RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SUPT16HQ9Y5B9 1047 aaKnown RBP12.03□□□□□ -0.48
VPS39-205ENST00000562258 ZC3H6P61129 1189 aaKnown RBP12.03□□□□□ -0.48
VPS39-205ENST00000562258 A2MP01023 1474 aa12.02□□□□□ -0.48
VPS39-205ENST00000562258 RALBP1Q15311 655 aa12.02□□□□□ -0.49
VPS39-205ENST00000562258 NLRP13Q86W25 1043 aa12.02□□□□□ -0.49
VPS39-205ENST00000562258 ZNF518AQ6AHZ1 1483 aa12.02□□□□□ -0.49
VPS39-205ENST00000562258 HMOX1P09601 288 aa12.01□□□□□ -0.49
VPS39-205ENST00000562258 TNRQ92752 1358 aa12.01□□□□□ -0.49
VPS39-205ENST00000562258 CTTNBP2Q8WZ74 1663 aa12.01□□□□□ -0.49
VPS39-205ENST00000562258 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.01□□□□□ -0.49
VPS39-205ENST00000562258 KIF7Q2M1P5 1343 aa12.01□□□□□ -0.49
VPS39-205ENST00000562258 NCKAP5LQ9HCH0 1330 aa12.01□□□□□ -0.49
VPS39-205ENST00000562258 GPRASP1Q5JY77 1395 aa12.01□□□□□ -0.49
VPS39-205ENST00000562258 ADAMTS2O95450 1211 aa12□□□□□ -0.49
VPS39-205ENST00000562258 MYH16Q9H6N6 1097 aa11.99□□□□□ -0.49
VPS39-205ENST00000562258 KDM5BQ9UGL1 1544 aa11.99□□□□□ -0.49
VPS39-205ENST00000562258 ZMYM3Q14202 1370 aa11.99□□□□□ -0.49
VPS39-205ENST00000562258 UBAP1LF5GYI3 381 aa11.99□□□□□ -0.49
VPS39-205ENST00000562258 CHD1O14646 1710 aa11.99□□□□□ -0.49
VPS39-205ENST00000562258 ANKRD30BQ9BXX2 1392 aa11.99□□□□□ -0.49
VPS39-205ENST00000562258 RPGRIP1LQ68CZ1 1315 aa11.98□□□□□ -0.49
VPS39-205ENST00000562258 PRDM11Q9NQV5 511 aa11.98□□□□□ -0.49
VPS39-205ENST00000562258 MSH5O43196 834 aa11.98□□□□□ -0.49
VPS39-205ENST00000562258 NUDT16Q96DE0 195 aaKnown RBP11.98□□□□□ -0.49
VPS39-205ENST00000562258 CCDC61Q9Y6R9 512 aa11.97□□□□□ -0.49
VPS39-205ENST00000562258 NGEFQ8N5V2 710 aa11.97□□□□□ -0.49
VPS39-205ENST00000562258 DMRT2Q9Y5R5 561 aa11.97□□□□□ -0.49
VPS39-205ENST00000562258 RTEL1-TNFRSF6BF6WH68 1400 aa11.96□□□□□ -0.49
VPS39-205ENST00000562258 MTHFSP49914 203 aa11.96□□□□□ -0.49
VPS39-205ENST00000562258 PRKRIP1Q9H875 184 aaPredicted RBP11.96□□□□□ -0.49
VPS39-205ENST00000562258 RAPGEF4Q8WZA2 1011 aa11.96□□□□□ -0.5
VPS39-205ENST00000562258 ABCC10Q5T3U5 1492 aa11.96□□□□□ -0.5
VPS39-205ENST00000562258 DIAPH1O60610 1272 aaKnown RBP11.96□□□□□ -0.5
VPS39-205ENST00000562258 MAP3K1Q13233 1512 aa11.95□□□□□ -0.5
VPS39-205ENST00000562258 TEFQ10587 303 aa11.95□□□□□ -0.5
VPS39-205ENST00000562258 TCERG1O14776 1098 aaKnown RBP11.95□□□□□ -0.5
VPS39-205ENST00000562258 C1orf141Q5JVX7 400 aa11.95□□□□□ -0.5
VPS39-205ENST00000562258 NECTIN2Q92692 538 aa11.95□□□□□ -0.5
VPS39-205ENST00000562258 APAF1O14727 1248 aa11.94□□□□□ -0.5
VPS39-205ENST00000562258 NOS1P29475 1434 aa11.94□□□□□ -0.5
VPS39-205ENST00000562258 YEATS2Q9ULM3 1422 aa11.94□□□□□ -0.5
VPS39-205ENST00000562258 WASHC2AQ641Q2 1341 aa11.94□□□□□ -0.5
VPS39-205ENST00000562258 RRS1Q15050 365 aaKnown RBP11.93□□□□□ -0.5
VPS39-205ENST00000562258 CFAP65Q6ZU64 1925 aaKnown RBP11.93□□□□□ -0.5
VPS39-205ENST00000562258 CLUAP1Q96AJ1 413 aa11.93□□□□□ -0.5
VPS39-205ENST00000562258 TSPOAP1O95153 1857 aa11.93□□□□□ -0.5
VPS39-205ENST00000562258 APBB1O00213 710 aa11.93□□□□□ -0.5
VPS39-205ENST00000562258 TOM1L2Q6ZVM7 507 aa11.92□□□□□ -0.5
VPS39-205ENST00000562258 BCL2L13Q9BXK5 485 aa11.92□□□□□ -0.5
VPS39-205ENST00000562258 DDX54Q8TDD1 881 aaKnown RBP11.92□□□□□ -0.5
VPS39-205ENST00000562258 UHRF1BP1LA0JNW5 1464 aa11.92□□□□□ -0.5
VPS39-205ENST00000562258 OS9Q13438 667 aaPredicted RBP11.91□□□□□ -0.5
VPS39-205ENST00000562258 SLC4A10Q6U841 1118 aa11.91□□□□□ -0.5
VPS39-205ENST00000562258 PHF8Q9UPP1 1060 aa11.91□□□□□ -0.5
VPS39-205ENST00000562258 EIF2S2P20042 333 aaKnown RBP11.91□□□□□ -0.5
VPS39-205ENST00000562258 CCDC7Q96M83 1385 aa11.91□□□□□ -0.5
VPS39-205ENST00000562258 KCNA6P17658 529 aa11.91□□□□□ -0.5
VPS39-205ENST00000562258 GTF2E1P29083 439 aaPredicted RBP11.9□□□□□ -0.5
VPS39-205ENST00000562258 CCER2I3L3R5 266 aa11.9□□□□□ -0.5
VPS39-205ENST00000562258 MYBBP1AQ9BQG0 1328 aaKnown RBP11.9□□□□□ -0.5
VPS39-205ENST00000562258 NGLY1Q96IV0 654 aa11.89□□□□□ -0.51
VPS39-205ENST00000562258 STK31Q9BXU1 1019 aa11.89□□□□□ -0.51
VPS39-205ENST00000562258 ZNF692Q9BU19 519 aaPredicted RBP11.89□□□□□ -0.51
VPS39-205ENST00000562258 FBLN1P23142 703 aa11.89□□□□□ -0.51
VPS39-205ENST00000562258 CADPS2Q86UW7 1296 aa11.89□□□□□ -0.51
VPS39-205ENST00000562258 C14orf93Q9H972 538 aaKnown RBP11.88□□□□□ -0.51
VPS39-205ENST00000562258 KAT6BQ8WYB5 2073 aa11.88□□□□□ -0.51
VPS39-205ENST00000562258 WASLO00401 505 aaPredicted RBP11.88□□□□□ -0.51
VPS39-205ENST00000562258 RIPK4P57078 832 aa11.88□□□□□ -0.51
VPS39-205ENST00000562258 ATP10AO60312 1499 aa11.87□□□□□ -0.51
VPS39-205ENST00000562258 NME9Q86XW9 330 aa11.87□□□□□ -0.51
VPS39-205ENST00000562258 KLHL34Q8N239 644 aa11.87□□□□□ -0.51
VPS39-205ENST00000562258 CHMP3Q9Y3E7 222 aa11.87□□□□□ -0.51
VPS39-205ENST00000562258 TOM1O60784 492 aa11.87□□□□□ -0.51
VPS39-205ENST00000562258 GOLGA2Q08379 1002 aa11.87□□□□□ -0.51
VPS39-205ENST00000562258 FAM135AQ9P2D6 1515 aa11.87□□□□□ -0.51
VPS39-205ENST00000562258 TTC5Q8N0Z6 440 aa11.87□□□□□ -0.51
VPS39-205ENST00000562258 CALD1Q05682 793 aaKnown RBP11.86□□□□□ -0.51
VPS39-205ENST00000562258 CHRNA2Q15822 529 aa11.86□□□□□ -0.51
VPS39-205ENST00000562258 SMC4Q9NTJ3 1288 aa11.86□□□□□ -0.51
VPS39-205ENST00000562258 WDR97A6NE52 1622 aa11.86□□□□□ -0.51
VPS39-205ENST00000562258 RGS3P49796 1198 aa11.86□□□□□ -0.51
VPS39-205ENST00000562258 SULT6B1Q6IMI4 303 aa11.86□□□□□ -0.51
VPS39-205ENST00000562258 KRT28Q7Z3Y7 464 aa11.86□□□□□ -0.51
VPS39-205ENST00000562258 C11orf95C9JLR9 678 aaPredicted RBP11.86□□□□□ -0.51
VPS39-205ENST00000562258 CABLES1Q8TDN4 633 aa11.85□□□□□ -0.51
VPS39-205ENST00000562258 MAGI3Q5TCQ9 1506 aa11.85□□□□□ -0.51
VPS39-205ENST00000562258 ZNF428Q96B54 188 aa11.84□□□□□ -0.51
VPS39-205ENST00000562258 LTKP29376 864 aa11.84□□□□□ -0.51
VPS39-205ENST00000562258 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.83□□□□□ -0.51
VPS39-205ENST00000562258 DUOX2Q9NRD8 1548 aa11.83□□□□□ -0.51
VPS39-205ENST00000562258 LMOD3Q0VAK6 560 aa11.83□□□□□ -0.52
VPS39-205ENST00000562258 RIMS2Q9UQ26 1411 aa11.83□□□□□ -0.52
VPS39-205ENST00000562258 PRKAR2BP31323 418 aa11.83□□□□□ -0.52
VPS39-205ENST00000562258 ADAMTS8Q9UP79 889 aa11.83□□□□□ -0.52
VPS39-205ENST00000562258 SAMD9Q5K651 1589 aa11.82□□□□□ -0.52
VPS39-205ENST00000562258 HSP90AA1P07900 732 aaKnown RBP11.82□□□□□ -0.52
VPS39-205ENST00000562258 USHBP1Q8N6Y0 703 aa11.82□□□□□ -0.52
VPS39-205ENST00000562258 B4GALNT3Q6L9W6 998 aa11.82□□□□□ -0.52
VPS39-205ENST00000562258 ITPRIPQ8IWB1 547 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms