RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 POTEEQ6S8J3 1075 aa10.79□□□□□ -0.68
LRRC28-220ENST00000561253 BAZ1BQ9UIG0 1483 aaKnown RBP10.79□□□□□ -0.68
LRRC28-220ENST00000561253 RCCD1A6NED2 376 aa10.78□□□□□ -0.68
LRRC28-220ENST00000561253 SSTR3P32745 418 aaPredicted RBP10.78□□□□□ -0.68
LRRC28-220ENST00000561253 HS3ST6Q96QI5 342 aa10.78□□□□□ -0.68
LRRC28-220ENST00000561253 KIAA1468Q9P260 1216 aa10.78□□□□□ -0.68
LRRC28-220ENST00000561253 SMAPO00193 183 aa10.77□□□□□ -0.69
LRRC28-220ENST00000561253 DMRTA1Q5VZB9 504 aa10.77□□□□□ -0.69
LRRC28-220ENST00000561253 PLEKHG3A1L390 1219 aa10.76□□□□□ -0.69
LRRC28-220ENST00000561253 C3orf80F5H4A9 247 aa10.76□□□□□ -0.69
LRRC28-220ENST00000561253 DNAJB2P25686 324 aa10.76□□□□□ -0.69
LRRC28-220ENST00000561253 SLC4A5Q9BY07 1137 aa10.76□□□□□ -0.69
LRRC28-220ENST00000561253 FAM217BQ9NTX9 383 aaPredicted RBP10.76□□□□□ -0.69
LRRC28-220ENST00000561253 RABGEF1Q9UJ41 708 aa10.75□□□□□ -0.69
LRRC28-220ENST00000561253 POTEB3A0JP26 581 aa10.73□□□□□ -0.69
LRRC28-220ENST00000561253 POTEBQ6S5H4 581 aa10.73□□□□□ -0.69
LRRC28-220ENST00000561253 TOP2AP11388 1531 aaKnown RBP10.73□□□□□ -0.69
LRRC28-220ENST00000561253 LCE2DQ5TA82 110 aaPredicted RBP10.72□□□□□ -0.69
LRRC28-220ENST00000561253 BEGAINQ9BUH8 593 aa10.72□□□□□ -0.69
LRRC28-220ENST00000561253 TMEM134Q9H6X4 195 aa10.72□□□□□ -0.69
LRRC28-220ENST00000561253 VPS9D1Q9Y2B5 631 aa10.72□□□□□ -0.69
LRRC28-220ENST00000561253 SULF1Q8IWU6 871 aa10.7□□□□□ -0.7
LRRC28-220ENST00000561253 SEPT9Q9UHD8 586 aaPredicted RBP10.7□□□□□ -0.7
LRRC28-220ENST00000561253 DDX11L8A8MPP1 907 aa10.68□□□□□ -0.7
LRRC28-220ENST00000561253 TK2O00142 265 aa10.68□□□□□ -0.7
LRRC28-220ENST00000561253 NBPF3Q9H094 633 aa10.68□□□□□ -0.7
LRRC28-220ENST00000561253 HDGFP51858 240 aaKnown RBP10.67□□□□□ -0.7
LRRC28-220ENST00000561253 RSPH6AQ9H0K4 717 aa10.67□□□□□ -0.7
LRRC28-220ENST00000561253 LSM11P83369 360 aaKnown RBP eCLIP10.66□□□□□ -0.7
LRRC28-220ENST00000561253 FAM98CQ17RN3 349 aaKnown RBP10.66□□□□□ -0.7
LRRC28-220ENST00000561253 GOPCQ9HD26 462 aa10.66□□□□□ -0.7
LRRC28-220ENST00000561253 CD46P15529 392 aa10.64□□□□□ -0.71
LRRC28-220ENST00000561253 SLC4A3P48751 1232 aa10.64□□□□□ -0.71
LRRC28-220ENST00000561253 SH3D19Q5HYK7 790 aa10.64□□□□□ -0.71
LRRC28-220ENST00000561253 SWT1Q5T5J6 900 aaKnown RBP10.64□□□□□ -0.71
LRRC28-220ENST00000561253 RSPH4AQ5TD94 716 aa10.64□□□□□ -0.71
LRRC28-220ENST00000561253 LAPTM4BQ86VI4 370 aa10.64□□□□□ -0.71
LRRC28-220ENST00000561253 RDH13Q8NBN7 331 aa10.64□□□□□ -0.71
LRRC28-220ENST00000561253 DIXDC1Q155Q3 683 aa10.63□□□□□ -0.71
LRRC28-220ENST00000561253 ADGRD1Q6QNK2 874 aa10.63□□□□□ -0.71
LRRC28-220ENST00000561253 MRPL50Q8N5N7 158 aaKnown RBP10.63□□□□□ -0.71
LRRC28-220ENST00000561253 PCMTD1Q96MG8 357 aaPredicted RBP10.63□□□□□ -0.71
LRRC28-220ENST00000561253 ATP1B4Q9UN42 357 aaPredicted RBP10.63□□□□□ -0.71
LRRC28-220ENST00000561253 BHMG1C9JSJ3 638 aaPredicted RBP10.62□□□□□ -0.71
LRRC28-220ENST00000561253 CCDC88BA6NC98 1476 aa10.61□□□□□ -0.71
LRRC28-220ENST00000561253 ANKRD13DQ6ZTN6 518 aa10.61□□□□□ -0.71
LRRC28-220ENST00000561253 ERICH6Q7L0X2 663 aa10.61□□□□□ -0.71
LRRC28-220ENST00000561253 NUTM1Q86Y26 1132 aa10.61□□□□□ -0.71
LRRC28-220ENST00000561253 STAC3Q96MF2 364 aa10.61□□□□□ -0.71
LRRC28-220ENST00000561253 TBC1D2Q9BYX2 928 aa10.61□□□□□ -0.71
LRRC28-220ENST00000561253 SUPT5HO00267 1087 aaKnown RBP10.6□□□□□ -0.71
LRRC28-220ENST00000561253 SKIV2LQ15477 1246 aaKnown RBP10.6□□□□□ -0.71
LRRC28-220ENST00000561253 SAMD7Q7Z3H4 446 aa10.6□□□□□ -0.71
LRRC28-220ENST00000561253 MYSM1Q5VVJ2 828 aa10.59□□□□□ -0.71
LRRC28-220ENST00000561253 SLF2Q8IX21 1173 aa10.59□□□□□ -0.71
LRRC28-220ENST00000561253 NESP48681 1621 aa10.58□□□□□ -0.72
LRRC28-220ENST00000561253 CADPSQ9ULU8 1353 aa10.58□□□□□ -0.72
LRRC28-220ENST00000561253 SPIRE2Q8WWL2 714 aa10.58□□□□□ -0.72
LRRC28-220ENST00000561253 ZFRQ96KR1 1074 aaKnown RBP10.58□□□□□ -0.72
LRRC28-220ENST00000561253 POLR3EQ9NVU0 708 aa10.58□□□□□ -0.72
LRRC28-220ENST00000561253 GOLGA8CPA6NN73 597 aa10.57□□□□□ -0.72
LRRC28-220ENST00000561253 HRO43593 1189 aa10.57□□□□□ -0.72
LRRC28-220ENST00000561253 RNF40O75150 1001 aa10.57□□□□□ -0.72
LRRC28-220ENST00000561253 CFTRP13569 1480 aa10.56□□□□□ -0.72
LRRC28-220ENST00000561253 CLK2P49760 499 aaKnown RBP10.56□□□□□ -0.72
LRRC28-220ENST00000561253 SLC10A3P09131 477 aa10.55□□□□□ -0.72
LRRC28-220ENST00000561253 C14orf37Q86TY3 774 aa10.55□□□□□ -0.72
LRRC28-220ENST00000561253 TIMELESSQ9UNS1 1208 aa10.55□□□□□ -0.72
LRRC28-220ENST00000561253 KDM4AO75164 1064 aa10.54□□□□□ -0.72
LRRC28-220ENST00000561253 GCGRP47871 477 aa10.54□□□□□ -0.72
LRRC28-220ENST00000561253 PROCA1Q8NCQ7 364 aaPredicted RBP10.54□□□□□ -0.72
LRRC28-220ENST00000561253 LRCH3Q96II8 777 aa10.54□□□□□ -0.72
LRRC28-220ENST00000561253 LAMC3Q9Y6N6 1575 aa10.54□□□□□ -0.72
LRRC28-220ENST00000561253 RIC3Q7Z5B4 369 aa10.53□□□□□ -0.72
LRRC28-220ENST00000561253 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.53□□□□□ -0.72
LRRC28-220ENST00000561253 ANKK1Q8NFD2 765 aa10.52□□□□□ -0.73
LRRC28-220ENST00000561253 NECTIN2Q92692 538 aa10.52□□□□□ -0.73
LRRC28-220ENST00000561253 USP46P62068 366 aa10.51□□□□□ -0.73
LRRC28-220ENST00000561253 CFHP08603 1231 aa10.5□□□□□ -0.73
LRRC28-220ENST00000561253 RSBN1LQ6PCB5 846 aaPredicted RBP10.5□□□□□ -0.73
LRRC28-220ENST00000561253 LIMD1Q9UGP4 676 aa10.5□□□□□ -0.73
LRRC28-220ENST00000561253 MOXD2PA6NHM9 499 aa10.49□□□□□ -0.73
LRRC28-220ENST00000561253 SPTLC1O15269 473 aa10.49□□□□□ -0.73
LRRC28-220ENST00000561253 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.49□□□□□ -0.73
LRRC28-220ENST00000561253 KRTAP3-3Q9BYR6 98 aa10.49□□□□□ -0.73
LRRC28-220ENST00000561253 KRTAP3-2Q9BYR7 98 aa10.49□□□□□ -0.73
LRRC28-220ENST00000561253 NDUFV2P19404 249 aa10.48□□□□□ -0.73
LRRC28-220ENST00000561253 KMT5BQ4FZB7 885 aa10.48□□□□□ -0.73
LRRC28-220ENST00000561253 HOXA2O43364 376 aa10.47□□□□□ -0.73
LRRC28-220ENST00000561253 GJA5P36382 358 aa10.47□□□□□ -0.73
LRRC28-220ENST00000561253 CSPP1Q1MSJ5 1256 aa10.47□□□□□ -0.73
LRRC28-220ENST00000561253 GRIPAP1Q4V328 841 aa10.47□□□□□ -0.73
LRRC28-220ENST00000561253 POTEGQ6S5H5 508 aa10.47□□□□□ -0.73
LRRC28-220ENST00000561253 WNT2BQ93097 391 aa10.47□□□□□ -0.73
LRRC28-220ENST00000561253 TUSC1Q2TAM9 212 aa10.46□□□□□ -0.73
LRRC28-220ENST00000561253 PDS5BQ9NTI5 1447 aa10.46□□□□□ -0.74
LRRC28-220ENST00000561253 SOWAHBA6NEL2 793 aa10.45□□□□□ -0.74
LRRC28-220ENST00000561253 PPP4CP60510 307 aa10.45□□□□□ -0.74
LRRC28-220ENST00000561253 FUT2Q10981 343 aa10.45□□□□□ -0.74
LRRC28-220ENST00000561253 POTEMA6NI47 508 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms