RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 SOWAHBA6NEL2 793 aa13.9□□□□□ -0.18
SMG1-204ENST00000561940 DNAJB2P25686 324 aa13.9□□□□□ -0.18
SMG1-204ENST00000561940 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.86□□□□□ -0.19
SMG1-204ENST00000561940 SLC24A3Q9HC58 644 aa13.86□□□□□ -0.19
SMG1-204ENST00000561940 HPS5Q9UPZ3 1129 aa13.86□□□□□ -0.19
SMG1-204ENST00000561940 TMEM134Q9H6X4 195 aa13.85□□□□□ -0.19
SMG1-204ENST00000561940 WBP1LQ9NX94 342 aa13.85□□□□□ -0.19
SMG1-204ENST00000561940 HCSTQ9UBK5 93 aa13.84□□□□□ -0.19
SMG1-204ENST00000561940 PPP4CP60510 307 aa13.82□□□□□ -0.2
SMG1-204ENST00000561940 MDM2Q00987 491 aaPredicted RBP13.81□□□□□ -0.2
SMG1-204ENST00000561940 TSR3Q9UJK0 312 aaKnown RBP13.81□□□□□ -0.2
SMG1-204ENST00000561940 SLF2Q8IX21 1173 aa13.79□□□□□ -0.2
SMG1-204ENST00000561940 AK7Q96M32 723 aa13.78□□□□□ -0.2
SMG1-204ENST00000561940 DAXXQ9UER7 740 aaPredicted RBP13.77□□□□□ -0.21
SMG1-204ENST00000561940 SLC4A3P48751 1232 aa13.76□□□□□ -0.21
SMG1-204ENST00000561940 DDX11L8A8MPP1 907 aa13.75□□□□□ -0.21
SMG1-204ENST00000561940 TRIM66O15016 1216 aa13.75□□□□□ -0.21
SMG1-204ENST00000561940 SLC10A3P09131 477 aa13.73□□□□□ -0.21
SMG1-204ENST00000561940 RDH13Q8NBN7 331 aa13.72□□□□□ -0.21
SMG1-204ENST00000561940 REPIN1Q9BWE0 567 aaKnown RBP13.72□□□□□ -0.21
SMG1-204ENST00000561940 TTLL12Q14166 644 aaPredicted RBP13.71□□□□□ -0.21
SMG1-204ENST00000561940 APLP1P51693 650 aa13.7□□□□□ -0.22
SMG1-204ENST00000561940 GPCPD1Q9NPB8 672 aa13.69□□□□□ -0.22
SMG1-204ENST00000561940 CLCN1P35523 988 aa13.68□□□□□ -0.22
SMG1-204ENST00000561940 CFHP08603 1231 aa13.67□□□□□ -0.22
SMG1-204ENST00000561940 PDE4DQ08499 809 aa13.66□□□□□ -0.22
SMG1-204ENST00000561940 AMHR2Q16671 573 aa13.66□□□□□ -0.22
SMG1-204ENST00000561940 RSPH4AQ5TD94 716 aa13.66□□□□□ -0.22
SMG1-204ENST00000561940 SULF1Q8IWU6 871 aa13.65□□□□□ -0.22
SMG1-204ENST00000561940 TMUB1Q9BVT8 246 aa13.65□□□□□ -0.22
SMG1-204ENST00000561940 NECTIN2Q92692 538 aa13.64□□□□□ -0.23
SMG1-204ENST00000561940 NYAP1Q6ZVC0 841 aa13.63□□□□□ -0.23
SMG1-204ENST00000561940 FAM217BQ9NTX9 383 aaPredicted RBP13.63□□□□□ -0.23
SMG1-204ENST00000561940 SSTR3P32745 418 aaPredicted RBP13.62□□□□□ -0.23
SMG1-204ENST00000561940 GIGYF2Q6Y7W6 1299 aaKnown RBP13.62□□□□□ -0.23
SMG1-204ENST00000561940 PARP9Q8IXQ6 854 aa13.62□□□□□ -0.23
SMG1-204ENST00000561940 KMT5BQ4FZB7 885 aa13.61□□□□□ -0.23
SMG1-204ENST00000561940 CD46P15529 392 aa13.59□□□□□ -0.23
SMG1-204ENST00000561940 COPS2P61201 443 aa13.59□□□□□ -0.23
SMG1-204ENST00000561940 GCGRP47871 477 aa13.58□□□□□ -0.24
SMG1-204ENST00000561940 PUS10Q3MIT2 529 aaKnown RBP13.57□□□□□ -0.24
SMG1-204ENST00000561940 MTRQ99707 1265 aa13.57□□□□□ -0.24
SMG1-204ENST00000561940 PLA2G2EQ9NZK7 142 aa13.57□□□□□ -0.24
SMG1-204ENST00000561940 PCDHB3Q9Y5E6 796 aa13.57□□□□□ -0.24
SMG1-204ENST00000561940 ACTN4O43707 911 aaKnown RBP13.56□□□□□ -0.24
SMG1-204ENST00000561940 PRR14Q9BWN1 585 aa13.56□□□□□ -0.24
SMG1-204ENST00000561940 GPBP1L1Q9HC44 474 aaPredicted RBP13.55□□□□□ -0.24
SMG1-204ENST00000561940 MS4A1P11836 297 aa13.54□□□□□ -0.24
SMG1-204ENST00000561940 FUT2Q10981 343 aa13.54□□□□□ -0.24
SMG1-204ENST00000561940 TJAP1Q5JTD0 557 aa13.54□□□□□ -0.24
SMG1-204ENST00000561940 BLOC1S3Q6QNY0 202 aa13.54□□□□□ -0.24
SMG1-204ENST00000561940 ZNF516Q92618 1163 aa13.54□□□□□ -0.24
SMG1-204ENST00000561940 BEGAINQ9BUH8 593 aa13.51□□□□□ -0.25
SMG1-204ENST00000561940 KCNC4Q03721 635 aa13.5□□□□□ -0.25
SMG1-204ENST00000561940 IL21Q9HBE4 155 aa13.5□□□□□ -0.25
SMG1-204ENST00000561940 KDM4AO75164 1064 aa13.49□□□□□ -0.25
SMG1-204ENST00000561940 ATP6V1AP38606 617 aa13.48□□□□□ -0.25
SMG1-204ENST00000561940 NUTM1Q86Y26 1132 aa13.48□□□□□ -0.25
SMG1-204ENST00000561940 ITGBL1O95965 494 aaPredicted RBP13.47□□□□□ -0.25
SMG1-204ENST00000561940 NEUROD2Q15784 382 aa13.47□□□□□ -0.25
SMG1-204ENST00000561940 HLA-CQ95604 372 aa13.47□□□□□ -0.25
SMG1-204ENST00000561940 KDM4CQ9H3R0 1056 aa13.47□□□□□ -0.25
SMG1-204ENST00000561940 NKX2-3Q8TAU0 364 aa13.46□□□□□ -0.25
SMG1-204ENST00000561940 MORN1Q5T089 497 aa13.45□□□□□ -0.26
SMG1-204ENST00000561940 SCUBE3Q8IX30 993 aa13.45□□□□□ -0.26
SMG1-204ENST00000561940 ZPR1O75312 459 aa13.44□□□□□ -0.26
SMG1-204ENST00000561940 TLL1O43897 1013 aa13.43□□□□□ -0.26
SMG1-204ENST00000561940 GUCA2AQ02747 115 aa13.43□□□□□ -0.26
SMG1-204ENST00000561940 SPIRE2Q8WWL2 714 aa13.43□□□□□ -0.26
SMG1-204ENST00000561940 SLC27A5Q9Y2P5 690 aa13.43□□□□□ -0.26
SMG1-204ENST00000561940 NR1I2O75469 434 aa13.42□□□□□ -0.26
SMG1-204ENST00000561940 GRIPAP1Q4V328 841 aa13.41□□□□□ -0.26
SMG1-204ENST00000561940 TBC1D2Q9BYX2 928 aa13.41□□□□□ -0.26
SMG1-204ENST00000561940 HOXA2O43364 376 aa13.4□□□□□ -0.26
SMG1-204ENST00000561940 NDUFV2P19404 249 aa13.4□□□□□ -0.26
SMG1-204ENST00000561940 BRPF1P55201 1214 aaPredicted RBP13.4□□□□□ -0.26
SMG1-204ENST00000561940 FAM117AQ9C073 453 aa13.4□□□□□ -0.26
SMG1-204ENST00000561940 USP46P62068 366 aa13.39□□□□□ -0.27
SMG1-204ENST00000561940 MOXD2PA6NHM9 499 aa13.37□□□□□ -0.27
SMG1-204ENST00000561940 RNF19BQ6ZMZ0 732 aa13.35□□□□□ -0.27
SMG1-204ENST00000561940 IFFO2Q5TF58 517 aa13.34□□□□□ -0.27
SMG1-204ENST00000561940 SYMPKQ92797 1274 aaKnown RBP13.34□□□□□ -0.27
SMG1-204ENST00000561940 SPSB2Q99619 263 aa13.34□□□□□ -0.27
SMG1-204ENST00000561940 FDX1P10109 184 aa13.33□□□□□ -0.28
SMG1-204ENST00000561940 IL27Q8NEV9 243 aa13.33□□□□□ -0.28
SMG1-204ENST00000561940 FMNL1O95466 1100 aaPredicted RBP13.32□□□□□ -0.28
SMG1-204ENST00000561940 PCDHGC3Q9UN70 934 aa13.32□□□□□ -0.28
SMG1-204ENST00000561940 PPP1R18Q6NYC8 613 aa13.31□□□□□ -0.28
SMG1-204ENST00000561940 THAP11Q96EK4 314 aa13.31□□□□□ -0.28
SMG1-204ENST00000561940 POLR3EQ9NVU0 708 aa13.31□□□□□ -0.28
SMG1-204ENST00000561940 A0A0G2JS52 829 aa13.3□□□□□ -0.28
SMG1-204ENST00000561940 ADH1BP00325 375 aa13.3□□□□□ -0.28
SMG1-204ENST00000561940 CSPP1Q1MSJ5 1256 aa13.3□□□□□ -0.28
SMG1-204ENST00000561940 MYSM1Q5VVJ2 828 aa13.3□□□□□ -0.28
SMG1-204ENST00000561940 BRICD5Q6PL45 260 aa13.3□□□□□ -0.28
SMG1-204ENST00000561940 PLEKHG3A1L390 1219 aa13.29□□□□□ -0.28
SMG1-204ENST00000561940 DIXDC1Q155Q3 683 aa13.29□□□□□ -0.28
SMG1-204ENST00000561940 RIC3Q7Z5B4 369 aa13.29□□□□□ -0.28
SMG1-204ENST00000561940 DDRGK1Q96HY6 314 aa13.29□□□□□ -0.28
SMG1-204ENST00000561940 PCDHB15Q9Y5E8 787 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms