□ 1.95
RAB40C-207ENST00000563109 LTKP29376 864 aa27.22■■□□□ 1.95
RAB40C-207ENST00000563109 MED14O60244 1454 aa27.21■■□□□ 1.95
RAB40C-207ENST00000563109 NPHP4O75161 1426 aaPredicted RBP27.21■■□□□ 1.95
RAB40C-207ENST00000563109 MYOM2P54296 1465 aa27.2■■□□□ 1.95
RAB40C-207ENST00000563109 NUTM2DQ5VT03 806 aaPredicted RBP27.2■■□□□ 1.94
RAB40C-207ENST00000563109 TONSLQ96HA7 1378 aa27.2■■□□□ 1.94
RAB40C-207ENST00000563109 VGFO15240 615 aaPredicted RBP27.19■■□□□ 1.94
RAB40C-207ENST00000563109 PLEKHG1Q9ULL1 1385 aa27.19■■□□□ 1.94
RAB40C-207ENST00000563109 BCANQ96GW7 911 aa27.16■■□□□ 1.94
RAB40C-207ENST00000563109 DMRT2Q9Y5R5 561 aa27.16■■□□□ 1.94
RAB40C-207ENST00000563109 SETBP1Q9Y6X0 1596 aa27.15■■□□□ 1.94
RAB40C-207ENST00000563109 DCAF11Q8TEB1 546 aa27.15■■□□□ 1.94
RAB40C-207ENST00000563109 STAC3Q96MF2 364 aa27.14■■□□□ 1.94
RAB40C-207ENST00000563109 DIP2AQ14689 1571 aa27.13■■□□□ 1.93
RAB40C-207ENST00000563109 L3MBTL2Q969R5 705 aa27.11■■□□□ 1.93
RAB40C-207ENST00000563109 KDM2AQ9Y2K7 1162 aa27.11■■□□□ 1.93
RAB40C-207ENST00000563109 NRXN3Q9Y4C0 1643 aa27.11■■□□□ 1.93
RAB40C-207ENST00000563109 NRXN1Q9ULB1 1477 aa27.1■■□□□ 1.93
RAB40C-207ENST00000563109 ADGRF5Q8IZF2 1346 aa27.1■■□□□ 1.93
RAB40C-207ENST00000563109 LAMC1P11047 1609 aa27.09■■□□□ 1.93
RAB40C-207ENST00000563109 SENP3Q9H4L4 574 aaPredicted RBP27.09■■□□□ 1.93
RAB40C-207ENST00000563109 PIK3C2GO75747 1445 aa27.08■■□□□ 1.93
RAB40C-207ENST00000563109 TIMELESSQ9UNS1 1208 aa27.05■■□□□ 1.92
RAB40C-207ENST00000563109 ADAMTS13Q76LX8 1427 aa27.05■■□□□ 1.92
RAB40C-207ENST00000563109 ALKQ9UM73 1620 aa27.05■■□□□ 1.92
RAB40C-207ENST00000563109 SETD1AO15047 1707 aaKnown RBP27.03■■□□□ 1.92
RAB40C-207ENST00000563109 SLC26A8Q96RN1 970 aa27.03■■□□□ 1.92
RAB40C-207ENST00000563109 PRAG1Q86YV5 1406 aa27.02■■□□□ 1.92
RAB40C-207ENST00000563109 KIAA1210Q9ULL0 1709 aa27■■□□□ 1.91
RAB40C-207ENST00000563109 TBX22Q9Y458 520 aa27■■□□□ 1.91
RAB40C-207ENST00000563109 PIK3R4Q99570 1358 aa26.96■■□□□ 1.91
RAB40C-207ENST00000563109 TRPM1Q7Z4N2 1603 aa26.94■■□□□ 1.9
RAB40C-207ENST00000563109 C14orf93Q9H972 538 aaKnown RBP26.94■■□□□ 1.9
RAB40C-207ENST00000563109 CHD2O14647 1828 aaKnown RBP26.94■■□□□ 1.9
RAB40C-207ENST00000563109 NWD1Q149M9 1564 aa26.93■■□□□ 1.9
RAB40C-207ENST00000563109 CFAP70Q5T0N1 1121 aa26.92■■□□□ 1.9
RAB40C-207ENST00000563109 METP08581 1390 aa26.92■■□□□ 1.9
RAB40C-207ENST00000563109 ASXL1Q8IXJ9 1541 aa26.91■■□□□ 1.9
RAB40C-207ENST00000563109 XRN1Q8IZH2 1706 aaKnown RBP26.89■■□□□ 1.9
RAB40C-207ENST00000563109 STRCP1A6NGW2 1772 aa26.88■■□□□ 1.89
RAB40C-207ENST00000563109 ZNF335Q9H4Z2 1342 aaPredicted RBP26.88■■□□□ 1.89
RAB40C-207ENST00000563109 ADGRB1O14514 1584 aa26.87■■□□□ 1.89
RAB40C-207ENST00000563109 KNDC1Q76NI1 1749 aa26.87■■□□□ 1.89
RAB40C-207ENST00000563109 RALGAPBQ86X10 1494 aa26.87■■□□□ 1.89
RAB40C-207ENST00000563109 KCNA6P17658 529 aa26.86■■□□□ 1.89
RAB40C-207ENST00000563109 NKTRP30414 1462 aaKnown RBP26.86■■□□□ 1.89
RAB40C-207ENST00000563109 CPS1P31327 1500 aa26.85■■□□□ 1.89
RAB40C-207ENST00000563109 NBPF8Q3BBV2 869 aa26.85■■□□□ 1.89
RAB40C-207ENST00000563109 PTPRUQ92729 1446 aa26.84■■□□□ 1.89
RAB40C-207ENST00000563109 TMEM132EQ6IEE7 984 aa26.84■■□□□ 1.89
RAB40C-207ENST00000563109 ROCK2O75116 1388 aaKnown RBP26.84■■□□□ 1.89
RAB40C-207ENST00000563109 YTHDC2Q9H6S0 1430 aaKnown RBP26.83■■□□□ 1.89
RAB40C-207ENST00000563109 LRPPRCP42704 1394 aaKnown RBP26.83■■□□□ 1.88
RAB40C-207ENST00000563109 AMOTL2Q9Y2J4 779 aa26.82■■□□□ 1.88
RAB40C-207ENST00000563109 LTBP4Q8N2S1 1624 aa26.8■■□□□ 1.88
RAB40C-207ENST00000563109 PTCH1Q13635 1447 aa26.79■■□□□ 1.88
RAB40C-207ENST00000563109 NBPF1Q3BBV0 1214 aa26.78■■□□□ 1.88
RAB40C-207ENST00000563109 STK26Q9P289 416 aa26.78■■□□□ 1.88
RAB40C-207ENST00000563109 TECPR2O15040 1411 aa26.78■■□□□ 1.88
RAB40C-207ENST00000563109 ABCC11Q96J66 1382 aa26.77■■□□□ 1.88
RAB40C-207ENST00000563109 DLC1Q96QB1 1528 aa26.76■■□□□ 1.87
RAB40C-207ENST00000563109 GPRASP1Q5JY77 1395 aa26.75■■□□□ 1.87
RAB40C-207ENST00000563109 ARHGEF28Q8N1W1 1705 aaKnown RBP26.75■■□□□ 1.87
RAB40C-207ENST00000563109 PROSER2Q86WR7 435 aaPredicted RBP26.73■■□□□ 1.87
RAB40C-207ENST00000563109 LRRC7Q96NW7 1537 aa26.73■■□□□ 1.87
RAB40C-207ENST00000563109 CARD11Q9BXL7 1154 aa26.72■■□□□ 1.87
RAB40C-207ENST00000563109 TRAK1Q9UPV9 953 aa26.71■■□□□ 1.87
RAB40C-207ENST00000563109 ROBO2Q9HCK4 1378 aa26.71■■□□□ 1.87
RAB40C-207ENST00000563109 ZEB1P37275 1124 aaPredicted RBP26.7■■□□□ 1.86
RAB40C-207ENST00000563109 FAM135BQ49AJ0 1406 aa26.7■■□□□ 1.86
RAB40C-207ENST00000563109 XIRP1Q702N8 1843 aaKnown RBP26.69■■□□□ 1.86
RAB40C-207ENST00000563109 EIF3AQ14152 1382 aaKnown RBP26.69■■□□□ 1.86
RAB40C-207ENST00000563109 TMEM94Q12767 1356 aa26.68■■□□□ 1.86
RAB40C-207ENST00000563109 SIRT1Q96EB6 747 aa26.67■■□□□ 1.86
RAB40C-207ENST00000563109 NCOA3Q9Y6Q9 1424 aa26.66■■□□□ 1.86
RAB40C-207ENST00000563109 POGKQ9P215 609 aa26.66■■□□□ 1.86
RAB40C-207ENST00000563109 C14orf37Q86TY3 774 aa26.65■■□□□ 1.86
RAB40C-207ENST00000563109 NALCNQ8IZF0 1738 aa26.65■■□□□ 1.86
RAB40C-207ENST00000563109 IQSEC2Q5JU85 1478 aa26.64■■□□□ 1.86
RAB40C-207ENST00000563109 PRAM1Q96QH2 718 aa26.64■■□□□ 1.86
RAB40C-207ENST00000563109 QRICH2Q9H0J4 1663 aa26.63■■□□□ 1.85
RAB40C-207ENST00000563109 RBM33Q96EV2 1170 aaKnown RBP26.62■■□□□ 1.85
RAB40C-207ENST00000563109 PLEKHH1Q9ULM0 1364 aa26.61■■□□□ 1.85
RAB40C-207ENST00000563109 WAPLQ7Z5K2 1190 aa26.61■■□□□ 1.85
RAB40C-207ENST00000563109 ADGRL3Q9HAR2 1447 aa26.61■■□□□ 1.85
RAB40C-207ENST00000563109 MSH6P52701 1360 aa26.6■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms