RNA–Protein interactions for RNA: ENST00000561514.1

PALB2-202, Transcript of partner and localizer of BRCA2, humanhuman

TSL 5

Gene PALB2, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-202ENST00000561514 UNC13BO14795 1591 aa13.06□□□□□ -0.32
PALB2-202ENST00000561514 XIRP1Q702N8 1843 aaKnown RBP13.06□□□□□ -0.32
PALB2-202ENST00000561514 PIAS4Q8N2W9 510 aaPredicted RBP13.05□□□□□ -0.32
PALB2-202ENST00000561514 CFAP65Q6ZU64 1925 aaKnown RBP13.03□□□□□ -0.32
PALB2-202ENST00000561514 SLC26A8Q96RN1 970 aa13.03□□□□□ -0.32
PALB2-202ENST00000561514 RIMS2Q9UQ26 1411 aa13.03□□□□□ -0.32
PALB2-202ENST00000561514 FAM50AQ14320 339 aaKnown RBP13.02□□□□□ -0.33
PALB2-202ENST00000561514 NCOA3Q9Y6Q9 1424 aa13.02□□□□□ -0.33
PALB2-202ENST00000561514 TMEM131LA2VDJ0 1609 aa13.02□□□□□ -0.33
PALB2-202ENST00000561514 RGS17Q9UGC6 210 aaPredicted RBP13.01□□□□□ -0.33
PALB2-202ENST00000561514 ADAMTS13Q76LX8 1427 aa13□□□□□ -0.33
PALB2-202ENST00000561514 PROSER2Q86WR7 435 aaPredicted RBP13□□□□□ -0.33
PALB2-202ENST00000561514 TBX22Q9Y458 520 aa13□□□□□ -0.33
PALB2-202ENST00000561514 IQGAP3Q86VI3 1631 aa12.99□□□□□ -0.33
PALB2-202ENST00000561514 PIK3R4Q99570 1358 aa12.99□□□□□ -0.33
PALB2-202ENST00000561514 GCC2Q8IWJ2 1684 aa12.99□□□□□ -0.33
PALB2-202ENST00000561514 DIP2AQ14689 1571 aa12.98□□□□□ -0.33
PALB2-202ENST00000561514 MSH6P52701 1360 aa12.98□□□□□ -0.33
PALB2-202ENST00000561514 HDGFP51858 240 aaKnown RBP12.98□□□□□ -0.33
PALB2-202ENST00000561514 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.98□□□□□ -0.33
PALB2-202ENST00000561514 ROBO1Q9Y6N7 1651 aa12.96□□□□□ -0.33
PALB2-202ENST00000561514 E9PCH4 1651 aa12.96□□□□□ -0.34
PALB2-202ENST00000561514 PPP1R15AO75807 674 aaPredicted RBP12.94□□□□□ -0.34
PALB2-202ENST00000561514 RBM33Q96EV2 1170 aaKnown RBP12.94□□□□□ -0.34
PALB2-202ENST00000561514 SLAIN2Q9P270 581 aa12.94□□□□□ -0.34
PALB2-202ENST00000561514 NUP155O75694 1391 aa12.94□□□□□ -0.34
PALB2-202ENST00000561514 CHD2O14647 1828 aaKnown RBP12.93□□□□□ -0.34
PALB2-202ENST00000561514 JCADQ9P266 1359 aa12.93□□□□□ -0.34
PALB2-202ENST00000561514 PELP1Q8IZL8 1130 aaKnown RBP12.92□□□□□ -0.34
PALB2-202ENST00000561514 SETBP1Q9Y6X0 1596 aa12.91□□□□□ -0.34
PALB2-202ENST00000561514 DCCP43146 1447 aa12.91□□□□□ -0.34
PALB2-202ENST00000561514 PTPRUQ92729 1446 aa12.91□□□□□ -0.34
PALB2-202ENST00000561514 TRPM2O94759 1503 aa12.9□□□□□ -0.34
PALB2-202ENST00000561514 POTEAQ6S8J7 498 aa12.9□□□□□ -0.34
PALB2-202ENST00000561514 BCANQ96GW7 911 aa12.9□□□□□ -0.34
PALB2-202ENST00000561514 COL16A1Q07092 1604 aaPredicted RBP12.9□□□□□ -0.34
PALB2-202ENST00000561514 AHDC1Q5TGY3 1603 aaPredicted RBP12.9□□□□□ -0.34
PALB2-202ENST00000561514 MYO5BQ9ULV0 1848 aa12.9□□□□□ -0.34
PALB2-202ENST00000561514 C19orf44Q9H6X5 657 aa12.89□□□□□ -0.35
PALB2-202ENST00000561514 RRBP1Q9P2E9 1410 aaKnown RBP12.88□□□□□ -0.35
PALB2-202ENST00000561514 NRXN3Q9Y4C0 1643 aa12.88□□□□□ -0.35
PALB2-202ENST00000561514 CADPS2Q86UW7 1296 aa12.88□□□□□ -0.35
PALB2-202ENST00000561514 CHGAP10645 457 aaKnown RBP12.87□□□□□ -0.35
PALB2-202ENST00000561514 XRN1Q8IZH2 1706 aaKnown RBP12.87□□□□□ -0.35
PALB2-202ENST00000561514 SPATA31A6Q5VVP1 1343 aa12.87□□□□□ -0.35
PALB2-202ENST00000561514 MYT1Q01538 1121 aa12.86□□□□□ -0.35
PALB2-202ENST00000561514 AMOTL2Q9Y2J4 779 aa12.86□□□□□ -0.35
PALB2-202ENST00000561514 LRP6O75581 1613 aa12.85□□□□□ -0.35
PALB2-202ENST00000561514 NAIPQ13075 1403 aa12.85□□□□□ -0.35
PALB2-202ENST00000561514 PRAG1Q86YV5 1406 aa12.85□□□□□ -0.35
PALB2-202ENST00000561514 PHLPP1O60346 1717 aa12.85□□□□□ -0.35
PALB2-202ENST00000561514 NUTM2DQ5VT03 806 aaPredicted RBP12.84□□□□□ -0.35
PALB2-202ENST00000561514 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.84□□□□□ -0.35
PALB2-202ENST00000561514 NEXMIFQ5QGS0 1516 aa12.83□□□□□ -0.35
PALB2-202ENST00000561514 METP08581 1390 aa12.83□□□□□ -0.36
PALB2-202ENST00000561514 MST1RQ04912 1400 aa12.83□□□□□ -0.36
PALB2-202ENST00000561514 ATF3P18847 181 aa12.83□□□□□ -0.36
PALB2-202ENST00000561514 BRINP3Q76B58 766 aa12.83□□□□□ -0.36
PALB2-202ENST00000561514 SPHKAPQ2M3C7 1700 aa12.82□□□□□ -0.36
PALB2-202ENST00000561514 SETD5Q9C0A6 1442 aa12.82□□□□□ -0.36
PALB2-202ENST00000561514 ADGRL3Q9HAR2 1447 aa12.82□□□□□ -0.36
PALB2-202ENST00000561514 ASXL1Q8IXJ9 1541 aa12.82□□□□□ -0.36
PALB2-202ENST00000561514 CLTCL1P53675 1640 aa12.81□□□□□ -0.36
PALB2-202ENST00000561514 SHPRHQ149N8 1683 aa12.81□□□□□ -0.36
PALB2-202ENST00000561514 C14orf37Q86TY3 774 aa12.81□□□□□ -0.36
PALB2-202ENST00000561514 HFM1A2PYH4 1435 aa12.8□□□□□ -0.36
PALB2-202ENST00000561514 PTCH1Q13635 1447 aa12.8□□□□□ -0.36
PALB2-202ENST00000561514 ITGAEP38570 1179 aa12.8□□□□□ -0.36
PALB2-202ENST00000561514 ZNF772Q68DY9 489 aaPredicted RBP12.77□□□□□ -0.37
PALB2-202ENST00000561514 CDK12Q9NYV4 1490 aaPredicted RBP12.77□□□□□ -0.37
PALB2-202ENST00000561514 NHSL1Q5SYE7 1610 aa12.77□□□□□ -0.37
PALB2-202ENST00000561514 ZNF326Q5BKZ1 582 aaKnown RBP12.76□□□□□ -0.37
PALB2-202ENST00000561514 LAMC1P11047 1609 aa12.75□□□□□ -0.37
PALB2-202ENST00000561514 RPGRIP1LQ68CZ1 1315 aa12.75□□□□□ -0.37
PALB2-202ENST00000561514 C1orf167Q5SNV9 1468 aa12.74□□□□□ -0.37
PALB2-202ENST00000561514 PNPLA6Q8IY17 1366 aa12.74□□□□□ -0.37
PALB2-202ENST00000561514 PPARGC1BQ86YN6 1023 aaKnown RBP12.74□□□□□ -0.37
PALB2-202ENST00000561514 SETD1AO15047 1707 aaKnown RBP12.74□□□□□ -0.37
PALB2-202ENST00000561514 ROBO2Q9HCK4 1378 aa12.73□□□□□ -0.37
PALB2-202ENST00000561514 VGFO15240 615 aaPredicted RBP12.73□□□□□ -0.37
PALB2-202ENST00000561514 NALCNQ8IZF0 1738 aa12.72□□□□□ -0.37
PALB2-202ENST00000561514 LRRC59Q96AG4 307 aaKnown RBP12.72□□□□□ -0.37
PALB2-202ENST00000561514 MEX3CQ5U5Q3 659 aaKnown RBP12.71□□□□□ -0.37
PALB2-202ENST00000561514 SOS2Q07890 1332 aaPredicted RBP12.7□□□□□ -0.38
PALB2-202ENST00000561514 TECPR2O15040 1411 aa12.7□□□□□ -0.38
PALB2-202ENST00000561514 UPF1Q92900 1129 aaKnown RBP eCLIP12.69□□□□□ -0.38
PALB2-202ENST00000561514 SPATA31E1Q6ZUB1 1445 aa12.69□□□□□ -0.38
PALB2-202ENST00000561514 AFF2P51816 1311 aa12.68□□□□□ -0.38
PALB2-202ENST00000561514 RXRBP28702 533 aa12.68□□□□□ -0.38
PALB2-202ENST00000561514 SLC4A1APQ9BWU0 796 aaKnown RBP12.68□□□□□ -0.38
PALB2-202ENST00000561514 CDC42BPGQ6DT37 1551 aa12.68□□□□□ -0.38
PALB2-202ENST00000561514 KIF1BO60333 1816 aa12.67□□□□□ -0.38
PALB2-202ENST00000561514 DDX17Q92841 729 aaKnown RBP12.67□□□□□ -0.38
PALB2-202ENST00000561514 RGS12O14924 1447 aa12.65□□□□□ -0.38
PALB2-202ENST00000561514 NUTM2BA6NNL0 878 aaPredicted RBP12.65□□□□□ -0.38
PALB2-202ENST00000561514 NUTM2EB1AL46 878 aaPredicted RBP12.65□□□□□ -0.38
PALB2-202ENST00000561514 NUTM2AQ8IVF1 878 aaPredicted RBP12.65□□□□□ -0.38
PALB2-202ENST00000561514 PPLO60437 1756 aa12.65□□□□□ -0.38
PALB2-202ENST00000561514 ANKRD30BQ9BXX2 1392 aa12.65□□□□□ -0.38
PALB2-202ENST00000561514 MYOM2P54296 1465 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms