RNA–Protein interactions for RNA: ENST00000561662.1

COMMD4-204, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 482 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-204ENST00000561662 LMTK2Q8IWU2 1503 aa28.66■■■□□ 2.18
COMMD4-204ENST00000561662 TRIM52Q96A61 297 aa28.66■■■□□ 2.18
COMMD4-204ENST00000561662 NOS1P29475 1434 aa28.66■■■□□ 2.18
COMMD4-204ENST00000561662 MEX3CQ5U5Q3 659 aaKnown RBP28.64■■■□□ 2.18
COMMD4-204ENST00000561662 LRP6O75581 1613 aa28.64■■■□□ 2.18
COMMD4-204ENST00000561662 COL16A1Q07092 1604 aaPredicted RBP28.61■■■□□ 2.17
COMMD4-204ENST00000561662 PPP1R15AO75807 674 aaPredicted RBP28.61■■■□□ 2.17
COMMD4-204ENST00000561662 C14orf37Q86TY3 774 aa28.61■■■□□ 2.17
COMMD4-204ENST00000561662 ANKRD30AQ9BXX3 1397 aa28.61■■■□□ 2.17
COMMD4-204ENST00000561662 UPF1Q92900 1129 aaKnown RBP eCLIP28.6■■■□□ 2.17
COMMD4-204ENST00000561662 SLC52A1Q9NWF4 448 aa28.59■■■□□ 2.17
COMMD4-204ENST00000561662 NUTM2DQ5VT03 806 aaPredicted RBP28.57■■■□□ 2.16
COMMD4-204ENST00000561662 PLEKHG1Q9ULL1 1385 aa28.57■■■□□ 2.16
COMMD4-204ENST00000561662 ZFYVE9O95405 1425 aa28.57■■■□□ 2.16
COMMD4-204ENST00000561662 CHD2O14647 1828 aaKnown RBP28.56■■■□□ 2.16
COMMD4-204ENST00000561662 MYO5BQ9ULV0 1848 aa28.56■■■□□ 2.16
COMMD4-204ENST00000561662 RIMS2Q9UQ26 1411 aa28.56■■■□□ 2.16
COMMD4-204ENST00000561662 FGD6Q6ZV73 1430 aa28.55■■■□□ 2.16
COMMD4-204ENST00000561662 SPATA31A6Q5VVP1 1343 aa28.53■■■□□ 2.16
COMMD4-204ENST00000561662 CHGAP10645 457 aaKnown RBP28.53■■■□□ 2.16
COMMD4-204ENST00000561662 ZNF772Q68DY9 489 aaPredicted RBP28.53■■■□□ 2.16
COMMD4-204ENST00000561662 NUTM2BA6NNL0 878 aaPredicted RBP28.51■■■□□ 2.15
COMMD4-204ENST00000561662 NUTM2EB1AL46 878 aaPredicted RBP28.51■■■□□ 2.15
COMMD4-204ENST00000561662 NUTM2AQ8IVF1 878 aaPredicted RBP28.51■■■□□ 2.15
COMMD4-204ENST00000561662 GCC2Q8IWJ2 1684 aa28.51■■■□□ 2.15
COMMD4-204ENST00000561662 APLP2Q06481 763 aa28.49■■■□□ 2.15
COMMD4-204ENST00000561662 TBX22Q9Y458 520 aa28.48■■■□□ 2.15
COMMD4-204ENST00000561662 ATF3P18847 181 aa28.47■■■□□ 2.15
COMMD4-204ENST00000561662 RXRBP28702 533 aa28.46■■■□□ 2.15
COMMD4-204ENST00000561662 TMEM131LA2VDJ0 1609 aa28.45■■■□□ 2.14
COMMD4-204ENST00000561662 HDGFP51858 240 aaKnown RBP28.45■■■□□ 2.14
COMMD4-204ENST00000561662 CADPS2Q86UW7 1296 aa28.45■■■□□ 2.14
COMMD4-204ENST00000561662 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.45■■■□□ 2.14
COMMD4-204ENST00000561662 C19orf44Q9H6X5 657 aa28.44■■■□□ 2.14
COMMD4-204ENST00000561662 AHDC1Q5TGY3 1603 aaPredicted RBP28.43■■■□□ 2.14
COMMD4-204ENST00000561662 RPRD2Q5VT52 1461 aaKnown RBP28.43■■■□□ 2.14
COMMD4-204ENST00000561662 ADAMTS13Q76LX8 1427 aa28.43■■■□□ 2.14
COMMD4-204ENST00000561662 NCOA3Q9Y6Q9 1424 aa28.42■■■□□ 2.14
COMMD4-204ENST00000561662 SHPRHQ149N8 1683 aa28.42■■■□□ 2.14
COMMD4-204ENST00000561662 FAM50AQ14320 339 aaKnown RBP28.41■■■□□ 2.14
COMMD4-204ENST00000561662 BRINP3Q76B58 766 aa28.41■■■□□ 2.14
COMMD4-204ENST00000561662 ANKRD50Q9ULJ7 1429 aa28.41■■■□□ 2.14
COMMD4-204ENST00000561662 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.39■■■□□ 2.14
COMMD4-204ENST00000561662 ADGRL2O95490 1459 aa28.38■■■□□ 2.13
COMMD4-204ENST00000561662 AFF2P51816 1311 aa28.38■■■□□ 2.13
COMMD4-204ENST00000561662 AMOTL2Q9Y2J4 779 aa28.36■■■□□ 2.13
COMMD4-204ENST00000561662 DIP2AQ14689 1571 aa28.35■■■□□ 2.13
COMMD4-204ENST00000561662 PTPRUQ92729 1446 aa28.35■■■□□ 2.13
COMMD4-204ENST00000561662 SRCAPQ6ZRS2 3230 aa28.33■■■□□ 2.13
COMMD4-204ENST00000561662 DDX17Q92841 729 aaKnown RBP28.3■■■□□ 2.12
COMMD4-204ENST00000561662 PIK3R4Q99570 1358 aa28.29■■■□□ 2.12
COMMD4-204ENST00000561662 C8orf37Q96NL8 207 aa28.29■■■□□ 2.12
COMMD4-204ENST00000561662 ASXL1Q8IXJ9 1541 aa28.28■■■□□ 2.12
COMMD4-204ENST00000561662 TRPM2O94759 1503 aa28.28■■■□□ 2.12
COMMD4-204ENST00000561662 CDK12Q9NYV4 1490 aaPredicted RBP28.27■■■□□ 2.12
COMMD4-204ENST00000561662 E9PCH4 1651 aa28.27■■■□□ 2.12
COMMD4-204ENST00000561662 RGS12O14924 1447 aa28.26■■■□□ 2.11
COMMD4-204ENST00000561662 QTRT2Q9H974 415 aaKnown RBP28.25■■■□□ 2.11
COMMD4-204ENST00000561662 SETD5Q9C0A6 1442 aa28.23■■■□□ 2.11
COMMD4-204ENST00000561662 UNC13BO14795 1591 aa28.22■■■□□ 2.11
COMMD4-204ENST00000561662 MST1RQ04912 1400 aa28.22■■■□□ 2.11
COMMD4-204ENST00000561662 LRRC59Q96AG4 307 aaKnown RBP28.2■■■□□ 2.1
COMMD4-204ENST00000561662 DCCP43146 1447 aa28.19■■■□□ 2.1
COMMD4-204ENST00000561662 ADAMTS2O95450 1211 aa28.19■■■□□ 2.1
COMMD4-204ENST00000561662 RBM6P78332 1123 aaKnown RBP28.19■■■□□ 2.1
COMMD4-204ENST00000561662 NHSL1Q5SYE7 1610 aa28.18■■■□□ 2.1
COMMD4-204ENST00000561662 PNPLA6Q8IY17 1366 aa28.17■■■□□ 2.1
COMMD4-204ENST00000561662 XRN1Q8IZH2 1706 aaKnown RBP28.16■■■□□ 2.1
COMMD4-204ENST00000561662 METP08581 1390 aa28.15■■■□□ 2.1
COMMD4-204ENST00000561662 NRXN3Q9Y4C0 1643 aa28.15■■■□□ 2.1
COMMD4-204ENST00000561662 ZNF326Q5BKZ1 582 aaKnown RBP28.14■■■□□ 2.1
COMMD4-204ENST00000561662 NGLY1Q96IV0 654 aa28.14■■■□□ 2.1
COMMD4-204ENST00000561662 NUP155O75694 1391 aa28.13■■■□□ 2.09
COMMD4-204ENST00000561662 IQGAP3Q86VI3 1631 aa28.12■■■□□ 2.09
COMMD4-204ENST00000561662 SETBP1Q9Y6X0 1596 aa28.08■■■□□ 2.09
COMMD4-204ENST00000561662 ADGRL3Q9HAR2 1447 aa28.08■■■□□ 2.09
COMMD4-204ENST00000561662 ITGAEP38570 1179 aa28.07■■■□□ 2.08
COMMD4-204ENST00000561662 NALCNQ8IZF0 1738 aa28.06■■■□□ 2.08
COMMD4-204ENST00000561662 ATAD2Q6PL18 1390 aa28.03■■■□□ 2.08
COMMD4-204ENST00000561662 USP21Q9UK80 565 aa28.03■■■□□ 2.08
COMMD4-204ENST00000561662 ORAI2Q96SN7 254 aa28.02■■■□□ 2.08
COMMD4-204ENST00000561662 C1orf167Q5SNV9 1468 aa28.02■■■□□ 2.08
COMMD4-204ENST00000561662 ROCK1Q13464 1354 aa28■■■□□ 2.07
COMMD4-204ENST00000561662 SPHKAPQ2M3C7 1700 aa27.96■■■□□ 2.07
COMMD4-204ENST00000561662 ZRANB1Q9UGI0 708 aa27.96■■■□□ 2.07
COMMD4-204ENST00000561662 TRPC5Q9UL62 973 aaPredicted RBP27.96■■■□□ 2.07
COMMD4-204ENST00000561662 EP400Q96L91 3159 aa27.95■■■□□ 2.07
COMMD4-204ENST00000561662 SOS2Q07890 1332 aaPredicted RBP27.93■■■□□ 2.06
COMMD4-204ENST00000561662 NEXMIFQ5QGS0 1516 aa27.92■■■□□ 2.06
COMMD4-204ENST00000561662 ROBO2Q9HCK4 1378 aa27.92■■■□□ 2.06
COMMD4-204ENST00000561662 FNBP4Q8N3X1 1017 aaPredicted RBP27.91■■■□□ 2.06
COMMD4-204ENST00000561662 ATRNO75882 1429 aa27.9■■■□□ 2.06
COMMD4-204ENST00000561662 CLTCL1P53675 1640 aa27.89■■■□□ 2.06
COMMD4-204ENST00000561662 PTCH1Q13635 1447 aa27.87■■■□□ 2.05
COMMD4-204ENST00000561662 LAMC1P11047 1609 aa27.87■■■□□ 2.05
COMMD4-204ENST00000561662 XPCQ01831 940 aaPredicted RBP27.86■■■□□ 2.05
COMMD4-204ENST00000561662 PPARGC1BQ86YN6 1023 aaKnown RBP27.84■■■□□ 2.05
COMMD4-204ENST00000561662 FOXD1Q16676 465 aa27.82■■■□□ 2.04
COMMD4-204ENST00000561662 ESCO1Q5FWF5 840 aa27.81■■■□□ 2.04
COMMD4-204ENST00000561662 BCL9LQ86UU0 1499 aa27.81■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms