RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-238ENST00000556288 THSD4Q6ZMP0 1018 aa8.05□□□□□ -1.12
ATXN3-238ENST00000556288 BARGINQ6ZT62 677 aa8.05□□□□□ -1.12
ATXN3-238ENST00000556288 SLC4A5Q9BY07 1137 aa8.05□□□□□ -1.12
ATXN3-238ENST00000556288 PACS2Q86VP3 889 aa8.04□□□□□ -1.12
ATXN3-238ENST00000556288 KIAA1468Q9P260 1216 aa8.04□□□□□ -1.12
ATXN3-238ENST00000556288 RBM27Q9P2N5 1060 aaKnown RBP8.04□□□□□ -1.12
ATXN3-238ENST00000556288 TSKSQ9UJT2 592 aa8.04□□□□□ -1.12
ATXN3-238ENST00000556288 VPS9D1Q9Y2B5 631 aa8.04□□□□□ -1.12
ATXN3-238ENST00000556288 ONECUT3O60422 494 aaPredicted RBP8.03□□□□□ -1.12
ATXN3-238ENST00000556288 FAM198AQ9UFP1 575 aa8.03□□□□□ -1.12
ATXN3-238ENST00000556288 LCE2BO14633 110 aa8.02□□□□□ -1.13
ATXN3-238ENST00000556288 TTC13Q8NBP0 860 aa8.02□□□□□ -1.13
ATXN3-238ENST00000556288 MINK1Q8N4C8 1332 aaPredicted RBP8.02□□□□□ -1.13
ATXN3-238ENST00000556288 IRF6O14896 467 aa8.01□□□□□ -1.13
ATXN3-238ENST00000556288 MAP2K5Q13163 448 aa8.01□□□□□ -1.13
ATXN3-238ENST00000556288 FAM161AQ3B820 660 aa8.01□□□□□ -1.13
ATXN3-238ENST00000556288 RABGEF1Q9UJ41 708 aa8.01□□□□□ -1.13
ATXN3-238ENST00000556288 URB2Q14146 1524 aaKnown RBP8.01□□□□□ -1.13
ATXN3-238ENST00000556288 WDR62O43379 1518 aa8□□□□□ -1.13
ATXN3-238ENST00000556288 SLC24A3Q9HC58 644 aa8□□□□□ -1.13
ATXN3-238ENST00000556288 NBPF26B4DH59 902 aa7.99□□□□□ -1.13
ATXN3-238ENST00000556288 SMAPO00193 183 aa7.99□□□□□ -1.13
ATXN3-238ENST00000556288 NUDT18Q6ZVK8 323 aa7.99□□□□□ -1.13
ATXN3-238ENST00000556288 TATDN2Q93075 761 aa7.99□□□□□ -1.13
ATXN3-238ENST00000556288 PNMA3Q9UL41 463 aa7.99□□□□□ -1.13
ATXN3-238ENST00000556288 ADGRG1Q9Y653 693 aa7.99□□□□□ -1.13
ATXN3-238ENST00000556288 BHMG1C9JSJ3 638 aaPredicted RBP7.98□□□□□ -1.13
ATXN3-238ENST00000556288 OATP04181 439 aa7.98□□□□□ -1.13
ATXN3-238ENST00000556288 NBPF3Q9H094 633 aa7.98□□□□□ -1.13
ATXN3-238ENST00000556288 C3orf80F5H4A9 247 aa7.97□□□□□ -1.13
ATXN3-238ENST00000556288 MRPL50Q8N5N7 158 aaKnown RBP7.97□□□□□ -1.13
ATXN3-238ENST00000556288 RBM46Q8TBY0 533 aaKnown RBP7.97□□□□□ -1.13
ATXN3-238ENST00000556288 CCDC102AQ96A19 550 aa7.97□□□□□ -1.13
ATXN3-238ENST00000556288 AK7Q96M32 723 aa7.97□□□□□ -1.13
ATXN3-238ENST00000556288 SEPT9Q9UHD8 586 aaPredicted RBP7.97□□□□□ -1.13
ATXN3-238ENST00000556288 TOPBP1Q92547 1522 aa7.97□□□□□ -1.13
ATXN3-238ENST00000556288 ABCC8Q09428 1581 aa7.97□□□□□ -1.13
ATXN3-238ENST00000556288 DNMBPQ6XZF7 1577 aa7.96□□□□□ -1.14
ATXN3-238ENST00000556288 PXYLP1Q8TE99 480 aa7.95□□□□□ -1.14
ATXN3-238ENST00000556288 WNT2BQ93097 391 aa7.95□□□□□ -1.14
ATXN3-238ENST00000556288 EYA1Q99502 592 aa7.95□□□□□ -1.14
ATXN3-238ENST00000556288 METTL3Q86U44 580 aaKnown RBP7.94□□□□□ -1.14
ATXN3-238ENST00000556288 GOLGA8CPA6NN73 597 aa7.93□□□□□ -1.14
ATXN3-238ENST00000556288 ITGBL1O95965 494 aaPredicted RBP7.93□□□□□ -1.14
ATXN3-238ENST00000556288 FAM98CQ17RN3 349 aaKnown RBP7.93□□□□□ -1.14
ATXN3-238ENST00000556288 LAPTM4BQ86VI4 370 aa7.93□□□□□ -1.14
ATXN3-238ENST00000556288 RCCD1A6NED2 376 aa7.92□□□□□ -1.14
ATXN3-238ENST00000556288 TRIM66O15016 1216 aa7.92□□□□□ -1.14
ATXN3-238ENST00000556288 PHOX2BQ99453 314 aa7.92□□□□□ -1.14
ATXN3-238ENST00000556288 SOGA1O94964 1423 aa7.92□□□□□ -1.14
ATXN3-238ENST00000556288 HDGFP51858 240 aaKnown RBP7.91□□□□□ -1.14
ATXN3-238ENST00000556288 TRAF7Q6Q0C0 670 aa7.91□□□□□ -1.14
ATXN3-238ENST00000556288 NLRP7Q8WX94 980 aa7.91□□□□□ -1.14
ATXN3-238ENST00000556288 ZFRQ96KR1 1074 aaKnown RBP7.91□□□□□ -1.14
ATXN3-238ENST00000556288 RAD54L2Q9Y4B4 1467 aa7.91□□□□□ -1.14
ATXN3-238ENST00000556288 CUX1P39880 1505 aa7.91□□□□□ -1.14
ATXN3-238ENST00000556288 FGD5Q6ZNL6 1462 aa7.9□□□□□ -1.14
ATXN3-238ENST00000556288 IFT140Q96RY7 1462 aa7.9□□□□□ -1.14
ATXN3-238ENST00000556288 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.9□□□□□ -1.14
ATXN3-238ENST00000556288 DNAJB2P25686 324 aa7.9□□□□□ -1.14
ATXN3-238ENST00000556288 ZNF608Q9ULD9 1512 aaPredicted RBP7.89□□□□□ -1.15
ATXN3-238ENST00000556288 AQRO60306 1485 aaKnown RBP eCLIP7.88□□□□□ -1.15
ATXN3-238ENST00000556288 POLA1P09884 1462 aaPredicted RBP7.88□□□□□ -1.15
ATXN3-238ENST00000556288 TDRD9Q8NDG6 1382 aaKnown RBP7.88□□□□□ -1.15
ATXN3-238ENST00000556288 MDM2Q00987 491 aaPredicted RBP7.88□□□□□ -1.15
ATXN3-238ENST00000556288 LAPTM4AQ15012 233 aa7.88□□□□□ -1.15
ATXN3-238ENST00000556288 SAMD7Q7Z3H4 446 aa7.88□□□□□ -1.15
ATXN3-238ENST00000556288 TARBP1Q13395 1621 aaKnown RBP7.88□□□□□ -1.15
ATXN3-238ENST00000556288 PDE4DQ08499 809 aa7.87□□□□□ -1.15
ATXN3-238ENST00000556288 TTLL12Q14166 644 aaPredicted RBP7.87□□□□□ -1.15
ATXN3-238ENST00000556288 SWT1Q5T5J6 900 aaKnown RBP7.87□□□□□ -1.15
ATXN3-238ENST00000556288 ANKK1Q8NFD2 765 aa7.87□□□□□ -1.15
ATXN3-238ENST00000556288 TMEM134Q9H6X4 195 aa7.87□□□□□ -1.15
ATXN3-238ENST00000556288 EIF4G3O43432 1585 aaKnown RBP7.87□□□□□ -1.15
ATXN3-238ENST00000556288 WRNQ14191 1432 aaPredicted RBP eCLIP7.86□□□□□ -1.15
ATXN3-238ENST00000556288 CHD1O14646 1710 aa7.86□□□□□ -1.15
ATXN3-238ENST00000556288 SYNJ1O43426 1573 aa7.86□□□□□ -1.15
ATXN3-238ENST00000556288 CLCN1P35523 988 aa7.86□□□□□ -1.15
ATXN3-238ENST00000556288 SLC4A3P48751 1232 aa7.86□□□□□ -1.15
ATXN3-238ENST00000556288 AMHR2Q16671 573 aa7.86□□□□□ -1.15
ATXN3-238ENST00000556288 LRCH3Q96II8 777 aa7.86□□□□□ -1.15
ATXN3-238ENST00000556288 DAXXQ9UER7 740 aaPredicted RBP7.86□□□□□ -1.15
ATXN3-238ENST00000556288 PBRM1Q86U86 1689 aa7.86□□□□□ -1.15
ATXN3-238ENST00000556288 BIVM-ERCC5R4GMW8 1640 aa7.85□□□□□ -1.15
ATXN3-238ENST00000556288 RNF40O75150 1001 aa7.85□□□□□ -1.15
ATXN3-238ENST00000556288 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.85□□□□□ -1.15
ATXN3-238ENST00000556288 TOP2BQ02880 1626 aa7.85□□□□□ -1.15
ATXN3-238ENST00000556288 GFRA3O60609 400 aa7.84□□□□□ -1.15
ATXN3-238ENST00000556288 GPCPD1Q9NPB8 672 aa7.84□□□□□ -1.15
ATXN3-238ENST00000556288 SOWAHBA6NEL2 793 aa7.83□□□□□ -1.16
ATXN3-238ENST00000556288 BCAMP50895 628 aa7.83□□□□□ -1.16
ATXN3-238ENST00000556288 SLF2Q8IX21 1173 aa7.83□□□□□ -1.16
ATXN3-238ENST00000556288 PARP9Q8IXQ6 854 aa7.83□□□□□ -1.16
ATXN3-238ENST00000556288 CHMP7Q8WUX9 453 aaPredicted RBP7.83□□□□□ -1.16
ATXN3-238ENST00000556288 REPIN1Q9BWE0 567 aaKnown RBP7.83□□□□□ -1.16
ATXN3-238ENST00000556288 WDR97A6NE52 1622 aa7.82□□□□□ -1.16
ATXN3-238ENST00000556288 DDX11L8A8MPP1 907 aa7.82□□□□□ -1.16
ATXN3-238ENST00000556288 NEUROD2Q15784 382 aa7.82□□□□□ -1.16
ATXN3-238ENST00000556288 RSPH4AQ5TD94 716 aa7.82□□□□□ -1.16
ATXN3-238ENST00000556288 TMUB1Q9BVT8 246 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms