RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 E9PCH4 1651 aa22.3■■□□□ 1.16
SHMT2-235ENST00000557740 CHGAP10645 457 aaKnown RBP22.29■■□□□ 1.16
SHMT2-235ENST00000557740 KCNA6P17658 529 aa22.29■■□□□ 1.16
SHMT2-235ENST00000557740 HDGFP51858 240 aaKnown RBP22.29■■□□□ 1.16
SHMT2-235ENST00000557740 TMEM94Q12767 1356 aa22.28■■□□□ 1.16
SHMT2-235ENST00000557740 TMEM131LA2VDJ0 1609 aa22.28■■□□□ 1.16
SHMT2-235ENST00000557740 PLEKHG1Q9ULL1 1385 aa22.27■■□□□ 1.16
SHMT2-235ENST00000557740 SENP3Q9H4L4 574 aaPredicted RBP22.27■■□□□ 1.16
SHMT2-235ENST00000557740 NKTRP30414 1462 aaKnown RBP22.26■■□□□ 1.15
SHMT2-235ENST00000557740 RRBP1Q9P2E9 1410 aaKnown RBP22.25■■□□□ 1.15
SHMT2-235ENST00000557740 PROSER2Q86WR7 435 aaPredicted RBP22.25■■□□□ 1.15
SHMT2-235ENST00000557740 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.25■■□□□ 1.15
SHMT2-235ENST00000557740 MED1Q15648 1581 aaPredicted RBP22.25■■□□□ 1.15
SHMT2-235ENST00000557740 NWD1Q149M9 1564 aa22.24■■□□□ 1.15
SHMT2-235ENST00000557740 MYO5BQ9ULV0 1848 aa22.23■■□□□ 1.15
SHMT2-235ENST00000557740 SOCS7O14512 581 aa22.22■■□□□ 1.15
SHMT2-235ENST00000557740 XIRP1Q702N8 1843 aaKnown RBP22.22■■□□□ 1.15
SHMT2-235ENST00000557740 NUTM2DQ5VT03 806 aaPredicted RBP22.18■■□□□ 1.14
SHMT2-235ENST00000557740 RBM33Q96EV2 1170 aaKnown RBP22.18■■□□□ 1.14
SHMT2-235ENST00000557740 MSH6P52701 1360 aa22.16■■□□□ 1.14
SHMT2-235ENST00000557740 TBX22Q9Y458 520 aa22.16■■□□□ 1.14
SHMT2-235ENST00000557740 FAM135BQ49AJ0 1406 aa22.15■■□□□ 1.14
SHMT2-235ENST00000557740 PHF23Q9BUL5 403 aaPredicted RBP22.15■■□□□ 1.14
SHMT2-235ENST00000557740 DIP2AQ14689 1571 aa22.15■■□□□ 1.14
SHMT2-235ENST00000557740 NAIPQ13075 1403 aa22.14■■□□□ 1.14
SHMT2-235ENST00000557740 ADAMTS13Q76LX8 1427 aa22.14■■□□□ 1.13
SHMT2-235ENST00000557740 SPHKAPQ2M3C7 1700 aa22.12■■□□□ 1.13
SHMT2-235ENST00000557740 CHD2O14647 1828 aaKnown RBP22.1■■□□□ 1.13
SHMT2-235ENST00000557740 ZNF326Q5BKZ1 582 aaKnown RBP22.1■■□□□ 1.13
SHMT2-235ENST00000557740 PIK3R4Q99570 1358 aa22.1■■□□□ 1.13
SHMT2-235ENST00000557740 HFM1A2PYH4 1435 aa22.09■■□□□ 1.13
SHMT2-235ENST00000557740 C14orf37Q86TY3 774 aa22.09■■□□□ 1.13
SHMT2-235ENST00000557740 TRPM2O94759 1503 aa22.09■■□□□ 1.13
SHMT2-235ENST00000557740 ROBO1Q9Y6N7 1651 aa22.07■■□□□ 1.12
SHMT2-235ENST00000557740 TRIM52Q96A61 297 aa22.07■■□□□ 1.12
SHMT2-235ENST00000557740 NCOA3Q9Y6Q9 1424 aa22.06■■□□□ 1.12
SHMT2-235ENST00000557740 SLAIN2Q9P270 581 aa22.05■■□□□ 1.12
SHMT2-235ENST00000557740 CLTCL1P53675 1640 aa22.03■■□□□ 1.12
SHMT2-235ENST00000557740 SETBP1Q9Y6X0 1596 aa22.03■■□□□ 1.12
SHMT2-235ENST00000557740 AMOTL2Q9Y2J4 779 aa22.02■■□□□ 1.12
SHMT2-235ENST00000557740 PTPRUQ92729 1446 aa22■■□□□ 1.11
SHMT2-235ENST00000557740 NRXN3Q9Y4C0 1643 aa21.99■■□□□ 1.11
SHMT2-235ENST00000557740 CADPS2Q86UW7 1296 aa21.99■■□□□ 1.11
SHMT2-235ENST00000557740 SLC4A1APQ9BWU0 796 aaKnown RBP21.99■■□□□ 1.11
SHMT2-235ENST00000557740 C19orf44Q9H6X5 657 aa21.99■■□□□ 1.11
SHMT2-235ENST00000557740 NEXMIFQ5QGS0 1516 aa21.98■■□□□ 1.11
SHMT2-235ENST00000557740 ATF3P18847 181 aa21.98■■□□□ 1.11
SHMT2-235ENST00000557740 XRN1Q8IZH2 1706 aaKnown RBP21.95■■□□□ 1.1
SHMT2-235ENST00000557740 METP08581 1390 aa21.95■■□□□ 1.1
SHMT2-235ENST00000557740 PHLPP1O60346 1717 aa21.94■■□□□ 1.1
SHMT2-235ENST00000557740 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.94■■□□□ 1.1
SHMT2-235ENST00000557740 KIF1BO60333 1816 aa21.94■■□□□ 1.1
SHMT2-235ENST00000557740 DCCP43146 1447 aa21.93■■□□□ 1.1
SHMT2-235ENST00000557740 JCADQ9P266 1359 aa21.92■■□□□ 1.1
SHMT2-235ENST00000557740 VGFO15240 615 aaPredicted RBP21.9■■□□□ 1.1
SHMT2-235ENST00000557740 COL16A1Q07092 1604 aaPredicted RBP21.88■■□□□ 1.09
SHMT2-235ENST00000557740 RPGRIP1LQ68CZ1 1315 aa21.88■■□□□ 1.09
SHMT2-235ENST00000557740 RGS17Q9UGC6 210 aaPredicted RBP21.88■■□□□ 1.09
SHMT2-235ENST00000557740 AHDC1Q5TGY3 1603 aaPredicted RBP21.87■■□□□ 1.09
SHMT2-235ENST00000557740 FOXD1Q16676 465 aa21.86■■□□□ 1.09
SHMT2-235ENST00000557740 ADGRL3Q9HAR2 1447 aa21.86■■□□□ 1.09
SHMT2-235ENST00000557740 BRINP3Q76B58 766 aa21.85■■□□□ 1.09
SHMT2-235ENST00000557740 CCDC144AA2RUR9 1427 aa21.85■■□□□ 1.09
SHMT2-235ENST00000557740 MST1RQ04912 1400 aa21.83■■□□□ 1.09
SHMT2-235ENST00000557740 PTCH1Q13635 1447 aa21.83■■□□□ 1.09
SHMT2-235ENST00000557740 ASXL1Q8IXJ9 1541 aa21.82■■□□□ 1.08
SHMT2-235ENST00000557740 SPATA31A6Q5VVP1 1343 aa21.81■■□□□ 1.08
SHMT2-235ENST00000557740 MPHOSPH9Q99550 1183 aa21.8■■□□□ 1.08
SHMT2-235ENST00000557740 PPLO60437 1756 aa21.79■■□□□ 1.08
SHMT2-235ENST00000557740 ROBO2Q9HCK4 1378 aa21.78■■□□□ 1.08
SHMT2-235ENST00000557740 MEX3CQ5U5Q3 659 aaKnown RBP21.78■■□□□ 1.08
SHMT2-235ENST00000557740 POTEAQ6S8J7 498 aa21.78■■□□□ 1.08
SHMT2-235ENST00000557740 ACIN1Q9UKV3 1341 aaKnown RBP21.78■■□□□ 1.08
SHMT2-235ENST00000557740 SETD1AO15047 1707 aaKnown RBP21.77■■□□□ 1.08
SHMT2-235ENST00000557740 NALCNQ8IZF0 1738 aa21.77■■□□□ 1.08
SHMT2-235ENST00000557740 PRAG1Q86YV5 1406 aa21.77■■□□□ 1.08
SHMT2-235ENST00000557740 LRP6O75581 1613 aa21.76■■□□□ 1.07
SHMT2-235ENST00000557740 SHPRHQ149N8 1683 aa21.75■■□□□ 1.07
SHMT2-235ENST00000557740 SPATA31E1Q6ZUB1 1445 aa21.75■■□□□ 1.07
SHMT2-235ENST00000557740 SETD5Q9C0A6 1442 aa21.75■■□□□ 1.07
SHMT2-235ENST00000557740 RGL3Q3MIN7 710 aa21.75■■□□□ 1.07
SHMT2-235ENST00000557740 ANKRD30BQ9BXX2 1392 aa21.74■■□□□ 1.07
SHMT2-235ENST00000557740 ADGRF5Q8IZF2 1346 aa21.73■■□□□ 1.07
SHMT2-235ENST00000557740 C1orf167Q5SNV9 1468 aa21.72■■□□□ 1.07
SHMT2-235ENST00000557740 NHSL1Q5SYE7 1610 aa21.71■■□□□ 1.07
SHMT2-235ENST00000557740 NUTM2BA6NNL0 878 aaPredicted RBP21.7■■□□□ 1.06
SHMT2-235ENST00000557740 NUTM2EB1AL46 878 aaPredicted RBP21.7■■□□□ 1.06
SHMT2-235ENST00000557740 NUTM2AQ8IVF1 878 aaPredicted RBP21.7■■□□□ 1.06
SHMT2-235ENST00000557740 LRRC59Q96AG4 307 aaKnown RBP21.69■■□□□ 1.06
SHMT2-235ENST00000557740 DDX17Q92841 729 aaKnown RBP21.68■■□□□ 1.06
SHMT2-235ENST00000557740 ZNF772Q68DY9 489 aaPredicted RBP21.67■■□□□ 1.06
SHMT2-235ENST00000557740 PIK3C2GO75747 1445 aa21.66■■□□□ 1.06
SHMT2-235ENST00000557740 RAB3GAP2Q9H2M9 1393 aa21.66■■□□□ 1.06
SHMT2-235ENST00000557740 STK26Q9P289 416 aa21.65■■□□□ 1.06
SHMT2-235ENST00000557740 IFT172Q9UG01 1749 aa21.65■■□□□ 1.06
SHMT2-235ENST00000557740 TECPR2O15040 1411 aa21.64■■□□□ 1.06
SHMT2-235ENST00000557740 LRPPRCP42704 1394 aaKnown RBP21.64■■□□□ 1.06
SHMT2-235ENST00000557740 PNPLA6Q8IY17 1366 aa21.64■■□□□ 1.06
SHMT2-235ENST00000557740 CDC42BPGQ6DT37 1551 aa21.64■■□□□ 1.05
SHMT2-235ENST00000557740 ORAI2Q96SN7 254 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms