RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 MED14O60244 1454 aa31.85■■■□□ 2.69
SNX1-210ENST00000560260 IFT172Q9UG01 1749 aa31.84■■■□□ 2.69
SNX1-210ENST00000560260 ZNF326Q5BKZ1 582 aaKnown RBP31.84■■■□□ 2.69
SNX1-210ENST00000560260 TXNDC2Q86VQ3 553 aa31.84■■■□□ 2.69
SNX1-210ENST00000560260 PPLO60437 1756 aa31.84■■■□□ 2.69
SNX1-210ENST00000560260 NPHP4O75161 1426 aaPredicted RBP31.81■■■□□ 2.68
SNX1-210ENST00000560260 NUTM2DQ5VT03 806 aaPredicted RBP31.81■■■□□ 2.68
SNX1-210ENST00000560260 SIN3AQ96ST3 1273 aa31.81■■■□□ 2.68
SNX1-210ENST00000560260 IQGAP1P46940 1657 aa31.81■■■□□ 2.68
SNX1-210ENST00000560260 RGL3Q3MIN7 710 aa31.8■■■□□ 2.68
SNX1-210ENST00000560260 EID1Q9Y6B2 187 aa31.78■■■□□ 2.68
SNX1-210ENST00000560260 PLEKHG1Q9ULL1 1385 aa31.75■■■□□ 2.67
SNX1-210ENST00000560260 RPGRIP1LQ68CZ1 1315 aa31.74■■■□□ 2.67
SNX1-210ENST00000560260 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.74■■■□□ 2.67
SNX1-210ENST00000560260 NRXN3Q9Y4C0 1643 aa31.73■■■□□ 2.67
SNX1-210ENST00000560260 PPP1R15AO75807 674 aaPredicted RBP31.72■■■□□ 2.67
SNX1-210ENST00000560260 SENP3Q9H4L4 574 aaPredicted RBP31.72■■■□□ 2.67
SNX1-210ENST00000560260 SETBP1Q9Y6X0 1596 aa31.69■■■□□ 2.66
SNX1-210ENST00000560260 NEUROD1Q13562 356 aa31.69■■■□□ 2.66
SNX1-210ENST00000560260 HDGFP51858 240 aaKnown RBP31.68■■■□□ 2.66
SNX1-210ENST00000560260 MYOM2P54296 1465 aa31.67■■■□□ 2.66
SNX1-210ENST00000560260 ADAMTS13Q76LX8 1427 aa31.67■■■□□ 2.66
SNX1-210ENST00000560260 DMRT2Q9Y5R5 561 aa31.66■■■□□ 2.66
SNX1-210ENST00000560260 ADGRF5Q8IZF2 1346 aa31.66■■■□□ 2.66
SNX1-210ENST00000560260 NRXN1Q9ULB1 1477 aa31.63■■■□□ 2.65
SNX1-210ENST00000560260 CCER1Q8TC90 406 aaPredicted RBP31.63■■■□□ 2.65
SNX1-210ENST00000560260 VGFO15240 615 aaPredicted RBP31.62■■■□□ 2.65
SNX1-210ENST00000560260 SETD1AO15047 1707 aaKnown RBP31.61■■■□□ 2.65
SNX1-210ENST00000560260 SLC26A8Q96RN1 970 aa31.61■■■□□ 2.65
SNX1-210ENST00000560260 DIP2AQ14689 1571 aa31.6■■■□□ 2.65
SNX1-210ENST00000560260 CLSPNQ9HAW4 1339 aa31.6■■■□□ 2.65
SNX1-210ENST00000560260 PIK3C2GO75747 1445 aa31.6■■■□□ 2.65
SNX1-210ENST00000560260 DCAF11Q8TEB1 546 aa31.58■■■□□ 2.65
SNX1-210ENST00000560260 BCANQ96GW7 911 aa31.57■■■□□ 2.64
SNX1-210ENST00000560260 L3MBTL2Q969R5 705 aa31.56■■■□□ 2.64
SNX1-210ENST00000560260 ALKQ9UM73 1620 aa31.56■■■□□ 2.64
SNX1-210ENST00000560260 STRCP1A6NGW2 1772 aa31.55■■■□□ 2.64
SNX1-210ENST00000560260 KDM2AQ9Y2K7 1162 aa31.54■■■□□ 2.64
SNX1-210ENST00000560260 ZNF335Q9H4Z2 1342 aaPredicted RBP31.54■■■□□ 2.64
SNX1-210ENST00000560260 TBX22Q9Y458 520 aa31.51■■■□□ 2.64
SNX1-210ENST00000560260 ASXL1Q8IXJ9 1541 aa31.5■■■□□ 2.63
SNX1-210ENST00000560260 LTBP4Q8N2S1 1624 aa31.5■■■□□ 2.63
SNX1-210ENST00000560260 METP08581 1390 aa31.5■■■□□ 2.63
SNX1-210ENST00000560260 TONSLQ96HA7 1378 aa31.5■■■□□ 2.63
SNX1-210ENST00000560260 NWD1Q149M9 1564 aa31.49■■■□□ 2.63
SNX1-210ENST00000560260 PRAG1Q86YV5 1406 aa31.48■■■□□ 2.63
SNX1-210ENST00000560260 PTPRUQ92729 1446 aa31.48■■■□□ 2.63
SNX1-210ENST00000560260 CHD2O14647 1828 aaKnown RBP31.47■■■□□ 2.63
SNX1-210ENST00000560260 LAMC1P11047 1609 aa31.47■■■□□ 2.63
SNX1-210ENST00000560260 STAC3Q96MF2 364 aa31.45■■■□□ 2.62
SNX1-210ENST00000560260 XRN1Q8IZH2 1706 aaKnown RBP31.43■■■□□ 2.62
SNX1-210ENST00000560260 CFAP70Q5T0N1 1121 aa31.43■■■□□ 2.62
SNX1-210ENST00000560260 PIK3R4Q99570 1358 aa31.43■■■□□ 2.62
SNX1-210ENST00000560260 C14orf93Q9H972 538 aaKnown RBP31.42■■■□□ 2.62
SNX1-210ENST00000560260 ADGRB1O14514 1584 aa31.39■■■□□ 2.62
SNX1-210ENST00000560260 KIAA1210Q9ULL0 1709 aa31.38■■■□□ 2.61
SNX1-210ENST00000560260 KCNA6P17658 529 aa31.38■■■□□ 2.61
SNX1-210ENST00000560260 CPS1P31327 1500 aa31.37■■■□□ 2.61
SNX1-210ENST00000560260 NBPF8Q3BBV2 869 aa31.35■■■□□ 2.61
SNX1-210ENST00000560260 NKTRP30414 1462 aaKnown RBP31.35■■■□□ 2.61
SNX1-210ENST00000560260 TRPM1Q7Z4N2 1603 aa31.35■■■□□ 2.61
SNX1-210ENST00000560260 TMEM132EQ6IEE7 984 aa31.34■■■□□ 2.61
SNX1-210ENST00000560260 AMOTL2Q9Y2J4 779 aa31.32■■■□□ 2.6
SNX1-210ENST00000560260 LRRC7Q96NW7 1537 aa31.32■■■□□ 2.6
SNX1-210ENST00000560260 KNDC1Q76NI1 1749 aa31.3■■■□□ 2.6
SNX1-210ENST00000560260 YTHDC2Q9H6S0 1430 aaKnown RBP31.3■■■□□ 2.6
SNX1-210ENST00000560260 XIRP1Q702N8 1843 aaKnown RBP31.29■■■□□ 2.6
SNX1-210ENST00000560260 LRPPRCP42704 1394 aaKnown RBP31.29■■■□□ 2.6
SNX1-210ENST00000560260 TIMELESSQ9UNS1 1208 aa31.27■■■□□ 2.6
SNX1-210ENST00000560260 NBPF1Q3BBV0 1214 aa31.26■■■□□ 2.6
SNX1-210ENST00000560260 TECPR2O15040 1411 aa31.26■■■□□ 2.6
SNX1-210ENST00000560260 PTCH1Q13635 1447 aa31.25■■■□□ 2.59
SNX1-210ENST00000560260 ROBO2Q9HCK4 1378 aa31.25■■■□□ 2.59
SNX1-210ENST00000560260 RALGAPBQ86X10 1494 aa31.23■■■□□ 2.59
SNX1-210ENST00000560260 RBM33Q96EV2 1170 aaKnown RBP31.23■■■□□ 2.59
SNX1-210ENST00000560260 STK26Q9P289 416 aa31.23■■■□□ 2.59
SNX1-210ENST00000560260 TMEM94Q12767 1356 aa31.22■■■□□ 2.59
SNX1-210ENST00000560260 ABCC11Q96J66 1382 aa31.22■■■□□ 2.59
SNX1-210ENST00000560260 PROSER2Q86WR7 435 aaPredicted RBP31.2■■■□□ 2.58
SNX1-210ENST00000560260 CERKQ8TCT0 537 aa31.19■■■□□ 2.58
SNX1-210ENST00000560260 DLC1Q96QB1 1528 aa31.18■■■□□ 2.58
SNX1-210ENST00000560260 ARHGEF28Q8N1W1 1705 aaKnown RBP31.17■■■□□ 2.58
SNX1-210ENST00000560260 GPRASP1Q5JY77 1395 aa31.17■■■□□ 2.58
SNX1-210ENST00000560260 IQSEC2Q5JU85 1478 aa31.16■■■□□ 2.58
SNX1-210ENST00000560260 ROCK2O75116 1388 aaKnown RBP31.16■■■□□ 2.58
SNX1-210ENST00000560260 PLEKHH1Q9ULM0 1364 aa31.16■■■□□ 2.58
SNX1-210ENST00000560260 NALCNQ8IZF0 1738 aa31.15■■■□□ 2.58
SNX1-210ENST00000560260 TRAK1Q9UPV9 953 aa31.13■■■□□ 2.57
SNX1-210ENST00000560260 FAM135BQ49AJ0 1406 aa31.12■■■□□ 2.57
SNX1-210ENST00000560260 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.1■■■□□ 2.57
SNX1-210ENST00000560260 WAPLQ7Z5K2 1190 aa31.1■■■□□ 2.57
SNX1-210ENST00000560260 NCOA3Q9Y6Q9 1424 aa31.1■■■□□ 2.57
SNX1-210ENST00000560260 ADGRL3Q9HAR2 1447 aa31.07■■■□□ 2.56
SNX1-210ENST00000560260 SIRT1Q96EB6 747 aa31.07■■■□□ 2.56
SNX1-210ENST00000560260 PRAM1Q96QH2 718 aa31.06■■■□□ 2.56
SNX1-210ENST00000560260 CARD11Q9BXL7 1154 aa31.02■■■□□ 2.56
SNX1-210ENST00000560260 MSH6P52701 1360 aa31.01■■■□□ 2.55
SNX1-210ENST00000560260 SAFB2Q14151 953 aaKnown RBP eCLIP31■■■□□ 2.55
SNX1-210ENST00000560260 C14orf37Q86TY3 774 aa30.99■■■□□ 2.55
SNX1-210ENST00000560260 ADGRB2O60241 1585 aa30.98■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms