RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NEURL4Q96JN8 1562 aa18.64■□□□□ 0.58
SHMT2-227ENST00000557269 NEXMIFQ5QGS0 1516 aa18.64■□□□□ 0.57
SHMT2-227ENST00000557269 TXNDC2Q86VQ3 553 aa18.63■□□□□ 0.57
SHMT2-227ENST00000557269 CLSPNQ9HAW4 1339 aa18.63■□□□□ 0.57
SHMT2-227ENST00000557269 SENP3Q9H4L4 574 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-227ENST00000557269 STRCQ7RTU9 1775 aa18.61■□□□□ 0.57
SHMT2-227ENST00000557269 ANKLE2Q86XL3 938 aa18.61■□□□□ 0.57
SHMT2-227ENST00000557269 SCAF11Q99590 1463 aaKnown RBP18.6■□□□□ 0.57
SHMT2-227ENST00000557269 RPGRIP1LQ68CZ1 1315 aa18.6■□□□□ 0.57
SHMT2-227ENST00000557269 L3MBTL2Q969R5 705 aa18.6■□□□□ 0.57
SHMT2-227ENST00000557269 EID1Q9Y6B2 187 aa18.59■□□□□ 0.57
SHMT2-227ENST00000557269 PPLO60437 1756 aa18.59■□□□□ 0.57
SHMT2-227ENST00000557269 IFT172Q9UG01 1749 aa18.58■□□□□ 0.57
SHMT2-227ENST00000557269 DCAF11Q8TEB1 546 aa18.58■□□□□ 0.56
SHMT2-227ENST00000557269 ADGRF5Q8IZF2 1346 aa18.57■□□□□ 0.56
SHMT2-227ENST00000557269 PPP1R15AO75807 674 aaPredicted RBP18.57■□□□□ 0.56
SHMT2-227ENST00000557269 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.57■□□□□ 0.56
SHMT2-227ENST00000557269 KDM2AQ9Y2K7 1162 aa18.57■□□□□ 0.56
SHMT2-227ENST00000557269 HDGFP51858 240 aaKnown RBP18.56■□□□□ 0.56
SHMT2-227ENST00000557269 POLR1AO95602 1720 aaPredicted RBP18.56■□□□□ 0.56
SHMT2-227ENST00000557269 MED14O60244 1454 aa18.55■□□□□ 0.56
SHMT2-227ENST00000557269 VGFO15240 615 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-227ENST00000557269 NPHP4O75161 1426 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-227ENST00000557269 PLEKHG1Q9ULL1 1385 aa18.54■□□□□ 0.56
SHMT2-227ENST00000557269 TONSLQ96HA7 1378 aa18.53■□□□□ 0.56
SHMT2-227ENST00000557269 MYOM2P54296 1465 aa18.52■□□□□ 0.56
SHMT2-227ENST00000557269 BCANQ96GW7 911 aa18.51■□□□□ 0.55
SHMT2-227ENST00000557269 SLC26A8Q96RN1 970 aa18.51■□□□□ 0.55
SHMT2-227ENST00000557269 NRXN1Q9ULB1 1477 aa18.51■□□□□ 0.55
SHMT2-227ENST00000557269 IQGAP1P46940 1657 aa18.5■□□□□ 0.55
SHMT2-227ENST00000557269 ADAMTS13Q76LX8 1427 aa18.5■□□□□ 0.55
SHMT2-227ENST00000557269 NRXN3Q9Y4C0 1643 aa18.5■□□□□ 0.55
SHMT2-227ENST00000557269 PIK3C2GO75747 1445 aa18.49■□□□□ 0.55
SHMT2-227ENST00000557269 SETBP1Q9Y6X0 1596 aa18.48■□□□□ 0.55
SHMT2-227ENST00000557269 NBPF8Q3BBV2 869 aa18.46■□□□□ 0.55
SHMT2-227ENST00000557269 STAC3Q96MF2 364 aa18.46■□□□□ 0.55
SHMT2-227ENST00000557269 PRAG1Q86YV5 1406 aa18.46■□□□□ 0.55
SHMT2-227ENST00000557269 CFAP70Q5T0N1 1121 aa18.45■□□□□ 0.54
SHMT2-227ENST00000557269 TIMELESSQ9UNS1 1208 aa18.45■□□□□ 0.54
SHMT2-227ENST00000557269 DMRT2Q9Y5R5 561 aa18.45■□□□□ 0.54
SHMT2-227ENST00000557269 ALKQ9UM73 1620 aa18.45■□□□□ 0.54
SHMT2-227ENST00000557269 C14orf93Q9H972 538 aaKnown RBP18.44■□□□□ 0.54
SHMT2-227ENST00000557269 TBX22Q9Y458 520 aa18.44■□□□□ 0.54
SHMT2-227ENST00000557269 METP08581 1390 aa18.43■□□□□ 0.54
SHMT2-227ENST00000557269 SETD1AO15047 1707 aaKnown RBP18.43■□□□□ 0.54
SHMT2-227ENST00000557269 TMEM132EQ6IEE7 984 aa18.41■□□□□ 0.54
SHMT2-227ENST00000557269 ASXL1Q8IXJ9 1541 aa18.4■□□□□ 0.54
SHMT2-227ENST00000557269 NBPF1Q3BBV0 1214 aa18.4■□□□□ 0.54
SHMT2-227ENST00000557269 PTPRUQ92729 1446 aa18.4■□□□□ 0.54
SHMT2-227ENST00000557269 DIP2AQ14689 1571 aa18.39■□□□□ 0.53
SHMT2-227ENST00000557269 ZNF335Q9H4Z2 1342 aaPredicted RBP18.39■□□□□ 0.53
SHMT2-227ENST00000557269 STRCP1A6NGW2 1772 aa18.36■□□□□ 0.53
SHMT2-227ENST00000557269 ADGRB1O14514 1584 aa18.36■□□□□ 0.53
SHMT2-227ENST00000557269 LAMC1P11047 1609 aa18.35■□□□□ 0.53
SHMT2-227ENST00000557269 TRPM1Q7Z4N2 1603 aa18.35■□□□□ 0.53
SHMT2-227ENST00000557269 KCNA6P17658 529 aa18.34■□□□□ 0.53
SHMT2-227ENST00000557269 AMOTL2Q9Y2J4 779 aa18.34■□□□□ 0.53
SHMT2-227ENST00000557269 KIAA1210Q9ULL0 1709 aa18.34■□□□□ 0.53
SHMT2-227ENST00000557269 PIK3R4Q99570 1358 aa18.33■□□□□ 0.53
SHMT2-227ENST00000557269 CHD2O14647 1828 aaKnown RBP18.33■□□□□ 0.53
SHMT2-227ENST00000557269 STK26Q9P289 416 aa18.33■□□□□ 0.52
SHMT2-227ENST00000557269 YTHDC2Q9H6S0 1430 aaKnown RBP18.32■□□□□ 0.52
SHMT2-227ENST00000557269 NWD1Q149M9 1564 aa18.31■□□□□ 0.52
SHMT2-227ENST00000557269 RALGAPBQ86X10 1494 aa18.31■□□□□ 0.52
SHMT2-227ENST00000557269 LTBP4Q8N2S1 1624 aa18.31■□□□□ 0.52
SHMT2-227ENST00000557269 LRPPRCP42704 1394 aaKnown RBP18.3■□□□□ 0.52
SHMT2-227ENST00000557269 XRN1Q8IZH2 1706 aaKnown RBP18.3■□□□□ 0.52
SHMT2-227ENST00000557269 ROCK2O75116 1388 aaKnown RBP18.3■□□□□ 0.52
SHMT2-227ENST00000557269 RBM33Q96EV2 1170 aaKnown RBP18.29■□□□□ 0.52
SHMT2-227ENST00000557269 ABCC11Q96J66 1382 aa18.29■□□□□ 0.52
SHMT2-227ENST00000557269 ROBO2Q9HCK4 1378 aa18.29■□□□□ 0.52
SHMT2-227ENST00000557269 TRAK1Q9UPV9 953 aa18.28■□□□□ 0.52
SHMT2-227ENST00000557269 GPRASP1Q5JY77 1395 aa18.28■□□□□ 0.52
SHMT2-227ENST00000557269 TECPR2O15040 1411 aa18.26■□□□□ 0.51
SHMT2-227ENST00000557269 WAPLQ7Z5K2 1190 aa18.25■□□□□ 0.51
SHMT2-227ENST00000557269 CARD11Q9BXL7 1154 aa18.25■□□□□ 0.51
SHMT2-227ENST00000557269 PLEKHH1Q9ULM0 1364 aa18.25■□□□□ 0.51
SHMT2-227ENST00000557269 LRRC7Q96NW7 1537 aa18.24■□□□□ 0.51
SHMT2-227ENST00000557269 PROSER2Q86WR7 435 aaPredicted RBP18.24■□□□□ 0.51
SHMT2-227ENST00000557269 NKTRP30414 1462 aaKnown RBP18.24■□□□□ 0.51
SHMT2-227ENST00000557269 CPS1P31327 1500 aa18.23■□□□□ 0.51
SHMT2-227ENST00000557269 KNDC1Q76NI1 1749 aa18.23■□□□□ 0.51
SHMT2-227ENST00000557269 PTCH1Q13635 1447 aa18.23■□□□□ 0.51
SHMT2-227ENST00000557269 TMEM94Q12767 1356 aa18.22■□□□□ 0.51
SHMT2-227ENST00000557269 PRAM1Q96QH2 718 aa18.22■□□□□ 0.51
SHMT2-227ENST00000557269 DLC1Q96QB1 1528 aa18.22■□□□□ 0.51
SHMT2-227ENST00000557269 SIRT1Q96EB6 747 aa18.21■□□□□ 0.51
SHMT2-227ENST00000557269 ARHGEF28Q8N1W1 1705 aaKnown RBP18.2■□□□□ 0.5
SHMT2-227ENST00000557269 SAFB2Q14151 953 aaKnown RBP eCLIP18.2■□□□□ 0.5
SHMT2-227ENST00000557269 XIRP1Q702N8 1843 aaKnown RBP18.2■□□□□ 0.5
SHMT2-227ENST00000557269 FAM135BQ49AJ0 1406 aa18.2■□□□□ 0.5
SHMT2-227ENST00000557269 ZEB1P37275 1124 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-227ENST00000557269 POGKQ9P215 609 aa18.17■□□□□ 0.5
SHMT2-227ENST00000557269 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-227ENST00000557269 CERKQ8TCT0 537 aa18.15■□□□□ 0.5
SHMT2-227ENST00000557269 USP47Q96K76 1375 aa18.15■□□□□ 0.5
SHMT2-227ENST00000557269 CENPJQ9HC77 1338 aaPredicted RBP18.14■□□□□ 0.49
SHMT2-227ENST00000557269 NALCNQ8IZF0 1738 aa18.14■□□□□ 0.49
SHMT2-227ENST00000557269 ST20-MTHFSA0A0A6YYL1 179 aa18.13■□□□□ 0.49
SHMT2-227ENST00000557269 C14orf37Q86TY3 774 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms