RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 KCNA6P17658 529 aa28.36■■■□□ 2.13
VIPAS39-209ENST00000556909 TMEM131LA2VDJ0 1609 aa28.36■■■□□ 2.13
VIPAS39-209ENST00000556909 ZFYVE9O95405 1425 aa28.35■■■□□ 2.13
VIPAS39-209ENST00000556909 E9PCH4 1651 aa28.34■■■□□ 2.13
VIPAS39-209ENST00000556909 ROBO1Q9Y6N7 1651 aa28.33■■■□□ 2.13
VIPAS39-209ENST00000556909 FAM135BQ49AJ0 1406 aa28.32■■■□□ 2.12
VIPAS39-209ENST00000556909 CHD2O14647 1828 aaKnown RBP28.31■■■□□ 2.12
VIPAS39-209ENST00000556909 IQGAP3Q86VI3 1631 aa28.3■■■□□ 2.12
VIPAS39-209ENST00000556909 RIMS2Q9UQ26 1411 aa28.27■■■□□ 2.12
VIPAS39-209ENST00000556909 PLEKHG1Q9ULL1 1385 aa28.27■■■□□ 2.12
VIPAS39-209ENST00000556909 PROSER2Q86WR7 435 aaPredicted RBP28.27■■■□□ 2.12
VIPAS39-209ENST00000556909 ROCK1Q13464 1354 aa28.26■■■□□ 2.12
VIPAS39-209ENST00000556909 RBM33Q96EV2 1170 aaKnown RBP28.26■■■□□ 2.11
VIPAS39-209ENST00000556909 BCANQ96GW7 911 aa28.25■■■□□ 2.11
VIPAS39-209ENST00000556909 PPP1R15AO75807 674 aaPredicted RBP28.2■■■□□ 2.1
VIPAS39-209ENST00000556909 MSH6P52701 1360 aa28.2■■■□□ 2.1
VIPAS39-209ENST00000556909 DIP2AQ14689 1571 aa28.17■■■□□ 2.1
VIPAS39-209ENST00000556909 HDGFP51858 240 aaKnown RBP28.17■■■□□ 2.1
VIPAS39-209ENST00000556909 PHLPP1O60346 1717 aa28.16■■■□□ 2.1
VIPAS39-209ENST00000556909 RGS17Q9UGC6 210 aaPredicted RBP28.16■■■□□ 2.1
VIPAS39-209ENST00000556909 CHGAP10645 457 aaKnown RBP28.14■■■□□ 2.1
VIPAS39-209ENST00000556909 ADAMTS13Q76LX8 1427 aa28.14■■■□□ 2.1
VIPAS39-209ENST00000556909 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.13■■■□□ 2.09
VIPAS39-209ENST00000556909 TBX22Q9Y458 520 aa28.12■■■□□ 2.09
VIPAS39-209ENST00000556909 SPHKAPQ2M3C7 1700 aa28.12■■■□□ 2.09
VIPAS39-209ENST00000556909 NUP155O75694 1391 aa28.11■■■□□ 2.09
VIPAS39-209ENST00000556909 NUTM2DQ5VT03 806 aaPredicted RBP28.09■■■□□ 2.09
VIPAS39-209ENST00000556909 NCOA3Q9Y6Q9 1424 aa28.09■■■□□ 2.09
VIPAS39-209ENST00000556909 SLAIN2Q9P270 581 aa28.08■■■□□ 2.09
VIPAS39-209ENST00000556909 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.08■■■□□ 2.09
VIPAS39-209ENST00000556909 ITGAEP38570 1179 aa28.07■■■□□ 2.08
VIPAS39-209ENST00000556909 TRPM2O94759 1503 aa28.07■■■□□ 2.08
VIPAS39-209ENST00000556909 COL16A1Q07092 1604 aaPredicted RBP28.07■■■□□ 2.08
VIPAS39-209ENST00000556909 PIK3R4Q99570 1358 aa28.06■■■□□ 2.08
VIPAS39-209ENST00000556909 NRXN3Q9Y4C0 1643 aa28.05■■■□□ 2.08
VIPAS39-209ENST00000556909 JCADQ9P266 1359 aa28■■■□□ 2.07
VIPAS39-209ENST00000556909 SETBP1Q9Y6X0 1596 aa28■■■□□ 2.07
VIPAS39-209ENST00000556909 PPARGC1BQ86YN6 1023 aaKnown RBP28■■■□□ 2.07
VIPAS39-209ENST00000556909 XRN1Q8IZH2 1706 aaKnown RBP28■■■□□ 2.07
VIPAS39-209ENST00000556909 POTEAQ6S8J7 498 aa27.99■■■□□ 2.07
VIPAS39-209ENST00000556909 C14orf37Q86TY3 774 aa27.99■■■□□ 2.07
VIPAS39-209ENST00000556909 PTPRUQ92729 1446 aa27.99■■■□□ 2.07
VIPAS39-209ENST00000556909 AHDC1Q5TGY3 1603 aaPredicted RBP27.98■■■□□ 2.07
VIPAS39-209ENST00000556909 CLTCL1P53675 1640 aa27.96■■■□□ 2.07
VIPAS39-209ENST00000556909 CADPS2Q86UW7 1296 aa27.94■■■□□ 2.06
VIPAS39-209ENST00000556909 C19orf44Q9H6X5 657 aa27.94■■■□□ 2.06
VIPAS39-209ENST00000556909 SHPRHQ149N8 1683 aa27.94■■■□□ 2.06
VIPAS39-209ENST00000556909 AMOTL2Q9Y2J4 779 aa27.93■■■□□ 2.06
VIPAS39-209ENST00000556909 ATF3P18847 181 aa27.91■■■□□ 2.06
VIPAS39-209ENST00000556909 SETD1AO15047 1707 aaKnown RBP27.91■■■□□ 2.06
VIPAS39-209ENST00000556909 LRP6O75581 1613 aa27.91■■■□□ 2.06
VIPAS39-209ENST00000556909 KIF1BO60333 1816 aa27.9■■■□□ 2.06
VIPAS39-209ENST00000556909 NEXMIFQ5QGS0 1516 aa27.9■■■□□ 2.06
VIPAS39-209ENST00000556909 RRBP1Q9P2E9 1410 aaKnown RBP27.9■■■□□ 2.06
VIPAS39-209ENST00000556909 DCCP43146 1447 aa27.89■■■□□ 2.06
VIPAS39-209ENST00000556909 NAIPQ13075 1403 aa27.86■■■□□ 2.05
VIPAS39-209ENST00000556909 ZNF326Q5BKZ1 582 aaKnown RBP27.86■■■□□ 2.05
VIPAS39-209ENST00000556909 SPATA31A6Q5VVP1 1343 aa27.85■■■□□ 2.05
VIPAS39-209ENST00000556909 METP08581 1390 aa27.85■■■□□ 2.05
VIPAS39-209ENST00000556909 ASXL1Q8IXJ9 1541 aa27.84■■■□□ 2.05
VIPAS39-209ENST00000556909 NHSL1Q5SYE7 1610 aa27.84■■■□□ 2.05
VIPAS39-209ENST00000556909 NALCNQ8IZF0 1738 aa27.84■■■□□ 2.05
VIPAS39-209ENST00000556909 BRINP3Q76B58 766 aa27.82■■■□□ 2.04
VIPAS39-209ENST00000556909 MST1RQ04912 1400 aa27.81■■■□□ 2.04
VIPAS39-209ENST00000556909 ADGRL3Q9HAR2 1447 aa27.77■■■□□ 2.04
VIPAS39-209ENST00000556909 MEX3CQ5U5Q3 659 aaKnown RBP27.76■■■□□ 2.03
VIPAS39-209ENST00000556909 HFM1A2PYH4 1435 aa27.74■■■□□ 2.03
VIPAS39-209ENST00000556909 SETD5Q9C0A6 1442 aa27.73■■■□□ 2.03
VIPAS39-209ENST00000556909 PPLO60437 1756 aa27.71■■■□□ 2.03
VIPAS39-209ENST00000556909 ZNF772Q68DY9 489 aaPredicted RBP27.7■■■□□ 2.02
VIPAS39-209ENST00000556909 PTCH1Q13635 1447 aa27.69■■■□□ 2.02
VIPAS39-209ENST00000556909 TRIM52Q96A61 297 aa27.65■■■□□ 2.02
VIPAS39-209ENST00000556909 LAMC1P11047 1609 aa27.65■■■□□ 2.02
VIPAS39-209ENST00000556909 PRAG1Q86YV5 1406 aa27.65■■■□□ 2.02
VIPAS39-209ENST00000556909 NUTM2BA6NNL0 878 aaPredicted RBP27.64■■■□□ 2.02
VIPAS39-209ENST00000556909 NUTM2EB1AL46 878 aaPredicted RBP27.64■■■□□ 2.02
VIPAS39-209ENST00000556909 NUTM2AQ8IVF1 878 aaPredicted RBP27.64■■■□□ 2.02
VIPAS39-209ENST00000556909 C1orf167Q5SNV9 1468 aa27.63■■■□□ 2.01
VIPAS39-209ENST00000556909 VGFO15240 615 aaPredicted RBP27.62■■■□□ 2.01
VIPAS39-209ENST00000556909 ROBO2Q9HCK4 1378 aa27.61■■■□□ 2.01
VIPAS39-209ENST00000556909 DDX17Q92841 729 aaKnown RBP27.61■■■□□ 2.01
VIPAS39-209ENST00000556909 LRRC59Q96AG4 307 aaKnown RBP27.6■■■□□ 2.01
VIPAS39-209ENST00000556909 SLC4A1APQ9BWU0 796 aaKnown RBP27.6■■■□□ 2.01
VIPAS39-209ENST00000556909 RPGRIP1LQ68CZ1 1315 aa27.6■■■□□ 2.01
VIPAS39-209ENST00000556909 PNPLA6Q8IY17 1366 aa27.6■■■□□ 2.01
VIPAS39-209ENST00000556909 AFF2P51816 1311 aa27.58■■■□□ 2.01
VIPAS39-209ENST00000556909 CDK12Q9NYV4 1490 aaPredicted RBP27.57■■■□□ 2
VIPAS39-209ENST00000556909 IFT172Q9UG01 1749 aa27.55■■■□□ 2
VIPAS39-209ENST00000556909 RXRBP28702 533 aa27.55■■■□□ 2
VIPAS39-209ENST00000556909 CDC42BPGQ6DT37 1551 aa27.52■■■□□ 2
VIPAS39-209ENST00000556909 FOXD1Q16676 465 aa27.5■■□□□ 1.99
VIPAS39-209ENST00000556909 UPF1Q92900 1129 aaKnown RBP eCLIP27.5■■□□□ 1.99
VIPAS39-209ENST00000556909 C8orf37Q96NL8 207 aa27.49■■□□□ 1.99
VIPAS39-209ENST00000556909 ORAI2Q96SN7 254 aa27.48■■□□□ 1.99
VIPAS39-209ENST00000556909 CCDC144AA2RUR9 1427 aa27.48■■□□□ 1.99
VIPAS39-209ENST00000556909 SOS2Q07890 1332 aaPredicted RBP27.47■■□□□ 1.99
VIPAS39-209ENST00000556909 COL22A1Q8NFW1 1626 aaPredicted RBP27.47■■□□□ 1.99
VIPAS39-209ENST00000556909 SPATA31E1Q6ZUB1 1445 aa27.46■■□□□ 1.99
VIPAS39-209ENST00000556909 KNDC1Q76NI1 1749 aa27.46■■□□□ 1.99
VIPAS39-209ENST00000556909 RGS12O14924 1447 aa27.45■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms