RNA–Protein interactions for RNA: ENST00000557866.1

SPG11-204, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 468 nt, Biotype non stop decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-204ENST00000557866 TTC37Q6PGP7 1564 aa10.82□□□□□ -0.68
SPG11-204ENST00000557866 CDC42BPAQ5VT25 1732 aa10.82□□□□□ -0.68
SPG11-204ENST00000557866 EMP3P54852 163 aa10.82□□□□□ -0.68
SPG11-204ENST00000557866 RYDENQ9NUL5 291 aaKnown RBP10.82□□□□□ -0.68
SPG11-204ENST00000557866 HOXB1P14653 301 aaPredicted RBP10.81□□□□□ -0.68
SPG11-204ENST00000557866 PLCH2O75038 1416 aa10.81□□□□□ -0.68
SPG11-204ENST00000557866 NCOA1Q15788 1441 aa10.81□□□□□ -0.68
SPG11-204ENST00000557866 ADGRL2O95490 1459 aa10.81□□□□□ -0.68
SPG11-204ENST00000557866 WDR7Q9Y4E6 1490 aa10.81□□□□□ -0.68
SPG11-204ENST00000557866 KDM6BO15054 1643 aa10.8□□□□□ -0.68
SPG11-204ENST00000557866 ZSWIM6Q9HCJ5 1215 aa10.8□□□□□ -0.68
SPG11-204ENST00000557866 ASXL2Q76L83 1435 aa10.8□□□□□ -0.68
SPG11-204ENST00000557866 SAMD9LQ8IVG5 1584 aa10.79□□□□□ -0.68
SPG11-204ENST00000557866 PREX2Q70Z35 1606 aa10.79□□□□□ -0.68
SPG11-204ENST00000557866 C9orf84Q5VXU9 1444 aa10.78□□□□□ -0.68
SPG11-204ENST00000557866 KIF3CO14782 793 aa10.78□□□□□ -0.68
SPG11-204ENST00000557866 SIN3AQ96ST3 1273 aa10.78□□□□□ -0.68
SPG11-204ENST00000557866 ARHGAP5Q13017 1502 aa10.78□□□□□ -0.68
SPG11-204ENST00000557866 KIAA1107Q9UPP5 1409 aa10.77□□□□□ -0.68
SPG11-204ENST00000557866 GCC2Q8IWJ2 1684 aa10.77□□□□□ -0.69
SPG11-204ENST00000557866 DENND4BO75064 1496 aaPredicted RBP10.77□□□□□ -0.69
SPG11-204ENST00000557866 SHANK2Q9UPX8 1470 aa10.77□□□□□ -0.69
SPG11-204ENST00000557866 C2orf72A6NCS6 295 aa10.77□□□□□ -0.69
SPG11-204ENST00000557866 NKX1-1Q15270 411 aaPredicted RBP10.77□□□□□ -0.69
SPG11-204ENST00000557866 EFCAB2Q5VUJ9 269 aa10.77□□□□□ -0.69
SPG11-204ENST00000557866 TMC2Q8TDI7 906 aa10.77□□□□□ -0.69
SPG11-204ENST00000557866 CDC42BPBQ9Y5S2 1711 aa10.77□□□□□ -0.69
SPG11-204ENST00000557866 ARHGEF12Q9NZN5 1544 aa10.77□□□□□ -0.69
SPG11-204ENST00000557866 ARHGEF5Q12774 1597 aa10.77□□□□□ -0.69
SPG11-204ENST00000557866 ANKRD30AQ9BXX3 1397 aa10.77□□□□□ -0.69
SPG11-204ENST00000557866 TSPY4P0CV99 314 aa10.76□□□□□ -0.69
SPG11-204ENST00000557866 TSPY10P0CW01 314 aa10.76□□□□□ -0.69
SPG11-204ENST00000557866 RSPH4AQ5TD94 716 aa10.76□□□□□ -0.69
SPG11-204ENST00000557866 CCDC141Q6ZP82 1450 aa10.75□□□□□ -0.69
SPG11-204ENST00000557866 FAM205CA6NFA0 338 aa10.75□□□□□ -0.69
SPG11-204ENST00000557866 CYB5RLQ6IPT4 315 aa10.75□□□□□ -0.69
SPG11-204ENST00000557866 TRIM52Q96A61 297 aa10.75□□□□□ -0.69
SPG11-204ENST00000557866 PLEKHH2Q8IVE3 1493 aa10.74□□□□□ -0.69
SPG11-204ENST00000557866 SYCP2Q9BX26 1530 aa10.74□□□□□ -0.69
SPG11-204ENST00000557866 MMRN1Q13201 1228 aa10.74□□□□□ -0.69
SPG11-204ENST00000557866 HS3ST6Q96QI5 342 aa10.74□□□□□ -0.69
SPG11-204ENST00000557866 MPHOSPH9Q99550 1183 aa10.74□□□□□ -0.69
SPG11-204ENST00000557866 CROCC2H7BZ55 1655 aa10.73□□□□□ -0.69
SPG11-204ENST00000557866 NEUROD1Q13562 356 aa10.73□□□□□ -0.69
SPG11-204ENST00000557866 GPR153Q6NV75 609 aa10.73□□□□□ -0.69
SPG11-204ENST00000557866 SPNS2Q8IVW8 549 aa10.73□□□□□ -0.69
SPG11-204ENST00000557866 TRAPPC8Q9Y2L5 1435 aa10.73□□□□□ -0.69
SPG11-204ENST00000557866 ARAP3Q8WWN8 1544 aa10.73□□□□□ -0.69
SPG11-204ENST00000557866 KIF15Q9NS87 1388 aa10.72□□□□□ -0.69
SPG11-204ENST00000557866 ANKRD50Q9ULJ7 1429 aa10.72□□□□□ -0.69
SPG11-204ENST00000557866 ABCC1P33527 1531 aa10.71□□□□□ -0.69
SPG11-204ENST00000557866 MYO5CQ9NQX4 1742 aa10.71□□□□□ -0.69
SPG11-204ENST00000557866 ACIN1Q9UKV3 1341 aaKnown RBP10.71□□□□□ -0.69
SPG11-204ENST00000557866 RIMBP3CA6NJZ7 1639 aa10.7□□□□□ -0.7
SPG11-204ENST00000557866 RIMBP3BA6NNM3 1639 aa10.7□□□□□ -0.7
SPG11-204ENST00000557866 ABCA9Q8IUA7 1624 aa10.7□□□□□ -0.7
SPG11-204ENST00000557866 RIMBP3Q9UFD9 1639 aa10.7□□□□□ -0.7
SPG11-204ENST00000557866 PZPP20742 1482 aa10.7□□□□□ -0.7
SPG11-204ENST00000557866 ERBB3P21860 1342 aa10.7□□□□□ -0.7
SPG11-204ENST00000557866 AMER1Q5JTC6 1135 aaPredicted RBP10.7□□□□□ -0.7
SPG11-204ENST00000557866 ADGBQ8N7X0 1667 aa10.69□□□□□ -0.7
SPG11-204ENST00000557866 POTEB3A0JP26 581 aa10.69□□□□□ -0.7
SPG11-204ENST00000557866 POTEBQ6S5H4 581 aa10.69□□□□□ -0.7
SPG11-204ENST00000557866 AFAP1Q8N556 730 aa10.69□□□□□ -0.7
SPG11-204ENST00000557866 MAST1Q9Y2H9 1570 aa10.69□□□□□ -0.7
SPG11-204ENST00000557866 FANCAO15360 1455 aa10.68□□□□□ -0.7
SPG11-204ENST00000557866 ZNF316A6NFI3 1004 aaPredicted RBP10.68□□□□□ -0.7
SPG11-204ENST00000557866 TIMELESSQ9UNS1 1208 aa10.68□□□□□ -0.7
SPG11-204ENST00000557866 CD109Q6YHK3 1445 aa10.67□□□□□ -0.7
SPG11-204ENST00000557866 ANKRD30BQ9BXX2 1392 aa10.67□□□□□ -0.7
SPG11-204ENST00000557866 SLC34A2O95436 690 aa10.67□□□□□ -0.7
SPG11-204ENST00000557866 ARSIQ5FYB1 569 aa10.67□□□□□ -0.7
SPG11-204ENST00000557866 GPHNQ9NQX3 736 aaPredicted RBP10.67□□□□□ -0.7
SPG11-204ENST00000557866 GTPBP6O43824 516 aaPredicted RBP10.66□□□□□ -0.7
SPG11-204ENST00000557866 PPP1R15AO75807 674 aaPredicted RBP10.66□□□□□ -0.7
SPG11-204ENST00000557866 SCAPERQ9BY12 1400 aa10.66□□□□□ -0.7
SPG11-204ENST00000557866 NUP155O75694 1391 aa10.65□□□□□ -0.7
SPG11-204ENST00000557866 SPAG9O60271 1321 aaKnown RBP10.65□□□□□ -0.7
SPG11-204ENST00000557866 ADGRL1O94910 1474 aa10.64□□□□□ -0.71
SPG11-204ENST00000557866 FOXK1P85037 733 aa10.64□□□□□ -0.71
SPG11-204ENST00000557866 RTEL1-TNFRSF6BF6WH68 1400 aa10.64□□□□□ -0.71
SPG11-204ENST00000557866 KDM5DQ9BY66 1539 aa10.63□□□□□ -0.71
SPG11-204ENST00000557866 PLXNC1O60486 1568 aa10.63□□□□□ -0.71
SPG11-204ENST00000557866 VARS2Q5ST30 1063 aaKnown RBP10.62□□□□□ -0.71
SPG11-204ENST00000557866 TONSLQ96HA7 1378 aa10.62□□□□□ -0.71
SPG11-204ENST00000557866 PLPP6Q8IY26 295 aa10.61□□□□□ -0.71
SPG11-204ENST00000557866 PCDHGA4Q9Y5G9 962 aa10.61□□□□□ -0.71
SPG11-204ENST00000557866 ZFYVE16Q7Z3T8 1539 aa10.61□□□□□ -0.71
SPG11-204ENST00000557866 DUOX2Q9NRD8 1548 aa10.61□□□□□ -0.71
SPG11-204ENST00000557866 ERBINQ96RT1 1412 aa10.6□□□□□ -0.71
SPG11-204ENST00000557866 KHSRPQ92945 711 aaKnown RBP eCLIP10.6□□□□□ -0.717e-7■■■■□ 20.8
SPG11-204ENST00000557866 L3MBTL2Q969R5 705 aa10.59□□□□□ -0.71
SPG11-204ENST00000557866 RPRD2Q5VT52 1461 aaKnown RBP10.59□□□□□ -0.71
SPG11-204ENST00000557866 POGZQ7Z3K3 1410 aa10.58□□□□□ -0.72
SPG11-204ENST00000557866 GLI2P10070 1586 aa10.58□□□□□ -0.72
SPG11-204ENST00000557866 NEO1Q92859 1461 aa10.58□□□□□ -0.72
SPG11-204ENST00000557866 PDE4AP27815 886 aa10.58□□□□□ -0.72
SPG11-204ENST00000557866 FAM69CQ0P6D2 419 aa10.58□□□□□ -0.72
SPG11-204ENST00000557866 DSG2Q14126 1118 aa10.58□□□□□ -0.72
SPG11-204ENST00000557866 ZNF687Q8N1G0 1237 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms