RNA–Protein interactions for RNA: ENST00000556220.5

ATXN3-236, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-236ENST00000556220 C2orf72A6NCS6 295 aa11.66□□□□□ -0.54
ATXN3-236ENST00000556220 PPP1R37O75864 691 aa11.66□□□□□ -0.54
ATXN3-236ENST00000556220 SPNS2Q8IVW8 549 aa11.66□□□□□ -0.54
ATXN3-236ENST00000556220 SETD1BQ9UPS6 1966 aaKnown RBP11.66□□□□□ -0.54
ATXN3-236ENST00000556220 STRCQ7RTU9 1775 aa11.66□□□□□ -0.54
ATXN3-236ENST00000556220 C9orf84Q5VXU9 1444 aa11.65□□□□□ -0.54
ATXN3-236ENST00000556220 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.65□□□□□ -0.55
ATXN3-236ENST00000556220 HECW1Q76N89 1606 aa11.64□□□□□ -0.55
ATXN3-236ENST00000556220 IQSEC2Q5JU85 1478 aa11.64□□□□□ -0.55
ATXN3-236ENST00000556220 EFCAB2Q5VUJ9 269 aa11.64□□□□□ -0.55
ATXN3-236ENST00000556220 TMC2Q8TDI7 906 aa11.64□□□□□ -0.55
ATXN3-236ENST00000556220 FER1L4A9Z1Z3 1794 aa11.64□□□□□ -0.55
ATXN3-236ENST00000556220 PLCH2O75038 1416 aa11.63□□□□□ -0.55
ATXN3-236ENST00000556220 PREX1Q8TCU6 1659 aa11.63□□□□□ -0.55
ATXN3-236ENST00000556220 RANGAP1P46060 587 aaPredicted RBP11.63□□□□□ -0.55
ATXN3-236ENST00000556220 KRTAP3-3Q9BYR6 98 aa11.63□□□□□ -0.55
ATXN3-236ENST00000556220 KRTAP3-2Q9BYR7 98 aa11.63□□□□□ -0.55
ATXN3-236ENST00000556220 LTBP4Q8N2S1 1624 aa11.63□□□□□ -0.55
ATXN3-236ENST00000556220 SAMD9Q5K651 1589 aa11.62□□□□□ -0.55
ATXN3-236ENST00000556220 CFAP74Q9C0B2 1584 aa11.62□□□□□ -0.55
ATXN3-236ENST00000556220 UBAP1LF5GYI3 381 aa11.62□□□□□ -0.55
ATXN3-236ENST00000556220 ARSIQ5FYB1 569 aa11.61□□□□□ -0.55
ATXN3-236ENST00000556220 AFAP1Q8N556 730 aa11.61□□□□□ -0.55
ATXN3-236ENST00000556220 MMRN1Q13201 1228 aa11.6□□□□□ -0.55
ATXN3-236ENST00000556220 VARS2Q5ST30 1063 aaKnown RBP11.6□□□□□ -0.55
ATXN3-236ENST00000556220 TRAPPC8Q9Y2L5 1435 aa11.6□□□□□ -0.55
ATXN3-236ENST00000556220 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
ATXN3-236ENST00000556220 RYDENQ9NUL5 291 aaKnown RBP11.59□□□□□ -0.55
ATXN3-236ENST00000556220 MYT1LQ9UL68 1186 aa11.59□□□□□ -0.55
ATXN3-236ENST00000556220 SLC34A2O95436 690 aa11.58□□□□□ -0.56
ATXN3-236ENST00000556220 NCOA1Q15788 1441 aa11.58□□□□□ -0.56
ATXN3-236ENST00000556220 ZNF687Q8N1G0 1237 aa11.56□□□□□ -0.56
ATXN3-236ENST00000556220 ZNF335Q9H4Z2 1342 aaPredicted RBP11.56□□□□□ -0.56
ATXN3-236ENST00000556220 NCKAP5LQ9HCH0 1330 aa11.56□□□□□ -0.56
ATXN3-236ENST00000556220 NKX1-1Q15270 411 aaPredicted RBP11.55□□□□□ -0.56
ATXN3-236ENST00000556220 ZNF518AQ6AHZ1 1483 aa11.54□□□□□ -0.56
ATXN3-236ENST00000556220 CDK11AQ9UQ88 783 aaPredicted RBP11.53□□□□□ -0.56
ATXN3-236ENST00000556220 ZNF316A6NFI3 1004 aaPredicted RBP11.52□□□□□ -0.57
ATXN3-236ENST00000556220 HSPA1LP34931 641 aa11.52□□□□□ -0.57
ATXN3-236ENST00000556220 KHSRPQ92945 711 aaKnown RBP eCLIP11.52□□□□□ -0.57
ATXN3-236ENST00000556220 GPHNQ9NQX3 736 aaPredicted RBP11.51□□□□□ -0.57
ATXN3-236ENST00000556220 ATP1B4Q9UN42 357 aaPredicted RBP11.51□□□□□ -0.57
ATXN3-236ENST00000556220 PCDHGA4Q9Y5G9 962 aa11.51□□□□□ -0.57
ATXN3-236ENST00000556220 CNTLNQ9NXG0 1405 aa11.51□□□□□ -0.57
ATXN3-236ENST00000556220 CDK13Q14004 1512 aaKnown RBP11.5□□□□□ -0.57
ATXN3-236ENST00000556220 FOXK1P85037 733 aa11.5□□□□□ -0.57
ATXN3-236ENST00000556220 MLH3Q9UHC1 1453 aa11.5□□□□□ -0.57
ATXN3-236ENST00000556220 TOM1O60784 492 aa11.49□□□□□ -0.57
ATXN3-236ENST00000556220 ZMYM3Q14202 1370 aa11.49□□□□□ -0.57
ATXN3-236ENST00000556220 AGLP35573 1532 aa11.49□□□□□ -0.57
ATXN3-236ENST00000556220 KDM5CP41229 1560 aa11.49□□□□□ -0.57
ATXN3-236ENST00000556220 PIP4K2BP78356 416 aa11.48□□□□□ -0.57
ATXN3-236ENST00000556220 NPATQ14207 1427 aa11.48□□□□□ -0.57
ATXN3-236ENST00000556220 REREQ9P2R6 1566 aa11.48□□□□□ -0.57
ATXN3-236ENST00000556220 CAMSAP1Q5T5Y3 1602 aa11.48□□□□□ -0.57
ATXN3-236ENST00000556220 C3P01024 1663 aa11.47□□□□□ -0.57
ATXN3-236ENST00000556220 NUDT7P0C024 238 aa11.47□□□□□ -0.57
ATXN3-236ENST00000556220 DIP2CQ9Y2E4 1556 aa11.46□□□□□ -0.57
ATXN3-236ENST00000556220 PLPP6Q8IY26 295 aa11.45□□□□□ -0.58
ATXN3-236ENST00000556220 PTCD2Q8WV60 388 aaKnown RBP11.45□□□□□ -0.58
ATXN3-236ENST00000556220 ARHGAP5Q13017 1502 aa11.45□□□□□ -0.58
ATXN3-236ENST00000556220 PLA2R1Q13018 1463 aa11.44□□□□□ -0.58
ATXN3-236ENST00000556220 TROQ12816 1431 aaPredicted RBP11.43□□□□□ -0.58
ATXN3-236ENST00000556220 MED1Q15648 1581 aaPredicted RBP11.43□□□□□ -0.58
ATXN3-236ENST00000556220 LHX6Q9UPM6 363 aa11.43□□□□□ -0.58
ATXN3-236ENST00000556220 TCOF1Q13428 1488 aaKnown RBP11.43□□□□□ -0.58
ATXN3-236ENST00000556220 DSG2Q14126 1118 aa11.42□□□□□ -0.58
ATXN3-236ENST00000556220 GTPBP6O43824 516 aaPredicted RBP11.41□□□□□ -0.58
ATXN3-236ENST00000556220 ABCA6Q8N139 1617 aa11.41□□□□□ -0.58
ATXN3-236ENST00000556220 CLIP1P30622 1438 aa11.41□□□□□ -0.58
ATXN3-236ENST00000556220 FMN1Q68DA7 1419 aa11.41□□□□□ -0.58
ATXN3-236ENST00000556220 MYO5CQ9NQX4 1742 aa11.4□□□□□ -0.58
ATXN3-236ENST00000556220 EEA1Q15075 1411 aa11.4□□□□□ -0.58
ATXN3-236ENST00000556220 PSDA5PKW4 1024 aaPredicted RBP11.39□□□□□ -0.59
ATXN3-236ENST00000556220 TBC1D12O60347 775 aa11.39□□□□□ -0.59
ATXN3-236ENST00000556220 PBX2P40425 430 aa11.39□□□□□ -0.59
ATXN3-236ENST00000556220 PTPRKQ15262 1439 aa11.39□□□□□ -0.59
ATXN3-236ENST00000556220 CRISPLD2Q9H0B8 497 aa11.39□□□□□ -0.59
ATXN3-236ENST00000556220 KIF14Q15058 1648 aa11.38□□□□□ -0.59
ATXN3-236ENST00000556220 GGT6Q6P531 493 aa11.38□□□□□ -0.59
ATXN3-236ENST00000556220 SPAG9O60271 1321 aaKnown RBP11.37□□□□□ -0.59
ATXN3-236ENST00000556220 PTGER2P43116 358 aa11.37□□□□□ -0.59
ATXN3-236ENST00000556220 SHANK2Q9UPX8 1470 aa11.36□□□□□ -0.59
ATXN3-236ENST00000556220 CPS1P31327 1500 aa11.35□□□□□ -0.59
ATXN3-236ENST00000556220 UBTFP17480 764 aaKnown RBP11.35□□□□□ -0.59
ATXN3-236ENST00000556220 PDE4AP27815 886 aa11.35□□□□□ -0.59
ATXN3-236ENST00000556220 HNRNPMP52272 730 aaKnown RBP eCLIP11.35□□□□□ -0.59
ATXN3-236ENST00000556220 ANKRD13DQ6ZTN6 518 aa11.35□□□□□ -0.59
ATXN3-236ENST00000556220 RGS17Q9UGC6 210 aaPredicted RBP11.35□□□□□ -0.59
ATXN3-236ENST00000556220 ZNF777Q9ULD5 760 aaPredicted RBP11.35□□□□□ -0.59
ATXN3-236ENST00000556220 ABCC1P33527 1531 aa11.35□□□□□ -0.59
ATXN3-236ENST00000556220 KIDINS220Q9ULH0 1771 aa11.34□□□□□ -0.59
ATXN3-236ENST00000556220 MROH2AA6NES4 1674 aa11.34□□□□□ -0.59
ATXN3-236ENST00000556220 CEP170BQ9Y4F5 1589 aaPredicted RBP11.34□□□□□ -0.59
ATXN3-236ENST00000556220 LSM11P83369 360 aaKnown RBP eCLIP11.34□□□□□ -0.59
ATXN3-236ENST00000556220 ANKLE2Q86XL3 938 aa11.34□□□□□ -0.59
ATXN3-236ENST00000556220 A2ML1A8K2U0 1454 aa11.32□□□□□ -0.6
ATXN3-236ENST00000556220 ARHGAP35Q9NRY4 1499 aa11.32□□□□□ -0.6
ATXN3-236ENST00000556220 RNF166Q96A37 237 aaPredicted RBP11.32□□□□□ -0.6
ATXN3-236ENST00000556220 CDC42BPBQ9Y5S2 1711 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms