RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 TXNDC2Q86VQ3 553 aa14.7□□□□□ -0.06
SYNE2-215ENST00000554997 KDM5AP29375 1690 aaKnown RBP14.69□□□□□ -0.06
SYNE2-215ENST00000554997 LTKP29376 864 aa14.69□□□□□ -0.06
SYNE2-215ENST00000554997 KDM2AQ9Y2K7 1162 aa14.69□□□□□ -0.06
SYNE2-215ENST00000554997 ADGRB3O60242 1522 aa14.69□□□□□ -0.06
SYNE2-215ENST00000554997 TONSLQ96HA7 1378 aa14.69□□□□□ -0.06
SYNE2-215ENST00000554997 HSPA2P54652 639 aa14.68□□□□□ -0.06
SYNE2-215ENST00000554997 RIMS2Q9UQ26 1411 aa14.67□□□□□ -0.06
SYNE2-215ENST00000554997 NUTM2DQ5VT03 806 aaPredicted RBP14.67□□□□□ -0.06
SYNE2-215ENST00000554997 ARHGAP23Q9P227 1491 aa14.67□□□□□ -0.06
SYNE2-215ENST00000554997 ZFYVE9O95405 1425 aa14.66□□□□□ -0.06
SYNE2-215ENST00000554997 UBR1Q8IWV7 1749 aa14.66□□□□□ -0.06
SYNE2-215ENST00000554997 KIF1BO60333 1816 aa14.66□□□□□ -0.06
SYNE2-215ENST00000554997 PPP1R15AO75807 674 aaPredicted RBP14.66□□□□□ -0.06
SYNE2-215ENST00000554997 SLIT1O75093 1534 aa14.66□□□□□ -0.06
SYNE2-215ENST00000554997 ZNF142P52746 1687 aaPredicted RBP14.65□□□□□ -0.06
SYNE2-215ENST00000554997 ADGRF5Q8IZF2 1346 aa14.65□□□□□ -0.06
SYNE2-215ENST00000554997 NCKAP5LQ9HCH0 1330 aa14.65□□□□□ -0.06
SYNE2-215ENST00000554997 ZEB1P37275 1124 aaPredicted RBP14.62□□□□□ -0.07
SYNE2-215ENST00000554997 NEXMIFQ5QGS0 1516 aa14.61□□□□□ -0.07
SYNE2-215ENST00000554997 BCANQ96GW7 911 aa14.61□□□□□ -0.07
SYNE2-215ENST00000554997 PLEKHG1Q9ULL1 1385 aa14.6□□□□□ -0.07
SYNE2-215ENST00000554997 C14orf93Q9H972 538 aaKnown RBP14.6□□□□□ -0.07
SYNE2-215ENST00000554997 DMRT2Q9Y5R5 561 aa14.6□□□□□ -0.07
SYNE2-215ENST00000554997 SCAF11Q99590 1463 aaKnown RBP14.6□□□□□ -0.07
SYNE2-215ENST00000554997 MYOM2P54296 1465 aa14.59□□□□□ -0.07
SYNE2-215ENST00000554997 NBPF8Q3BBV2 869 aa14.59□□□□□ -0.07
SYNE2-215ENST00000554997 TBX22Q9Y458 520 aa14.59□□□□□ -0.07
SYNE2-215ENST00000554997 MED14O60244 1454 aa14.58□□□□□ -0.08
SYNE2-215ENST00000554997 NRXN1Q9ULB1 1477 aa14.58□□□□□ -0.08
SYNE2-215ENST00000554997 STRCQ7RTU9 1775 aa14.58□□□□□ -0.08
SYNE2-215ENST00000554997 MYO5BQ9ULV0 1848 aa14.57□□□□□ -0.08
SYNE2-215ENST00000554997 CFAP70Q5T0N1 1121 aa14.57□□□□□ -0.08
SYNE2-215ENST00000554997 SLC26A8Q96RN1 970 aa14.57□□□□□ -0.08
SYNE2-215ENST00000554997 NPHP4O75161 1426 aaPredicted RBP14.56□□□□□ -0.08
SYNE2-215ENST00000554997 PIK3C2GO75747 1445 aa14.56□□□□□ -0.08
SYNE2-215ENST00000554997 PRAG1Q86YV5 1406 aa14.56□□□□□ -0.08
SYNE2-215ENST00000554997 PPLO60437 1756 aa14.55□□□□□ -0.08
SYNE2-215ENST00000554997 IFT172Q9UG01 1749 aa14.53□□□□□ -0.08
SYNE2-215ENST00000554997 ADAMTS13Q76LX8 1427 aa14.53□□□□□ -0.08
SYNE2-215ENST00000554997 NBPF1Q3BBV0 1214 aa14.53□□□□□ -0.08
SYNE2-215ENST00000554997 TMEM132EQ6IEE7 984 aa14.52□□□□□ -0.09
SYNE2-215ENST00000554997 SETBP1Q9Y6X0 1596 aa14.51□□□□□ -0.09
SYNE2-215ENST00000554997 METP08581 1390 aa14.5□□□□□ -0.09
SYNE2-215ENST00000554997 ALKQ9UM73 1620 aa14.5□□□□□ -0.09
SYNE2-215ENST00000554997 PIK3R4Q99570 1358 aa14.49□□□□□ -0.09
SYNE2-215ENST00000554997 KCNA6P17658 529 aa14.48□□□□□ -0.09
SYNE2-215ENST00000554997 AMOTL2Q9Y2J4 779 aa14.48□□□□□ -0.09
SYNE2-215ENST00000554997 POLR1AO95602 1720 aaPredicted RBP14.48□□□□□ -0.09
SYNE2-215ENST00000554997 ROCK2O75116 1388 aaKnown RBP14.47□□□□□ -0.09
SYNE2-215ENST00000554997 SIRT1Q96EB6 747 aa14.47□□□□□ -0.09
SYNE2-215ENST00000554997 CARD11Q9BXL7 1154 aa14.47□□□□□ -0.09
SYNE2-215ENST00000554997 NRXN3Q9Y4C0 1643 aa14.46□□□□□ -0.09
SYNE2-215ENST00000554997 GPRASP1Q5JY77 1395 aa14.46□□□□□ -0.1
SYNE2-215ENST00000554997 ABCC11Q96J66 1382 aa14.46□□□□□ -0.1
SYNE2-215ENST00000554997 IQGAP1P46940 1657 aa14.46□□□□□ -0.1
SYNE2-215ENST00000554997 DIP2AQ14689 1571 aa14.45□□□□□ -0.1
SYNE2-215ENST00000554997 STK26Q9P289 416 aa14.45□□□□□ -0.1
SYNE2-215ENST00000554997 LRPPRCP42704 1394 aaKnown RBP14.45□□□□□ -0.1
SYNE2-215ENST00000554997 RALGAPBQ86X10 1494 aa14.44□□□□□ -0.1
SYNE2-215ENST00000554997 TRAK1Q9UPV9 953 aa14.44□□□□□ -0.1
SYNE2-215ENST00000554997 YTHDC2Q9H6S0 1430 aaKnown RBP14.43□□□□□ -0.1
SYNE2-215ENST00000554997 KIAA1210Q9ULL0 1709 aa14.43□□□□□ -0.1
SYNE2-215ENST00000554997 ADGRB1O14514 1584 aa14.43□□□□□ -0.1
SYNE2-215ENST00000554997 PTPRUQ92729 1446 aa14.42□□□□□ -0.1
SYNE2-215ENST00000554997 LAMC1P11047 1609 aa14.41□□□□□ -0.1
SYNE2-215ENST00000554997 TRPM1Q7Z4N2 1603 aa14.41□□□□□ -0.1
SYNE2-215ENST00000554997 ZNF335Q9H4Z2 1342 aaPredicted RBP14.41□□□□□ -0.1
SYNE2-215ENST00000554997 EIF4G2P78344 907 aaKnown RBP eCLIP14.39□□□□□ -0.11
SYNE2-215ENST00000554997 WAPLQ7Z5K2 1190 aa14.39□□□□□ -0.11
SYNE2-215ENST00000554997 PROSER2Q86WR7 435 aaPredicted RBP14.39□□□□□ -0.11
SYNE2-215ENST00000554997 POGKQ9P215 609 aa14.39□□□□□ -0.11
SYNE2-215ENST00000554997 ASXL1Q8IXJ9 1541 aa14.39□□□□□ -0.11
SYNE2-215ENST00000554997 TECPR2O15040 1411 aa14.39□□□□□ -0.11
SYNE2-215ENST00000554997 SETD1AO15047 1707 aaKnown RBP14.38□□□□□ -0.11
SYNE2-215ENST00000554997 PRAM1Q96QH2 718 aa14.38□□□□□ -0.11
SYNE2-215ENST00000554997 ST20-MTHFSA0A0A6YYL1 179 aa14.37□□□□□ -0.11
SYNE2-215ENST00000554997 FAM135BQ49AJ0 1406 aa14.37□□□□□ -0.11
SYNE2-215ENST00000554997 ROBO2Q9HCK4 1378 aa14.36□□□□□ -0.11
SYNE2-215ENST00000554997 SLC24A1O60721 1099 aa14.36□□□□□ -0.11
SYNE2-215ENST00000554997 EIF3AQ14152 1382 aaKnown RBP14.35□□□□□ -0.11
SYNE2-215ENST00000554997 HSPA5P11021 654 aaKnown RBP14.35□□□□□ -0.11
SYNE2-215ENST00000554997 CHD2O14647 1828 aaKnown RBP14.35□□□□□ -0.11
SYNE2-215ENST00000554997 CENPJQ9HC77 1338 aaPredicted RBP14.35□□□□□ -0.11
SYNE2-215ENST00000554997 DLC1Q96QB1 1528 aa14.35□□□□□ -0.11
SYNE2-215ENST00000554997 USP47Q96K76 1375 aa14.34□□□□□ -0.11
SYNE2-215ENST00000554997 PTCH1Q13635 1447 aa14.34□□□□□ -0.11
SYNE2-215ENST00000554997 NCOA3Q9Y6Q9 1424 aa14.33□□□□□ -0.11
SYNE2-215ENST00000554997 SAFB2Q14151 953 aaKnown RBP eCLIP14.33□□□□□ -0.12
SYNE2-215ENST00000554997 RBM33Q96EV2 1170 aaKnown RBP14.33□□□□□ -0.12
SYNE2-215ENST00000554997 LTBP4Q8N2S1 1624 aa14.33□□□□□ -0.12
SYNE2-215ENST00000554997 PLEKHH1Q9ULM0 1364 aa14.33□□□□□ -0.12
SYNE2-215ENST00000554997 NKTRP30414 1462 aaKnown RBP14.32□□□□□ -0.12
SYNE2-215ENST00000554997 NWD1Q149M9 1564 aa14.32□□□□□ -0.12
SYNE2-215ENST00000554997 TESK2Q96S53 571 aa14.32□□□□□ -0.12
SYNE2-215ENST00000554997 C19orf44Q9H6X5 657 aa14.32□□□□□ -0.12
SYNE2-215ENST00000554997 XRN1Q8IZH2 1706 aaKnown RBP14.31□□□□□ -0.12
SYNE2-215ENST00000554997 TMEM94Q12767 1356 aa14.31□□□□□ -0.12
SYNE2-215ENST00000554997 CPS1P31327 1500 aa14.31□□□□□ -0.12
SYNE2-215ENST00000554997 HIRIP3Q9BW71 556 aaPredicted RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms