RNA–Protein interactions for RNA: ENST00000554685.2

SHOX2-206, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-206ENST00000554685 VGFO15240 615 aaPredicted RBP20.45■□□□□ 0.86
SHOX2-206ENST00000554685 HDGFP51858 240 aaKnown RBP20.45■□□□□ 0.86
SHOX2-206ENST00000554685 IFT172Q9UG01 1749 aa20.44■□□□□ 0.86
SHOX2-206ENST00000554685 NEXMIFQ5QGS0 1516 aa20.44■□□□□ 0.86
SHOX2-206ENST00000554685 ZFYVE9O95405 1425 aa20.44■□□□□ 0.86
SHOX2-206ENST00000554685 NBPF8Q3BBV2 869 aa20.43■□□□□ 0.86
SHOX2-206ENST00000554685 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.43■□□□□ 0.86
SHOX2-206ENST00000554685 PPLO60437 1756 aa20.43■□□□□ 0.86
SHOX2-206ENST00000554685 UBR1Q8IWV7 1749 aa20.42■□□□□ 0.86
SHOX2-206ENST00000554685 RALGAPBQ86X10 1494 aa20.42■□□□□ 0.86
SHOX2-206ENST00000554685 CEP170BQ9Y4F5 1589 aaPredicted RBP20.42■□□□□ 0.86
SHOX2-206ENST00000554685 KDM4FA0A1W2PPD8 638 aa20.41■□□□□ 0.86
SHOX2-206ENST00000554685 THEMISQ8N1K5 641 aaPredicted RBP20.41■□□□□ 0.86
SHOX2-206ENST00000554685 RIMS2Q9UQ26 1411 aa20.41■□□□□ 0.86
SHOX2-206ENST00000554685 NRXN1Q9ULB1 1477 aa20.41■□□□□ 0.86
SHOX2-206ENST00000554685 SETD1BQ9UPS6 1966 aaKnown RBP20.41■□□□□ 0.86
SHOX2-206ENST00000554685 ZNF142P52746 1687 aaPredicted RBP20.4■□□□□ 0.86
SHOX2-206ENST00000554685 MYO5BQ9ULV0 1848 aa20.39■□□□□ 0.86
SHOX2-206ENST00000554685 TMEM2Q9UHN6 1383 aa20.39■□□□□ 0.85
SHOX2-206ENST00000554685 ADGRF5Q8IZF2 1346 aa20.37■□□□□ 0.85
SHOX2-206ENST00000554685 PIK3C2GO75747 1445 aa20.36■□□□□ 0.85
SHOX2-206ENST00000554685 SLIT1O75093 1534 aa20.36■□□□□ 0.85
SHOX2-206ENST00000554685 ROCK2O75116 1388 aaKnown RBP20.35■□□□□ 0.85
SHOX2-206ENST00000554685 TRPM1Q7Z4N2 1603 aa20.35■□□□□ 0.85
SHOX2-206ENST00000554685 EID1Q9Y6B2 187 aa20.35■□□□□ 0.85
SHOX2-206ENST00000554685 KIAA1210Q9ULL0 1709 aa20.35■□□□□ 0.85
SHOX2-206ENST00000554685 ARHGAP23Q9P227 1491 aa20.35■□□□□ 0.85
SHOX2-206ENST00000554685 GPRASP1Q5JY77 1395 aa20.33■□□□□ 0.84
SHOX2-206ENST00000554685 LAMC1P11047 1609 aa20.32■□□□□ 0.84
SHOX2-206ENST00000554685 NUTM2DQ5VT03 806 aaPredicted RBP20.31■□□□□ 0.84
SHOX2-206ENST00000554685 CARD11Q9BXL7 1154 aa20.31■□□□□ 0.84
SHOX2-206ENST00000554685 C14orf93Q9H972 538 aaKnown RBP20.3■□□□□ 0.84
SHOX2-206ENST00000554685 MSH5O43196 834 aa20.29■□□□□ 0.84
SHOX2-206ENST00000554685 EIF4G2P78344 907 aaKnown RBP eCLIP20.29■□□□□ 0.847e-7■■□□□ 12.9
SHOX2-206ENST00000554685 TXNDC2Q86VQ3 553 aa20.29■□□□□ 0.84
SHOX2-206ENST00000554685 PLEKHG1Q9ULL1 1385 aa20.28■□□□□ 0.84
SHOX2-206ENST00000554685 SCAF11Q99590 1463 aaKnown RBP20.28■□□□□ 0.84
SHOX2-206ENST00000554685 SETBP1Q9Y6X0 1596 aa20.28■□□□□ 0.84
SHOX2-206ENST00000554685 CFAP70Q5T0N1 1121 aa20.27■□□□□ 0.84
SHOX2-206ENST00000554685 NBPF1Q3BBV0 1214 aa20.26■□□□□ 0.83
SHOX2-206ENST00000554685 ANKLE2Q86XL3 938 aa20.26■□□□□ 0.83
SHOX2-206ENST00000554685 USP47Q96K76 1375 aa20.24■□□□□ 0.83
SHOX2-206ENST00000554685 ZNF316A6NFI3 1004 aaPredicted RBP20.23■□□□□ 0.83
SHOX2-206ENST00000554685 LTKP29376 864 aa20.23■□□□□ 0.83
SHOX2-206ENST00000554685 ALKQ9UM73 1620 aa20.23■□□□□ 0.83
SHOX2-206ENST00000554685 EIF3AQ14152 1382 aaKnown RBP20.22■□□□□ 0.83
SHOX2-206ENST00000554685 BCANQ96GW7 911 aa20.22■□□□□ 0.83
SHOX2-206ENST00000554685 HSPA5P11021 654 aaKnown RBP20.21■□□□□ 0.83
SHOX2-206ENST00000554685 ADGRB1O14514 1584 aa20.21■□□□□ 0.83
SHOX2-206ENST00000554685 DIP2AQ14689 1571 aa20.2■□□□□ 0.82
SHOX2-206ENST00000554685 NRXN3Q9Y4C0 1643 aa20.18■□□□□ 0.82
SHOX2-206ENST00000554685 IQGAP1P46940 1657 aa20.17■□□□□ 0.82
SHOX2-206ENST00000554685 TBX22Q9Y458 520 aa20.16■□□□□ 0.82
SHOX2-206ENST00000554685 ADAMTS13Q76LX8 1427 aa20.16■□□□□ 0.82
SHOX2-206ENST00000554685 LMTK3Q96Q04 1460 aa20.16■□□□□ 0.82
SHOX2-206ENST00000554685 SLC24A1O60721 1099 aa20.15■□□□□ 0.82
SHOX2-206ENST00000554685 MED14O60244 1454 aa20.15■□□□□ 0.82
SHOX2-206ENST00000554685 ASXL1Q8IXJ9 1541 aa20.14■□□□□ 0.81
SHOX2-206ENST00000554685 NPHP4O75161 1426 aaPredicted RBP20.14■□□□□ 0.81
SHOX2-206ENST00000554685 TMEM132EQ6IEE7 984 aa20.14■□□□□ 0.81
SHOX2-206ENST00000554685 SETD1AO15047 1707 aaKnown RBP20.13■□□□□ 0.81
SHOX2-206ENST00000554685 POLR1AO95602 1720 aaPredicted RBP20.13■□□□□ 0.81
SHOX2-206ENST00000554685 YTHDC2Q9H6S0 1430 aaKnown RBP20.13■□□□□ 0.81
SHOX2-206ENST00000554685 LRPPRCP42704 1394 aaKnown RBP20.13■□□□□ 0.81
SHOX2-206ENST00000554685 PIK3R4Q99570 1358 aa20.12■□□□□ 0.81
SHOX2-206ENST00000554685 ST20-MTHFSA0A0A6YYL1 179 aa20.12■□□□□ 0.81
SHOX2-206ENST00000554685 METP08581 1390 aa20.1■□□□□ 0.81
SHOX2-206ENST00000554685 TRAK1Q9UPV9 953 aa20.1■□□□□ 0.81
SHOX2-206ENST00000554685 ABCC11Q96J66 1382 aa20.09■□□□□ 0.81
SHOX2-206ENST00000554685 DLC1Q96QB1 1528 aa20.09■□□□□ 0.81
SHOX2-206ENST00000554685 SLC26A8Q96RN1 970 aa20.09■□□□□ 0.81
SHOX2-206ENST00000554685 HIRIP3Q9BW71 556 aaPredicted RBP20.09■□□□□ 0.81
SHOX2-206ENST00000554685 CENPJQ9HC77 1338 aaPredicted RBP20.08■□□□□ 0.81
SHOX2-206ENST00000554685 NCKAP5LQ9HCH0 1330 aa20.08■□□□□ 0.81
SHOX2-206ENST00000554685 SBNO2Q9Y2G9 1366 aa20.08■□□□□ 0.8
SHOX2-206ENST00000554685 HSPA2P54652 639 aa20.07■□□□□ 0.8
SHOX2-206ENST00000554685 STK26Q9P289 416 aa20.07■□□□□ 0.8
SHOX2-206ENST00000554685 TECPR2O15040 1411 aa20.07■□□□□ 0.8
SHOX2-206ENST00000554685 SIRT1Q96EB6 747 aa20.06■□□□□ 0.8
SHOX2-206ENST00000554685 KNDC1Q76NI1 1749 aa20.05■□□□□ 0.8
SHOX2-206ENST00000554685 TMF1P82094 1093 aa20.04■□□□□ 0.8
SHOX2-206ENST00000554685 ARHGEF28Q8N1W1 1705 aaKnown RBP20.04■□□□□ 0.8
SHOX2-206ENST00000554685 FAM135BQ49AJ0 1406 aa20.03■□□□□ 0.8
SHOX2-206ENST00000554685 CPS1P31327 1500 aa20.03■□□□□ 0.8
SHOX2-206ENST00000554685 CDCA8Q53HL2 280 aa20.03■□□□□ 0.8
SHOX2-206ENST00000554685 TESK2Q96S53 571 aa20.03■□□□□ 0.8
SHOX2-206ENST00000554685 POGKQ9P215 609 aa20.03■□□□□ 0.8
SHOX2-206ENST00000554685 PTCH1Q13635 1447 aa20.01■□□□□ 0.79
SHOX2-206ENST00000554685 PRAM1Q96QH2 718 aa20■□□□□ 0.79
SHOX2-206ENST00000554685 AMOTL2Q9Y2J4 779 aa20■□□□□ 0.79
SHOX2-206ENST00000554685 PTPRUQ92729 1446 aa20■□□□□ 0.79
SHOX2-206ENST00000554685 CCDC7Q96M83 1385 aa19.99■□□□□ 0.79
SHOX2-206ENST00000554685 QRICH2Q9H0J4 1663 aa19.99■□□□□ 0.79
SHOX2-206ENST00000554685 DMRT2Q9Y5R5 561 aa19.98■□□□□ 0.79
SHOX2-206ENST00000554685 XRN1Q8IZH2 1706 aaKnown RBP19.98■□□□□ 0.79
SHOX2-206ENST00000554685 KIF7Q2M1P5 1343 aa19.97■□□□□ 0.79
SHOX2-206ENST00000554685 WASHC2AQ641Q2 1341 aa19.97■□□□□ 0.79
SHOX2-206ENST00000554685 EVC2Q86UK5 1308 aa19.96■□□□□ 0.79
SHOX2-206ENST00000554685 KCNA6P17658 529 aa19.95■□□□□ 0.78
SHOX2-206ENST00000554685 STRCQ7RTU9 1775 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms