RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 CWC22Q9HCG8 908 aaKnown RBP10.19□□□□□ -0.78
SYNE2-220ENST00000555612 DDX58O95786 925 aaKnown RBP10.19□□□□□ -0.78
SYNE2-220ENST00000555612 SF3B2Q13435 895 aaKnown RBP10.18□□□□□ -0.78
SYNE2-220ENST00000555612 GPRASP1Q5JY77 1395 aa10.18□□□□□ -0.78
SYNE2-220ENST00000555612 HMOX1P09601 288 aa10.18□□□□□ -0.78
SYNE2-220ENST00000555612 ARHGAP5Q13017 1502 aa10.18□□□□□ -0.78
SYNE2-220ENST00000555612 RIPK4P57078 832 aa10.18□□□□□ -0.78
SYNE2-220ENST00000555612 GGNBP2Q9H3C7 697 aa10.18□□□□□ -0.78
SYNE2-220ENST00000555612 PRXQ9BXM0 1461 aa10.18□□□□□ -0.78
SYNE2-220ENST00000555612 SAMD1Q6SPF0 538 aaPredicted RBP10.18□□□□□ -0.78
SYNE2-220ENST00000555612 GBP4Q96PP9 640 aa10.18□□□□□ -0.78
SYNE2-220ENST00000555612 NAP1L5Q96NT1 182 aaPredicted RBP10.18□□□□□ -0.78
SYNE2-220ENST00000555612 AIMP1Q12904 312 aaKnown RBP10.17□□□□□ -0.78
SYNE2-220ENST00000555612 TCEAL9Q9UHQ7 104 aa10.17□□□□□ -0.78
SYNE2-220ENST00000555612 RRBP1Q9P2E9 1410 aaKnown RBP10.17□□□□□ -0.78
SYNE2-220ENST00000555612 KIF16BQ96L93 1317 aa10.17□□□□□ -0.78
SYNE2-220ENST00000555612 DHX16O60231 1041 aaKnown RBP10.17□□□□□ -0.78
SYNE2-220ENST00000555612 APPP05067 770 aa10.17□□□□□ -0.78
SYNE2-220ENST00000555612 FKBP5Q13451 457 aaPredicted RBP10.17□□□□□ -0.78
SYNE2-220ENST00000555612 L1TD1Q5T7N2 865 aaKnown RBP10.17□□□□□ -0.78
SYNE2-220ENST00000555612 ABTB2Q8N961 1025 aa10.17□□□□□ -0.78
SYNE2-220ENST00000555612 AKAP17AQ02040 695 aaKnown RBP10.17□□□□□ -0.78
SYNE2-220ENST00000555612 FAM177BA6PVY3 158 aa10.17□□□□□ -0.78
SYNE2-220ENST00000555612 ANKRD45Q5TZF3 282 aa10.17□□□□□ -0.78
SYNE2-220ENST00000555612 TSPYL4Q9UJ04 414 aa10.17□□□□□ -0.78
SYNE2-220ENST00000555612 PDE3BQ13370 1112 aa10.16□□□□□ -0.78
SYNE2-220ENST00000555612 APAF1O14727 1248 aa10.16□□□□□ -0.78
SYNE2-220ENST00000555612 ZKSCAN2Q63HK3 967 aa10.16□□□□□ -0.78
SYNE2-220ENST00000555612 GRIN2BQ13224 1484 aa10.16□□□□□ -0.78
SYNE2-220ENST00000555612 ANO8Q9HCE9 1232 aaPredicted RBP10.16□□□□□ -0.78
SYNE2-220ENST00000555612 TSHZ2Q9NRE2 1034 aa10.15□□□□□ -0.78
SYNE2-220ENST00000555612 SF3A1Q15459 793 aaKnown RBP10.15□□□□□ -0.78
SYNE2-220ENST00000555612 FOXD4L5Q5VV16 416 aaPredicted RBP10.15□□□□□ -0.78
SYNE2-220ENST00000555612 THEMISQ8N1K5 641 aaPredicted RBP10.15□□□□□ -0.78
SYNE2-220ENST00000555612 FOXD4L4Q8WXT5 416 aaPredicted RBP10.15□□□□□ -0.78
SYNE2-220ENST00000555612 RBM42Q9BTD8 480 aaKnown RBP10.15□□□□□ -0.78
SYNE2-220ENST00000555612 TPM4P67936 248 aa10.15□□□□□ -0.78
SYNE2-220ENST00000555612 SYNE3Q6ZMZ3 975 aa10.15□□□□□ -0.78
SYNE2-220ENST00000555612 DIAPH3Q9NSV4 1193 aa10.15□□□□□ -0.78
SYNE2-220ENST00000555612 IFIT2P09913 472 aaKnown RBP10.15□□□□□ -0.79
SYNE2-220ENST00000555612 GZF1Q9H116 711 aaPredicted RBP10.15□□□□□ -0.79
SYNE2-220ENST00000555612 RIC3Q7Z5B4 369 aa10.15□□□□□ -0.79
SYNE2-220ENST00000555612 E9PSI1 815 aa10.14□□□□□ -0.79
SYNE2-220ENST00000555612 LRRFIP1Q32MZ4 808 aaKnown RBP10.14□□□□□ -0.79
SYNE2-220ENST00000555612 KIF3AQ9Y496 699 aa10.14□□□□□ -0.79
SYNE2-220ENST00000555612 MIA2Q96PC5 1412 aa10.14□□□□□ -0.79
SYNE2-220ENST00000555612 NOC3LQ8WTT2 800 aaKnown RBP10.14□□□□□ -0.79
SYNE2-220ENST00000555612 MSNP26038 577 aaKnown RBP10.14□□□□□ -0.79
SYNE2-220ENST00000555612 G3BP1Q13283 466 aaKnown RBP eCLIP10.13□□□□□ -0.79
SYNE2-220ENST00000555612 H3BQV1 296 aa10.13□□□□□ -0.79
SYNE2-220ENST00000555612 IFFO2Q5TF58 517 aa10.13□□□□□ -0.79
SYNE2-220ENST00000555612 SYNJ2O15056 1496 aa10.13□□□□□ -0.79
SYNE2-220ENST00000555612 TOP2BQ02880 1626 aa10.13□□□□□ -0.79
SYNE2-220ENST00000555612 RTN4Q9NQC3 1192 aaKnown RBP10.13□□□□□ -0.79
SYNE2-220ENST00000555612 NESP48681 1621 aa10.13□□□□□ -0.79
SYNE2-220ENST00000555612 PLIN1O60240 522 aa10.13□□□□□ -0.79
SYNE2-220ENST00000555612 SYAP1Q96A49 352 aaPredicted RBP10.13□□□□□ -0.79
SYNE2-220ENST00000555612 LAMC3Q9Y6N6 1575 aa10.13□□□□□ -0.79
SYNE2-220ENST00000555612 ST18O60284 1047 aa10.12□□□□□ -0.79
SYNE2-220ENST00000555612 RAPGEF3O95398 923 aa10.12□□□□□ -0.79
SYNE2-220ENST00000555612 FAM184AQ8NB25 1140 aa10.12□□□□□ -0.79
SYNE2-220ENST00000555612 UNC13AQ9UPW8 1703 aa10.12□□□□□ -0.79
SYNE2-220ENST00000555612 ANKRD50Q9ULJ7 1429 aa10.12□□□□□ -0.79
SYNE2-220ENST00000555612 MRC2Q9UBG0 1479 aa10.12□□□□□ -0.79
SYNE2-220ENST00000555612 WWC1Q8IX03 1113 aa10.12□□□□□ -0.79
SYNE2-220ENST00000555612 COG6Q9Y2V7 657 aa10.12□□□□□ -0.79
SYNE2-220ENST00000555612 FYB1O15117 783 aa10.12□□□□□ -0.79
SYNE2-220ENST00000555612 PES1O00541 588 aaKnown RBP10.12□□□□□ -0.79
SYNE2-220ENST00000555612 CFAP70Q5T0N1 1121 aa10.11□□□□□ -0.79
SYNE2-220ENST00000555612 ANKLE2Q86XL3 938 aa10.11□□□□□ -0.79
SYNE2-220ENST00000555612 NEUROD6Q96NK8 337 aa10.11□□□□□ -0.79
SYNE2-220ENST00000555612 RBM19Q9Y4C8 960 aaKnown RBP10.11□□□□□ -0.79
SYNE2-220ENST00000555612 API5Q9BZZ5 524 aaKnown RBP10.11□□□□□ -0.79
SYNE2-220ENST00000555612 CSPP1Q1MSJ5 1256 aa10.11□□□□□ -0.79
SYNE2-220ENST00000555612 SLC26A8Q96RN1 970 aa10.11□□□□□ -0.79
SYNE2-220ENST00000555612 CCDC27Q2M243 656 aa10.1□□□□□ -0.79
SYNE2-220ENST00000555612 TOM1L2Q6ZVM7 507 aa10.1□□□□□ -0.79
SYNE2-220ENST00000555612 PRAM1Q96QH2 718 aa10.1□□□□□ -0.79
SYNE2-220ENST00000555612 FGD6Q6ZV73 1430 aa10.1□□□□□ -0.79
SYNE2-220ENST00000555612 CEP89Q96ST8 783 aa10.1□□□□□ -0.79
SYNE2-220ENST00000555612 SCAPERQ9BY12 1400 aa10.1□□□□□ -0.79
SYNE2-220ENST00000555612 WASHC2AQ641Q2 1341 aa10.1□□□□□ -0.79
SYNE2-220ENST00000555612 MCTP1Q6DN14 999 aa10.1□□□□□ -0.79
SYNE2-220ENST00000555612 DDX54Q8TDD1 881 aaKnown RBP10.1□□□□□ -0.79
SYNE2-220ENST00000555612 PTMSP20962 102 aa10.09□□□□□ -0.79
SYNE2-220ENST00000555612 GNAI1P63096 354 aa10.09□□□□□ -0.79
SYNE2-220ENST00000555612 CPLX2Q6PUV4 134 aaKnown RBP10.09□□□□□ -0.79
SYNE2-220ENST00000555612 ABCA10Q8WWZ4 1543 aa10.09□□□□□ -0.79
SYNE2-220ENST00000555612 RUFY2Q8WXA3 655 aa10.09□□□□□ -0.79
SYNE2-220ENST00000555612 RUNDC1Q96C34 613 aa10.09□□□□□ -0.79
SYNE2-220ENST00000555612 PRKRIP1Q9H875 184 aaPredicted RBP10.09□□□□□ -0.79
SYNE2-220ENST00000555612 TATP17735 454 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-220ENST00000555612 TRDNQ13061 729 aa10.08□□□□□ -0.8
SYNE2-220ENST00000555612 FOXD4L6Q3SYB3 417 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-220ENST00000555612 PLEKHO1Q53GL0 409 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-220ENST00000555612 FOXD4L3Q6VB84 417 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-220ENST00000555612 NFXL1Q6ZNB6 911 aa10.08□□□□□ -0.8
SYNE2-220ENST00000555612 XPCQ01831 940 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-220ENST00000555612 TPD52L1Q16890 204 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-220ENST00000555612 ANO2Q9NQ90 1003 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms