RNA–Protein interactions for RNA: ENST00000558894.5

SMAD3-209, Transcript of SMAD family member 3, humanhuman

TSL 5

Gene SMAD3, Length 797 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-209ENST00000558894 SLC52A1Q9NWF4 448 aa8.57□□□□□ -1.04
SMAD3-209ENST00000558894 NRXN3Q9Y4C0 1643 aa8.57□□□□□ -1.04
SMAD3-209ENST00000558894 MED1Q15648 1581 aaPredicted RBP8.56□□□□□ -1.04
SMAD3-209ENST00000558894 TOM1O60784 492 aa8.56□□□□□ -1.04
SMAD3-209ENST00000558894 PIP4K2BP78356 416 aa8.55□□□□□ -1.04
SMAD3-209ENST00000558894 EID1Q9Y6B2 187 aa8.55□□□□□ -1.04
SMAD3-209ENST00000558894 ADAMTS13Q76LX8 1427 aa8.54□□□□□ -1.04
SMAD3-209ENST00000558894 RIMS2Q9UQ26 1411 aa8.54□□□□□ -1.04
SMAD3-209ENST00000558894 CLTCL1P53675 1640 aa8.54□□□□□ -1.04
SMAD3-209ENST00000558894 ROBO1Q9Y6N7 1651 aa8.54□□□□□ -1.04
SMAD3-209ENST00000558894 NKTRP30414 1462 aaKnown RBP8.54□□□□□ -1.04
SMAD3-209ENST00000558894 PLEKHG1Q9ULL1 1385 aa8.54□□□□□ -1.04
SMAD3-209ENST00000558894 SLC26A8Q96RN1 970 aa8.54□□□□□ -1.04
SMAD3-209ENST00000558894 NAIPQ13075 1403 aa8.54□□□□□ -1.04
SMAD3-209ENST00000558894 NUP155O75694 1391 aa8.53□□□□□ -1.04
SMAD3-209ENST00000558894 TMEM94Q12767 1356 aa8.53□□□□□ -1.04
SMAD3-209ENST00000558894 KIF1BO60333 1816 aa8.53□□□□□ -1.04
SMAD3-209ENST00000558894 KCNA6P17658 529 aa8.53□□□□□ -1.04
SMAD3-209ENST00000558894 ITGAEP38570 1179 aa8.53□□□□□ -1.04
SMAD3-209ENST00000558894 DIP2AQ14689 1571 aa8.52□□□□□ -1.04
SMAD3-209ENST00000558894 SETD1AO15047 1707 aaKnown RBP8.52□□□□□ -1.05
SMAD3-209ENST00000558894 XRN1Q8IZH2 1706 aaKnown RBP8.52□□□□□ -1.05
SMAD3-209ENST00000558894 STAG3Q9UJ98 1225 aa8.52□□□□□ -1.05
SMAD3-209ENST00000558894 TRPM2O94759 1503 aa8.52□□□□□ -1.05
SMAD3-209ENST00000558894 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.51□□□□□ -1.05
SMAD3-209ENST00000558894 NEXMIFQ5QGS0 1516 aa8.51□□□□□ -1.05
SMAD3-209ENST00000558894 RBM33Q96EV2 1170 aaKnown RBP8.51□□□□□ -1.05
SMAD3-209ENST00000558894 SETBP1Q9Y6X0 1596 aa8.51□□□□□ -1.05
SMAD3-209ENST00000558894 FAM135BQ49AJ0 1406 aa8.5□□□□□ -1.05
SMAD3-209ENST00000558894 PTPRUQ92729 1446 aa8.5□□□□□ -1.05
SMAD3-209ENST00000558894 SCAF1Q9H7N4 1312 aaKnown RBP8.5□□□□□ -1.05
SMAD3-209ENST00000558894 HFM1A2PYH4 1435 aa8.49□□□□□ -1.05
SMAD3-209ENST00000558894 PPLO60437 1756 aa8.49□□□□□ -1.05
SMAD3-209ENST00000558894 TBX22Q9Y458 520 aa8.49□□□□□ -1.05
SMAD3-209ENST00000558894 NUTM2DQ5VT03 806 aaPredicted RBP8.48□□□□□ -1.05
SMAD3-209ENST00000558894 PHLPP1O60346 1717 aa8.48□□□□□ -1.05
SMAD3-209ENST00000558894 IFT172Q9UG01 1749 aa8.48□□□□□ -1.05
SMAD3-209ENST00000558894 PIK3R4Q99570 1358 aa8.48□□□□□ -1.05
SMAD3-209ENST00000558894 COL16A1Q07092 1604 aaPredicted RBP8.47□□□□□ -1.05
SMAD3-209ENST00000558894 PROSER2Q86WR7 435 aaPredicted RBP8.47□□□□□ -1.05
SMAD3-209ENST00000558894 NCOA3Q9Y6Q9 1424 aa8.46□□□□□ -1.05
SMAD3-209ENST00000558894 NALCNQ8IZF0 1738 aa8.46□□□□□ -1.05
SMAD3-209ENST00000558894 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.46□□□□□ -1.06
SMAD3-209ENST00000558894 CHGAP10645 457 aaKnown RBP8.45□□□□□ -1.06
SMAD3-209ENST00000558894 HDGFP51858 240 aaKnown RBP8.45□□□□□ -1.06
SMAD3-209ENST00000558894 RGS17Q9UGC6 210 aaPredicted RBP8.45□□□□□ -1.06
SMAD3-209ENST00000558894 NHSL1Q5SYE7 1610 aa8.44□□□□□ -1.06
SMAD3-209ENST00000558894 AHDC1Q5TGY3 1603 aaPredicted RBP8.44□□□□□ -1.06
SMAD3-209ENST00000558894 PPP1R15AO75807 674 aaPredicted RBP8.44□□□□□ -1.06
SMAD3-209ENST00000558894 METP08581 1390 aa8.44□□□□□ -1.06
SMAD3-209ENST00000558894 MSH6P52701 1360 aa8.44□□□□□ -1.06
SMAD3-209ENST00000558894 SHPRHQ149N8 1683 aa8.43□□□□□ -1.06
SMAD3-209ENST00000558894 BCANQ96GW7 911 aa8.43□□□□□ -1.06
SMAD3-209ENST00000558894 SLAIN2Q9P270 581 aa8.43□□□□□ -1.06
SMAD3-209ENST00000558894 AMOTL2Q9Y2J4 779 aa8.42□□□□□ -1.06
SMAD3-209ENST00000558894 LAMC1P11047 1609 aa8.42□□□□□ -1.06
SMAD3-209ENST00000558894 PRAG1Q86YV5 1406 aa8.41□□□□□ -1.06
SMAD3-209ENST00000558894 LRP6O75581 1613 aa8.4□□□□□ -1.06
SMAD3-209ENST00000558894 DCCP43146 1447 aa8.4□□□□□ -1.06
SMAD3-209ENST00000558894 MST1RQ04912 1400 aa8.4□□□□□ -1.06
SMAD3-209ENST00000558894 SPATA31E1Q6ZUB1 1445 aa8.4□□□□□ -1.06
SMAD3-209ENST00000558894 C19orf44Q9H6X5 657 aa8.4□□□□□ -1.06
SMAD3-209ENST00000558894 ASXL1Q8IXJ9 1541 aa8.39□□□□□ -1.07
SMAD3-209ENST00000558894 FOXD1Q16676 465 aa8.39□□□□□ -1.07
SMAD3-209ENST00000558894 ADGRL3Q9HAR2 1447 aa8.38□□□□□ -1.07
SMAD3-209ENST00000558894 KNDC1Q76NI1 1749 aa8.38□□□□□ -1.07
SMAD3-209ENST00000558894 ZNF326Q5BKZ1 582 aaKnown RBP8.38□□□□□ -1.07
SMAD3-209ENST00000558894 SLC4A1APQ9BWU0 796 aaKnown RBP8.38□□□□□ -1.07
SMAD3-209ENST00000558894 PTCH1Q13635 1447 aa8.37□□□□□ -1.07
SMAD3-209ENST00000558894 ROBO2Q9HCK4 1378 aa8.37□□□□□ -1.07
SMAD3-209ENST00000558894 RPGRIP1LQ68CZ1 1315 aa8.37□□□□□ -1.07
SMAD3-209ENST00000558894 BRINP3Q76B58 766 aa8.37□□□□□ -1.07
SMAD3-209ENST00000558894 CADPS2Q86UW7 1296 aa8.37□□□□□ -1.07
SMAD3-209ENST00000558894 TRIM52Q96A61 297 aa8.37□□□□□ -1.07
SMAD3-209ENST00000558894 JCADQ9P266 1359 aa8.36□□□□□ -1.07
SMAD3-209ENST00000558894 POTEAQ6S8J7 498 aa8.36□□□□□ -1.07
SMAD3-209ENST00000558894 MPHOSPH9Q99550 1183 aa8.36□□□□□ -1.07
SMAD3-209ENST00000558894 RGPD8O14715 1765 aaPredicted RBP8.35□□□□□ -1.07
SMAD3-209ENST00000558894 ATF3P18847 181 aa8.35□□□□□ -1.07
SMAD3-209ENST00000558894 SETD5Q9C0A6 1442 aa8.35□□□□□ -1.07
SMAD3-209ENST00000558894 CDC42BPGQ6DT37 1551 aa8.35□□□□□ -1.07
SMAD3-209ENST00000558894 ADGRF5Q8IZF2 1346 aa8.34□□□□□ -1.07
SMAD3-209ENST00000558894 NRXN1Q9ULB1 1477 aa8.34□□□□□ -1.07
SMAD3-209ENST00000558894 VGFO15240 615 aaPredicted RBP8.34□□□□□ -1.07
SMAD3-209ENST00000558894 C14orf37Q86TY3 774 aa8.34□□□□□ -1.07
SMAD3-209ENST00000558894 CCDC144AA2RUR9 1427 aa8.34□□□□□ -1.07
SMAD3-209ENST00000558894 TECPR2O15040 1411 aa8.34□□□□□ -1.07
SMAD3-209ENST00000558894 PIK3C2GO75747 1445 aa8.34□□□□□ -1.07
SMAD3-209ENST00000558894 FMN2Q9NZ56 1722 aa8.34□□□□□ -1.07
SMAD3-209ENST00000558894 C1orf167Q5SNV9 1468 aa8.33□□□□□ -1.08
SMAD3-209ENST00000558894 COL22A1Q8NFW1 1626 aaPredicted RBP8.33□□□□□ -1.08
SMAD3-209ENST00000558894 SPATA31A6Q5VVP1 1343 aa8.32□□□□□ -1.08
SMAD3-209ENST00000558894 MARF1Q9Y4F3 1742 aaKnown RBP8.32□□□□□ -1.08
SMAD3-209ENST00000558894 DDX17Q92841 729 aaKnown RBP8.32□□□□□ -1.08
SMAD3-209ENST00000558894 RAB3GAP2Q9H2M9 1393 aa8.32□□□□□ -1.08
SMAD3-209ENST00000558894 ANKRD30BQ9BXX2 1392 aa8.31□□□□□ -1.08
SMAD3-209ENST00000558894 MYOM2P54296 1465 aa8.31□□□□□ -1.08
SMAD3-209ENST00000558894 IFFO2Q5TF58 517 aa8.3□□□□□ -1.08
SMAD3-209ENST00000558894 ORAI2Q96SN7 254 aa8.3□□□□□ -1.08
SMAD3-209ENST00000558894 LRPPRCP42704 1394 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms