RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 E9PCH4 1651 aa15.6■□□□□ 0.09
CLK3-205ENST00000561673 ZFYVE9O95405 1425 aa15.6■□□□□ 0.09
CLK3-205ENST00000561673 KCNA6P17658 529 aa15.59■□□□□ 0.09
CLK3-205ENST00000561673 HSPA1LP34931 641 aa15.59■□□□□ 0.09
CLK3-205ENST00000561673 DISP3Q9P2K9 1392 aa15.59■□□□□ 0.09
CLK3-205ENST00000561673 RIMS2Q9UQ26 1411 aa15.59■□□□□ 0.09
CLK3-205ENST00000561673 NAIPQ13075 1403 aa15.58■□□□□ 0.08
CLK3-205ENST00000561673 TMEM131LA2VDJ0 1609 aa15.57■□□□□ 0.08
CLK3-205ENST00000561673 ALKQ9UM73 1620 aa15.57■□□□□ 0.08
CLK3-205ENST00000561673 PPP1R15AO75807 674 aaPredicted RBP15.57■□□□□ 0.08
CLK3-205ENST00000561673 NUTM2DQ5VT03 806 aaPredicted RBP15.56■□□□□ 0.08
CLK3-205ENST00000561673 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.56■□□□□ 0.08
CLK3-205ENST00000561673 PLEKHG1Q9ULL1 1385 aa15.56■□□□□ 0.08
CLK3-205ENST00000561673 PROSER2Q86WR7 435 aaPredicted RBP15.54■□□□□ 0.08
CLK3-205ENST00000561673 RBM33Q96EV2 1170 aaKnown RBP15.54■□□□□ 0.08
CLK3-205ENST00000561673 TMEM94Q12767 1356 aa15.53■□□□□ 0.08
CLK3-205ENST00000561673 MYO5BQ9ULV0 1848 aa15.52■□□□□ 0.08
CLK3-205ENST00000561673 TBX22Q9Y458 520 aa15.52■□□□□ 0.08
CLK3-205ENST00000561673 HFM1A2PYH4 1435 aa15.51■□□□□ 0.07
CLK3-205ENST00000561673 ILDR2Q71H61 639 aa15.51■□□□□ 0.07
CLK3-205ENST00000561673 TRIM52Q96A61 297 aa15.51■□□□□ 0.07
CLK3-205ENST00000561673 XIRP1Q702N8 1843 aaKnown RBP15.49■□□□□ 0.07
CLK3-205ENST00000561673 ZNF326Q5BKZ1 582 aaKnown RBP15.48■□□□□ 0.07
CLK3-205ENST00000561673 ADAMTS13Q76LX8 1427 aa15.48■□□□□ 0.07
CLK3-205ENST00000561673 NWD1Q149M9 1564 aa15.47■□□□□ 0.07
CLK3-205ENST00000561673 NKTRP30414 1462 aaKnown RBP15.46■□□□□ 0.07
CLK3-205ENST00000561673 SLC4A1APQ9BWU0 796 aaKnown RBP15.46■□□□□ 0.07
CLK3-205ENST00000561673 SPHKAPQ2M3C7 1700 aa15.46■□□□□ 0.06
CLK3-205ENST00000561673 FAM135BQ49AJ0 1406 aa15.44■□□□□ 0.06
CLK3-205ENST00000561673 TRPM2O94759 1503 aa15.43■□□□□ 0.06
CLK3-205ENST00000561673 MSH6P52701 1360 aa15.43■□□□□ 0.06
CLK3-205ENST00000561673 PIK3R4Q99570 1358 aa15.43■□□□□ 0.06
CLK3-205ENST00000561673 CHD2O14647 1828 aaKnown RBP15.43■□□□□ 0.06
CLK3-205ENST00000561673 SLAIN2Q9P270 581 aa15.42■□□□□ 0.06
CLK3-205ENST00000561673 AMOTL2Q9Y2J4 779 aa15.42■□□□□ 0.06
CLK3-205ENST00000561673 CLTCL1P53675 1640 aa15.42■□□□□ 0.06
CLK3-205ENST00000561673 DIP2AQ14689 1571 aa15.41■□□□□ 0.06
CLK3-205ENST00000561673 PTPRUQ92729 1446 aa15.41■□□□□ 0.06
CLK3-205ENST00000561673 NCOA3Q9Y6Q9 1424 aa15.4■□□□□ 0.06
CLK3-205ENST00000561673 C14orf37Q86TY3 774 aa15.39■□□□□ 0.05
CLK3-205ENST00000561673 MED1Q15648 1581 aaPredicted RBP15.39■□□□□ 0.05
CLK3-205ENST00000561673 METP08581 1390 aa15.38■□□□□ 0.05
CLK3-205ENST00000561673 MPHOSPH9Q99550 1183 aa15.38■□□□□ 0.05
CLK3-205ENST00000561673 C19orf44Q9H6X5 657 aa15.38■□□□□ 0.05
CLK3-205ENST00000561673 NEXMIFQ5QGS0 1516 aa15.38■□□□□ 0.05
CLK3-205ENST00000561673 SETBP1Q9Y6X0 1596 aa15.37■□□□□ 0.05
CLK3-205ENST00000561673 NRXN3Q9Y4C0 1643 aa15.36■□□□□ 0.05
CLK3-205ENST00000561673 SOCS7O14512 581 aa15.36■□□□□ 0.05
CLK3-205ENST00000561673 VGFO15240 615 aaPredicted RBP15.36■□□□□ 0.05
CLK3-205ENST00000561673 ROBO1Q9Y6N7 1651 aa15.35■□□□□ 0.05
CLK3-205ENST00000561673 ATF3P18847 181 aa15.35■□□□□ 0.05
CLK3-205ENST00000561673 CADPS2Q86UW7 1296 aa15.35■□□□□ 0.05
CLK3-205ENST00000561673 RPGRIP1LQ68CZ1 1315 aa15.35■□□□□ 0.05
CLK3-205ENST00000561673 KCNA4P22459 653 aa15.34■□□□□ 0.05
CLK3-205ENST00000561673 KIF1BO60333 1816 aa15.33■□□□□ 0.04
CLK3-205ENST00000561673 SETD5Q9C0A6 1442 aa15.32■□□□□ 0.04
CLK3-205ENST00000561673 CCDC144AA2RUR9 1427 aa15.3■□□□□ 0.04
CLK3-205ENST00000561673 RGL3Q3MIN7 710 aa15.3■□□□□ 0.04
CLK3-205ENST00000561673 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.3■□□□□ 0.04
CLK3-205ENST00000561673 ACIN1Q9UKV3 1341 aaKnown RBP15.3■□□□□ 0.04
CLK3-205ENST00000561673 XRN1Q8IZH2 1706 aaKnown RBP15.29■□□□□ 0.04
CLK3-205ENST00000561673 ADGRF5Q8IZF2 1346 aa15.27■□□□□ 0.04
CLK3-205ENST00000561673 BRINP3Q76B58 766 aa15.27■□□□□ 0.04
CLK3-205ENST00000561673 RGS17Q9UGC6 210 aaPredicted RBP15.27■□□□□ 0.04
CLK3-205ENST00000561673 DCCP43146 1447 aa15.26■□□□□ 0.03
CLK3-205ENST00000561673 SPATA31E1Q6ZUB1 1445 aa15.26■□□□□ 0.03
CLK3-205ENST00000561673 RAB3GAP2Q9H2M9 1393 aa15.26■□□□□ 0.03
CLK3-205ENST00000561673 ROBO2Q9HCK4 1378 aa15.24■□□□□ 0.03
CLK3-205ENST00000561673 JCADQ9P266 1359 aa15.24■□□□□ 0.03
CLK3-205ENST00000561673 PHLPP1O60346 1717 aa15.24■□□□□ 0.03
CLK3-205ENST00000561673 ADGRL3Q9HAR2 1447 aa15.24■□□□□ 0.03
CLK3-205ENST00000561673 PPLO60437 1756 aa15.24■□□□□ 0.03
CLK3-205ENST00000561673 MST1RQ04912 1400 aa15.23■□□□□ 0.03
CLK3-205ENST00000561673 ANKRD30BQ9BXX2 1392 aa15.23■□□□□ 0.03
CLK3-205ENST00000561673 PTCH1Q13635 1447 aa15.22■□□□□ 0.03
CLK3-205ENST00000561673 SETD1AO15047 1707 aaKnown RBP15.22■□□□□ 0.03
CLK3-205ENST00000561673 COL16A1Q07092 1604 aaPredicted RBP15.21■□□□□ 0.02
CLK3-205ENST00000561673 AHDC1Q5TGY3 1603 aaPredicted RBP15.2■□□□□ 0.02
CLK3-205ENST00000561673 PRAG1Q86YV5 1406 aa15.19■□□□□ 0.02
CLK3-205ENST00000561673 TMEM132EQ6IEE7 984 aa15.19■□□□□ 0.02
CLK3-205ENST00000561673 DDX17Q92841 729 aaKnown RBP15.19■□□□□ 0.02
CLK3-205ENST00000561673 STK26Q9P289 416 aa15.19■□□□□ 0.02
CLK3-205ENST00000561673 ASXL1Q8IXJ9 1541 aa15.18■□□□□ 0.02
CLK3-205ENST00000561673 HRCP23327 699 aa15.18■□□□□ 0.02
CLK3-205ENST00000561673 POTEAQ6S8J7 498 aa15.18■□□□□ 0.02
CLK3-205ENST00000561673 SPATA31A6Q5VVP1 1343 aa15.17■□□□□ 0.02
CLK3-205ENST00000561673 NALCNQ8IZF0 1738 aa15.17■□□□□ 0.02
CLK3-205ENST00000561673 C1orf167Q5SNV9 1468 aa15.17■□□□□ 0.02
CLK3-205ENST00000561673 WAPLQ7Z5K2 1190 aa15.17■□□□□ 0.02
CLK3-205ENST00000561673 PIK3C2GO75747 1445 aa15.17■□□□□ 0.02
CLK3-205ENST00000561673 C14orf93Q9H972 538 aaKnown RBP15.16■□□□□ 0.02
CLK3-205ENST00000561673 LRPPRCP42704 1394 aaKnown RBP15.15■□□□□ 0.02
CLK3-205ENST00000561673 LRRC59Q96AG4 307 aaKnown RBP15.15■□□□□ 0.02
CLK3-205ENST00000561673 ORAI2Q96SN7 254 aa15.15■□□□□ 0.02
CLK3-205ENST00000561673 IFT172Q9UG01 1749 aa15.14■□□□□ 0.01
CLK3-205ENST00000561673 ABCC11Q96J66 1382 aa15.14■□□□□ 0.01
CLK3-205ENST00000561673 CFAP70Q5T0N1 1121 aa15.14■□□□□ 0.01
CLK3-205ENST00000561673 LRP6O75581 1613 aa15.14■□□□□ 0.01
CLK3-205ENST00000561673 NUTM2BA6NNL0 878 aaPredicted RBP15.13■□□□□ 0.01
CLK3-205ENST00000561673 NUTM2EB1AL46 878 aaPredicted RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms