RNA–Protein interactions for RNA: ENST00000554956.5

PSMC6-208, Transcript of proteasome 26S subunit, ATPase 6, human

TSL 3

Gene PSMC6, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMC6-208	ENST00000554956	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.64	□□□□□ -0.55
PSMC6-208	ENST00000554956	RNF40	O75150	1001 aa		11.64	□□□□□ -0.55
PSMC6-208	ENST00000554956	SLC24A3	Q9HC58	644 aa		11.64	□□□□□ -0.55
PSMC6-208	ENST00000554956	TPRN	Q4KMQ1	711 aa		11.63	□□□□□ -0.55
PSMC6-208	ENST00000554956	HPS5	Q9UPZ3	1129 aa		11.62	□□□□□ -0.55
PSMC6-208	ENST00000554956	HDGF	P51858	240 aa	Known RBP	11.6	□□□□□ -0.55
PSMC6-208	ENST00000554956	WBP1L	Q9NX94	342 aa		11.6	□□□□□ -0.55
PSMC6-208	ENST00000554956	MDM2	Q00987	491 aa	Predicted RBP	11.59	□□□□□ -0.55
PSMC6-208	ENST00000554956	AK7	Q96M32	723 aa		11.58	□□□□□ -0.56
PSMC6-208	ENST00000554956	HCST	Q9UBK5	93 aa		11.57	□□□□□ -0.56
PSMC6-208	ENST00000554956	TSR3	Q9UJK0	312 aa	Known RBP	11.57	□□□□□ -0.56
PSMC6-208	ENST00000554956	TRIM66	O15016	1216 aa		11.56	□□□□□ -0.56
PSMC6-208	ENST00000554956	SLF2	Q8IX21	1173 aa		11.56	□□□□□ -0.56
PSMC6-208	ENST00000554956	PRKCSH	P14314	528 aa	Predicted RBP	11.55	□□□□□ -0.56
PSMC6-208	ENST00000554956	PPP4C	P60510	307 aa		11.55	□□□□□ -0.56
PSMC6-208	ENST00000554956	DAXX	Q9UER7	740 aa	Predicted RBP	11.55	□□□□□ -0.56
PSMC6-208	ENST00000554956	REPIN1	Q9BWE0	567 aa	Known RBP	11.54	□□□□□ -0.56
PSMC6-208	ENST00000554956	SLC10A3	P09131	477 aa		11.53	□□□□□ -0.56
PSMC6-208	ENST00000554956	DDX11L8	A8MPP1	907 aa		11.52	□□□□□ -0.57
PSMC6-208	ENST00000554956	AMHR2	Q16671	573 aa		11.52	□□□□□ -0.57
PSMC6-208	ENST00000554956	SLC4A3	P48751	1232 aa		11.51	□□□□□ -0.57
PSMC6-208	ENST00000554956	TTLL12	Q14166	644 aa	Predicted RBP	11.51	□□□□□ -0.57
PSMC6-208	ENST00000554956	APLP1	P51693	650 aa		11.5	□□□□□ -0.57
PSMC6-208	ENST00000554956	RDH13	Q8NBN7	331 aa		11.5	□□□□□ -0.57
PSMC6-208	ENST00000554956	TMUB1	Q9BVT8	246 aa		11.5	□□□□□ -0.57
PSMC6-208	ENST00000554956	GPCPD1	Q9NPB8	672 aa		11.5	□□□□□ -0.57
PSMC6-208	ENST00000554956	CLCN1	P35523	988 aa		11.49	□□□□□ -0.57
PSMC6-208	ENST00000554956	PDE4D	Q08499	809 aa		11.49	□□□□□ -0.57
PSMC6-208	ENST00000554956	PARP9	Q8IXQ6	854 aa		11.49	□□□□□ -0.57
PSMC6-208	ENST00000554956	CFH	P08603	1231 aa		11.48	□□□□□ -0.57
PSMC6-208	ENST00000554956	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.47	□□□□□ -0.57
PSMC6-208	ENST00000554956	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.46	□□□□□ -0.57
PSMC6-208	ENST00000554956	SULF1	Q8IWU6	871 aa		11.45	□□□□□ -0.58
PSMC6-208	ENST00000554956	CD46	P15529	392 aa		11.44	□□□□□ -0.58
PSMC6-208	ENST00000554956	NYAP1	Q6ZVC0	841 aa		11.44	□□□□□ -0.58
PSMC6-208	ENST00000554956	NECTIN2	Q92692	538 aa		11.43	□□□□□ -0.58
PSMC6-208	ENST00000554956	SSTR3	P32745	418 aa	Predicted RBP	11.41	□□□□□ -0.58
PSMC6-208	ENST00000554956	KMT5B	Q4FZB7	885 aa		11.41	□□□□□ -0.58
PSMC6-208	ENST00000554956	RSPH4A	Q5TD94	716 aa		11.41	□□□□□ -0.58
PSMC6-208	ENST00000554956	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.41	□□□□□ -0.58
PSMC6-208	ENST00000554956	MS4A1	P11836	297 aa		11.4	□□□□□ -0.58
PSMC6-208	ENST00000554956	GCGR	P47871	477 aa		11.4	□□□□□ -0.58
PSMC6-208	ENST00000554956	ACTN4	O43707	911 aa	Known RBP	11.38	□□□□□ -0.59
PSMC6-208	ENST00000554956	COPS2	P61201	443 aa		11.38	□□□□□ -0.59
PSMC6-208	ENST00000554956	MTR	Q99707	1265 aa		11.38	□□□□□ -0.59
PSMC6-208	ENST00000554956	PCDHB3	Q9Y5E6	796 aa		11.38	□□□□□ -0.59
PSMC6-208	ENST00000554956	FUT2	Q10981	343 aa		11.37	□□□□□ -0.59
PSMC6-208	ENST00000554956	PUS10	Q3MIT2	529 aa	Known RBP	11.37	□□□□□ -0.59
PSMC6-208	ENST00000554956	BLOC1S3	Q6QNY0	202 aa		11.37	□□□□□ -0.59
PSMC6-208	ENST00000554956	PRR14	Q9BWN1	585 aa		11.37	□□□□□ -0.59
PSMC6-208	ENST00000554956	TJAP1	Q5JTD0	557 aa		11.36	□□□□□ -0.59
PSMC6-208	ENST00000554956	PLA2G2E	Q9NZK7	142 aa		11.35	□□□□□ -0.59
PSMC6-208	ENST00000554956	ZNF516	Q92618	1163 aa		11.34	□□□□□ -0.59
PSMC6-208	ENST00000554956	BEGAIN	Q9BUH8	593 aa		11.34	□□□□□ -0.59
PSMC6-208	ENST00000554956	ITGBL1	O95965	494 aa	Predicted RBP	11.33	□□□□□ -0.6
PSMC6-208	ENST00000554956	KDM4C	Q9H3R0	1056 aa		11.33	□□□□□ -0.6
PSMC6-208	ENST00000554956	KDM4A	O75164	1064 aa		11.32	□□□□□ -0.6
PSMC6-208	ENST00000554956	NEUROD2	Q15784	382 aa		11.32	□□□□□ -0.6
PSMC6-208	ENST00000554956	HLA-C	Q95604	372 aa		11.32	□□□□□ -0.6
PSMC6-208	ENST00000554956	BRPF1	P55201	1214 aa	Predicted RBP	11.31	□□□□□ -0.6
PSMC6-208	ENST00000554956	IL21	Q9HBE4	155 aa		11.31	□□□□□ -0.6
PSMC6-208	ENST00000554956	TLL1	O43897	1013 aa		11.29	□□□□□ -0.6
PSMC6-208	ENST00000554956	ATP6V1A	P38606	617 aa		11.29	□□□□□ -0.6
PSMC6-208	ENST00000554956	KCNC4	Q03721	635 aa		11.29	□□□□□ -0.6
PSMC6-208	ENST00000554956	MORN1	Q5T089	497 aa		11.29	□□□□□ -0.6
PSMC6-208	ENST00000554956	NUTM1	Q86Y26	1132 aa		11.29	□□□□□ -0.6
PSMC6-208	ENST00000554956	GUCA2A	Q02747	115 aa		11.28	□□□□□ -0.6
PSMC6-208	ENST00000554956	NKX2-3	Q8TAU0	364 aa		11.28	□□□□□ -0.6
PSMC6-208	ENST00000554956	SPIRE2	Q8WWL2	714 aa		11.28	□□□□□ -0.6
PSMC6-208	ENST00000554956	HOXA2	O43364	376 aa		11.27	□□□□□ -0.61
PSMC6-208	ENST00000554956	ZPR1	O75312	459 aa		11.27	□□□□□ -0.61
PSMC6-208	ENST00000554956	FAM117A	Q9C073	453 aa		11.27	□□□□□ -0.61
PSMC6-208	ENST00000554956	SLC27A5	Q9Y2P5	690 aa		11.27	□□□□□ -0.61
PSMC6-208	ENST00000554956	NR1I2	O75469	434 aa		11.25	□□□□□ -0.61
PSMC6-208	ENST00000554956	USP46	P62068	366 aa		11.25	□□□□□ -0.61
PSMC6-208	ENST00000554956	SCUBE3	Q8IX30	993 aa		11.25	□□□□□ -0.61
PSMC6-208	ENST00000554956	TBC1D2	Q9BYX2	928 aa		11.25	□□□□□ -0.61
PSMC6-208	ENST00000554956	MOXD2P	A6NHM9	499 aa		11.23	□□□□□ -0.61
PSMC6-208	ENST00000554956	NDUFV2	P19404	249 aa		11.23	□□□□□ -0.61
PSMC6-208	ENST00000554956	GRIPAP1	Q4V328	841 aa		11.22	□□□□□ -0.61
PSMC6-208	ENST00000554956	PLEKHG3	A1L390	1219 aa		11.21	□□□□□ -0.61
PSMC6-208	ENST00000554956	IFFO2	Q5TF58	517 aa		11.21	□□□□□ -0.61
PSMC6-208	ENST00000554956	RNF19B	Q6ZMZ0	732 aa		11.21	□□□□□ -0.61
PSMC6-208	ENST00000554956	PCDHGC3	Q9UN70	934 aa		11.2	□□□□□ -0.62
PSMC6-208	ENST00000554956	FDX1	P10109	184 aa		11.19	□□□□□ -0.62
PSMC6-208	ENST00000554956	MYSM1	Q5VVJ2	828 aa		11.19	□□□□□ -0.62
PSMC6-208	ENST00000554956	THAP11	Q96EK4	314 aa		11.19	□□□□□ -0.62
PSMC6-208	ENST00000554956	SYMPK	Q92797	1274 aa	Known RBP	11.18	□□□□□ -0.62
PSMC6-208	ENST00000554956	DDRGK1	Q96HY6	314 aa		11.18	□□□□□ -0.62
PSMC6-208	ENST00000554956		A0A0G2JS52	829 aa		11.17	□□□□□ -0.62
PSMC6-208	ENST00000554956	ADH1B	P00325	375 aa		11.17	□□□□□ -0.62
PSMC6-208	ENST00000554956	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.17	□□□□□ -0.62
PSMC6-208	ENST00000554956	BRICD5	Q6PL45	260 aa		11.17	□□□□□ -0.62
PSMC6-208	ENST00000554956	SPSB2	Q99619	263 aa		11.17	□□□□□ -0.62
PSMC6-208	ENST00000554956	FMNL1	O95466	1100 aa	Predicted RBP	11.16	□□□□□ -0.62
PSMC6-208	ENST00000554956	IL27	Q8NEV9	243 aa		11.16	□□□□□ -0.62
PSMC6-208	ENST00000554956	LIMD1	Q9UGP4	676 aa		11.16	□□□□□ -0.62
PSMC6-208	ENST00000554956	DIXDC1	Q155Q3	683 aa		11.15	□□□□□ -0.62
PSMC6-208	ENST00000554956	RIC3	Q7Z5B4	369 aa		11.15	□□□□□ -0.62
PSMC6-208	ENST00000554956	PCDHB15	Q9Y5E8	787 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms