RNA–Protein interactions for RNA: ENST00000554659.5

VTI1B-204, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTI1B, Length 5,351 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-204ENST00000554659 FAM184AQ8NB25 1140 aa17.1■□□□□ 0.33
VTI1B-204ENST00000554659 PRM3Q9NNZ6 103 aa17.1■□□□□ 0.33
VTI1B-204ENST00000554659 LRRC9Q6ZRR7 1453 aa17.09■□□□□ 0.33
VTI1B-204ENST00000554659 RUFY2Q8WXA3 655 aa17.09■□□□□ 0.33
VTI1B-204ENST00000554659 DIAPH1O60610 1272 aaKnown RBP17.09■□□□□ 0.33
VTI1B-204ENST00000554659 IGF1RP08069 1367 aa17.09■□□□□ 0.33
VTI1B-204ENST00000554659 ZNF771Q7L3S4 317 aaPredicted RBP17.08■□□□□ 0.33
VTI1B-204ENST00000554659 DIAPH3Q9NSV4 1193 aa17.08■□□□□ 0.33
VTI1B-204ENST00000554659 BECN2A8MW95 431 aa17.08■□□□□ 0.33
VTI1B-204ENST00000554659 CEP89Q96ST8 783 aa17.08■□□□□ 0.32
VTI1B-204ENST00000554659 LTV1Q96GA3 475 aaPredicted RBP17.07■□□□□ 0.32
VTI1B-204ENST00000554659 NUCB2P80303 420 aa17.07■□□□□ 0.32
VTI1B-204ENST00000554659 FOXD4L6Q3SYB3 417 aaPredicted RBP17.06■□□□□ 0.32
VTI1B-204ENST00000554659 FOXD4L3Q6VB84 417 aaPredicted RBP17.06■□□□□ 0.32
VTI1B-204ENST00000554659 PES1O00541 588 aaKnown RBP17.06■□□□□ 0.32
VTI1B-204ENST00000554659 RIPK4P57078 832 aa17.06■□□□□ 0.32
VTI1B-204ENST00000554659 NFKBIBQ15653 356 aa17.06■□□□□ 0.32
VTI1B-204ENST00000554659 WASHC2AQ641Q2 1341 aa17.06■□□□□ 0.32
VTI1B-204ENST00000554659 ZKSCAN1P17029 563 aaPredicted RBP17.06■□□□□ 0.32
VTI1B-204ENST00000554659 PTPRGP23470 1445 aa17.05■□□□□ 0.32
VTI1B-204ENST00000554659 C22orf23Q9BZE7 217 aa17.05■□□□□ 0.32
VTI1B-204ENST00000554659 INTS3Q68E01 1043 aaKnown RBP17.05■□□□□ 0.32
VTI1B-204ENST00000554659 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.04■□□□□ 0.32
VTI1B-204ENST00000554659 TOMM22Q9NS69 142 aa17.04■□□□□ 0.32
VTI1B-204ENST00000554659 FAM13BQ9NYF5 915 aa17.04■□□□□ 0.32
VTI1B-204ENST00000554659 ZNF592Q92610 1267 aa17.03■□□□□ 0.32
VTI1B-204ENST00000554659 GPS2Q13227 327 aa17.03■□□□□ 0.32
VTI1B-204ENST00000554659 FYCO1Q9BQS8 1478 aa17.02■□□□□ 0.32
VTI1B-204ENST00000554659 LRRFIP1Q32MZ4 808 aaKnown RBP17.02■□□□□ 0.32
VTI1B-204ENST00000554659 FGD5Q6ZNL6 1462 aa17.02■□□□□ 0.31
VTI1B-204ENST00000554659 TRHP20396 242 aaPredicted RBP17.02■□□□□ 0.31
VTI1B-204ENST00000554659 RRBP1Q9P2E9 1410 aaKnown RBP17.02■□□□□ 0.31
VTI1B-204ENST00000554659 MINK1Q8N4C8 1332 aaPredicted RBP17.01■□□□□ 0.31
VTI1B-204ENST00000554659 TPD52L1Q16890 204 aaPredicted RBP17.01■□□□□ 0.31
VTI1B-204ENST00000554659 TSR1Q2NL82 804 aaKnown RBP17.01■□□□□ 0.31
VTI1B-204ENST00000554659 PATL2C9JE40 543 aaKnown RBP17.01■□□□□ 0.31
VTI1B-204ENST00000554659 GNAI1P63096 354 aa17.01■□□□□ 0.31
VTI1B-204ENST00000554659 CASKIN1Q8WXD9 1431 aa17.01■□□□□ 0.31
VTI1B-204ENST00000554659 C1orf141Q5JVX7 400 aa17.01■□□□□ 0.31
VTI1B-204ENST00000554659 NUTM2FA1L443 756 aa17■□□□□ 0.31
VTI1B-204ENST00000554659 FAM43AQ8N2R8 423 aa17■□□□□ 0.31
VTI1B-204ENST00000554659 MRE11P49959 708 aa17■□□□□ 0.31
VTI1B-204ENST00000554659 TEFQ10587 303 aa17■□□□□ 0.31
VTI1B-204ENST00000554659 TPM1P09493 284 aa16.99■□□□□ 0.31
VTI1B-204ENST00000554659 ANO2Q9NQ90 1003 aa16.99■□□□□ 0.31
VTI1B-204ENST00000554659 NEXNQ0ZGT2 675 aa16.99■□□□□ 0.31
VTI1B-204ENST00000554659 CPLX2Q6PUV4 134 aaKnown RBP16.99■□□□□ 0.31
VTI1B-204ENST00000554659 GAPVD1Q14C86 1478 aa16.99■□□□□ 0.31
VTI1B-204ENST00000554659 RNF20Q5VTR2 975 aa16.99■□□□□ 0.31
VTI1B-204ENST00000554659 NCOA2Q15596 1464 aa16.99■□□□□ 0.31
VTI1B-204ENST00000554659 ANKRD50Q9ULJ7 1429 aa16.99■□□□□ 0.31
VTI1B-204ENST00000554659 LNPKQ9C0E8 428 aa16.98■□□□□ 0.31
VTI1B-204ENST00000554659 MCTP1Q6DN14 999 aa16.98■□□□□ 0.31
VTI1B-204ENST00000554659 C9orf78Q9NZ63 289 aaPredicted RBP16.98■□□□□ 0.31
VTI1B-204ENST00000554659 IFIT2P09913 472 aaKnown RBP16.98■□□□□ 0.31
VTI1B-204ENST00000554659 PANK1Q8TE04 598 aa16.98■□□□□ 0.31
VTI1B-204ENST00000554659 MARCH6O60337 910 aa16.97■□□□□ 0.31
VTI1B-204ENST00000554659 CDC45O75419 566 aa16.97■□□□□ 0.31
VTI1B-204ENST00000554659 TMX4Q9H1E5 349 aaPredicted RBP16.97■□□□□ 0.31
VTI1B-204ENST00000554659 ANO8Q9HCE9 1232 aaPredicted RBP16.97■□□□□ 0.31
VTI1B-204ENST00000554659 AKAP17AQ02040 695 aaKnown RBP16.96■□□□□ 0.31
VTI1B-204ENST00000554659 CCDC70Q6NSX1 233 aa16.96■□□□□ 0.31
VTI1B-204ENST00000554659 ADAMTS8Q9UP79 889 aa16.96■□□□□ 0.31
VTI1B-204ENST00000554659 ERICH3Q5RHP9 1530 aa16.96■□□□□ 0.31
VTI1B-204ENST00000554659 SYNE3Q6ZMZ3 975 aa16.96■□□□□ 0.31
VTI1B-204ENST00000554659 SMC3Q9UQE7 1217 aa16.96■□□□□ 0.3
VTI1B-204ENST00000554659 HSP90AB4PQ58FF6 505 aa16.95■□□□□ 0.3
VTI1B-204ENST00000554659 BICD2Q8TD16 824 aa16.95■□□□□ 0.3
VTI1B-204ENST00000554659 ZNF644Q9H582 1327 aaPredicted RBP16.95■□□□□ 0.3
VTI1B-204ENST00000554659 FKBP5Q13451 457 aaPredicted RBP16.94■□□□□ 0.3
VTI1B-204ENST00000554659 TPM2P07951 284 aa16.94■□□□□ 0.3
VTI1B-204ENST00000554659 FRAT2O75474 233 aaPredicted RBP16.94■□□□□ 0.3
VTI1B-204ENST00000554659 TRIM29Q14134 588 aa16.93■□□□□ 0.3
VTI1B-204ENST00000554659 TEX35Q5T0J7 233 aa16.93■□□□□ 0.3
VTI1B-204ENST00000554659 EIF2S2P20042 333 aaKnown RBP16.93■□□□□ 0.3
VTI1B-204ENST00000554659 DDX58O95786 925 aaKnown RBP16.92■□□□□ 0.3
VTI1B-204ENST00000554659 VPS53Q5VIR6 699 aa16.92■□□□□ 0.3
VTI1B-204ENST00000554659 CCDC9Q9Y3X0 531 aaKnown RBP16.92■□□□□ 0.3
VTI1B-204ENST00000554659 ERC2O15083 957 aa16.92■□□□□ 0.3
VTI1B-204ENST00000554659 VPS37CA5D8V6 355 aaPredicted RBP16.92■□□□□ 0.3
VTI1B-204ENST00000554659 NASPP49321 788 aaPredicted RBP16.92■□□□□ 0.3
VTI1B-204ENST00000554659 HOMER1Q86YM7 354 aa16.91■□□□□ 0.3
VTI1B-204ENST00000554659 CPLX1O14810 134 aa16.91■□□□□ 0.3
VTI1B-204ENST00000554659 SASS6Q6UVJ0 657 aa16.91■□□□□ 0.3
VTI1B-204ENST00000554659 G3BP1Q13283 466 aaKnown RBP eCLIP16.91■□□□□ 0.3
VTI1B-204ENST00000554659 PDE3AQ14432 1141 aa16.91■□□□□ 0.3
VTI1B-204ENST00000554659 CDCA7LQ96GN5 454 aa16.91■□□□□ 0.3
VTI1B-204ENST00000554659 CCDC39Q9UFE4 941 aa16.91■□□□□ 0.3
VTI1B-204ENST00000554659 HOOK1Q9UJC3 728 aaKnown RBP16.91■□□□□ 0.3
VTI1B-204ENST00000554659 TTC5Q8N0Z6 440 aa16.9■□□□□ 0.3
VTI1B-204ENST00000554659 TRAK2O60296 914 aa16.9■□□□□ 0.3
VTI1B-204ENST00000554659 PPP2R1AP30153 589 aa16.9■□□□□ 0.3
VTI1B-204ENST00000554659 IPO7O95373 1038 aaKnown RBP16.89■□□□□ 0.29
VTI1B-204ENST00000554659 ARAP1Q96P48 1450 aa16.89■□□□□ 0.29
VTI1B-204ENST00000554659 CALRP27797 417 aaKnown RBP16.89■□□□□ 0.29
VTI1B-204ENST00000554659 RAD54L2Q9Y4B4 1467 aa16.89■□□□□ 0.29
VTI1B-204ENST00000554659 GTF2E1P29083 439 aaPredicted RBP16.89■□□□□ 0.29
VTI1B-204ENST00000554659 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.89■□□□□ 0.29
VTI1B-204ENST00000554659 ANKRD20A12PQ8NF67 263 aa16.89■□□□□ 0.29
VTI1B-204ENST00000554659 TSPYL4Q9UJ04 414 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms