RNA–Protein interactions for RNA: ENST00000554290.1

CPSF2-203, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

TSL 4

Gene CPSF2, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-203ENST00000554290 CHGAP10645 457 aaKnown RBP28.62■■■□□ 2.17
CPSF2-203ENST00000554290 PROSER2Q86WR7 435 aaPredicted RBP28.62■■■□□ 2.17
CPSF2-203ENST00000554290 TMEM94Q12767 1356 aa28.61■■■□□ 2.17
CPSF2-203ENST00000554290 RIMS2Q9UQ26 1411 aa28.6■■■□□ 2.17
CPSF2-203ENST00000554290 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.6■■■□□ 2.17
CPSF2-203ENST00000554290 SENP3Q9H4L4 574 aaPredicted RBP28.6■■■□□ 2.17
CPSF2-203ENST00000554290 ZFYVE9O95405 1425 aa28.6■■■□□ 2.17
CPSF2-203ENST00000554290 IQGAP3Q86VI3 1631 aa28.59■■■□□ 2.17
CPSF2-203ENST00000554290 PLEKHG1Q9ULL1 1385 aa28.59■■■□□ 2.17
CPSF2-203ENST00000554290 MED1Q15648 1581 aaPredicted RBP28.58■■■□□ 2.17
CPSF2-203ENST00000554290 TMEM131LA2VDJ0 1609 aa28.58■■■□□ 2.17
CPSF2-203ENST00000554290 E9PCH4 1651 aa28.57■■■□□ 2.16
CPSF2-203ENST00000554290 XIRP1Q702N8 1843 aaKnown RBP28.56■■■□□ 2.16
CPSF2-203ENST00000554290 NKTRP30414 1462 aaKnown RBP28.54■■■□□ 2.16
CPSF2-203ENST00000554290 TBX22Q9Y458 520 aa28.52■■■□□ 2.16
CPSF2-203ENST00000554290 FAM135BQ49AJ0 1406 aa28.52■■■□□ 2.16
CPSF2-203ENST00000554290 NWD1Q149M9 1564 aa28.51■■■□□ 2.15
CPSF2-203ENST00000554290 MYO5BQ9ULV0 1848 aa28.51■■■□□ 2.15
CPSF2-203ENST00000554290 RBM33Q96EV2 1170 aaKnown RBP28.51■■■□□ 2.15
CPSF2-203ENST00000554290 PHF23Q9BUL5 403 aaPredicted RBP28.49■■■□□ 2.15
CPSF2-203ENST00000554290 RRBP1Q9P2E9 1410 aaKnown RBP28.47■■■□□ 2.15
CPSF2-203ENST00000554290 NUTM2DQ5VT03 806 aaPredicted RBP28.47■■■□□ 2.15
CPSF2-203ENST00000554290 MSH6P52701 1360 aa28.47■■■□□ 2.15
CPSF2-203ENST00000554290 CHD2O14647 1828 aaKnown RBP28.41■■■□□ 2.14
CPSF2-203ENST00000554290 ADAMTS13Q76LX8 1427 aa28.4■■■□□ 2.14
CPSF2-203ENST00000554290 PIK3R4Q99570 1358 aa28.39■■■□□ 2.14
CPSF2-203ENST00000554290 SLAIN2Q9P270 581 aa28.39■■■□□ 2.14
CPSF2-203ENST00000554290 NCOA3Q9Y6Q9 1424 aa28.39■■■□□ 2.14
CPSF2-203ENST00000554290 DIP2AQ14689 1571 aa28.38■■■□□ 2.13
CPSF2-203ENST00000554290 C14orf37Q86TY3 774 aa28.37■■■□□ 2.13
CPSF2-203ENST00000554290 NAIPQ13075 1403 aa28.36■■■□□ 2.13
CPSF2-203ENST00000554290 ZNF326Q5BKZ1 582 aaKnown RBP28.36■■■□□ 2.13
CPSF2-203ENST00000554290 ROBO1Q9Y6N7 1651 aa28.35■■■□□ 2.13
CPSF2-203ENST00000554290 SPHKAPQ2M3C7 1700 aa28.34■■■□□ 2.13
CPSF2-203ENST00000554290 TRPM2O94759 1503 aa28.32■■■□□ 2.12
CPSF2-203ENST00000554290 AMOTL2Q9Y2J4 779 aa28.31■■■□□ 2.12
CPSF2-203ENST00000554290 TRIM52Q96A61 297 aa28.3■■■□□ 2.12
CPSF2-203ENST00000554290 C19orf44Q9H6X5 657 aa28.3■■■□□ 2.12
CPSF2-203ENST00000554290 CADPS2Q86UW7 1296 aa28.29■■■□□ 2.12
CPSF2-203ENST00000554290 ATF3P18847 181 aa28.27■■■□□ 2.12
CPSF2-203ENST00000554290 HFM1A2PYH4 1435 aa28.26■■■□□ 2.12
CPSF2-203ENST00000554290 PTPRUQ92729 1446 aa28.24■■■□□ 2.11
CPSF2-203ENST00000554290 SETBP1Q9Y6X0 1596 aa28.24■■■□□ 2.11
CPSF2-203ENST00000554290 CLTCL1P53675 1640 aa28.21■■■□□ 2.11
CPSF2-203ENST00000554290 SLC4A1APQ9BWU0 796 aaKnown RBP28.21■■■□□ 2.11
CPSF2-203ENST00000554290 RGS17Q9UGC6 210 aaPredicted RBP28.2■■■□□ 2.1
CPSF2-203ENST00000554290 JCADQ9P266 1359 aa28.19■■■□□ 2.1
CPSF2-203ENST00000554290 NRXN3Q9Y4C0 1643 aa28.18■■■□□ 2.1
CPSF2-203ENST00000554290 PHLPP1O60346 1717 aa28.18■■■□□ 2.1
CPSF2-203ENST00000554290 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.18■■■□□ 2.1
CPSF2-203ENST00000554290 METP08581 1390 aa28.17■■■□□ 2.1
CPSF2-203ENST00000554290 NEXMIFQ5QGS0 1516 aa28.16■■■□□ 2.1
CPSF2-203ENST00000554290 VGFO15240 615 aaPredicted RBP28.15■■■□□ 2.1
CPSF2-203ENST00000554290 KIF1BO60333 1816 aa28.14■■■□□ 2.1
CPSF2-203ENST00000554290 DCCP43146 1447 aa28.14■■■□□ 2.1
CPSF2-203ENST00000554290 XRN1Q8IZH2 1706 aaKnown RBP28.13■■■□□ 2.09
CPSF2-203ENST00000554290 RPGRIP1LQ68CZ1 1315 aa28.12■■■□□ 2.09
CPSF2-203ENST00000554290 BRINP3Q76B58 766 aa28.09■■■□□ 2.09
CPSF2-203ENST00000554290 COL16A1Q07092 1604 aaPredicted RBP28.09■■■□□ 2.09
CPSF2-203ENST00000554290 SPATA31A6Q5VVP1 1343 aa28.07■■■□□ 2.08
CPSF2-203ENST00000554290 AHDC1Q5TGY3 1603 aaPredicted RBP28.07■■■□□ 2.08
CPSF2-203ENST00000554290 POTEAQ6S8J7 498 aa28.06■■■□□ 2.08
CPSF2-203ENST00000554290 ADGRL3Q9HAR2 1447 aa28.03■■■□□ 2.08
CPSF2-203ENST00000554290 FOXD1Q16676 465 aa28.02■■■□□ 2.08
CPSF2-203ENST00000554290 MST1RQ04912 1400 aa28.01■■■□□ 2.08
CPSF2-203ENST00000554290 MEX3CQ5U5Q3 659 aaKnown RBP28■■■□□ 2.07
CPSF2-203ENST00000554290 ASXL1Q8IXJ9 1541 aa27.98■■■□□ 2.07
CPSF2-203ENST00000554290 MPHOSPH9Q99550 1183 aa27.98■■■□□ 2.07
CPSF2-203ENST00000554290 CCDC144AA2RUR9 1427 aa27.98■■■□□ 2.07
CPSF2-203ENST00000554290 ACIN1Q9UKV3 1341 aaKnown RBP27.97■■■□□ 2.07
CPSF2-203ENST00000554290 PTCH1Q13635 1447 aa27.97■■■□□ 2.07
CPSF2-203ENST00000554290 LRRC59Q96AG4 307 aaKnown RBP27.94■■■□□ 2.06
CPSF2-203ENST00000554290 SHPRHQ149N8 1683 aa27.94■■■□□ 2.06
CPSF2-203ENST00000554290 LRP6O75581 1613 aa27.93■■■□□ 2.06
CPSF2-203ENST00000554290 RGL3Q3MIN7 710 aa27.93■■■□□ 2.06
CPSF2-203ENST00000554290 ROBO2Q9HCK4 1378 aa27.93■■■□□ 2.06
CPSF2-203ENST00000554290 SETD5Q9C0A6 1442 aa27.92■■■□□ 2.06
CPSF2-203ENST00000554290 PPLO60437 1756 aa27.92■■■□□ 2.06
CPSF2-203ENST00000554290 PRAG1Q86YV5 1406 aa27.92■■■□□ 2.06
CPSF2-203ENST00000554290 ZNF772Q68DY9 489 aaPredicted RBP27.91■■■□□ 2.06
CPSF2-203ENST00000554290 SETD1AO15047 1707 aaKnown RBP27.91■■■□□ 2.06
CPSF2-203ENST00000554290 NALCNQ8IZF0 1738 aa27.91■■■□□ 2.06
CPSF2-203ENST00000554290 NUTM2BA6NNL0 878 aaPredicted RBP27.9■■■□□ 2.06
CPSF2-203ENST00000554290 NUTM2EB1AL46 878 aaPredicted RBP27.9■■■□□ 2.06
CPSF2-203ENST00000554290 NUTM2AQ8IVF1 878 aaPredicted RBP27.9■■■□□ 2.06
CPSF2-203ENST00000554290 C1orf167Q5SNV9 1468 aa27.89■■■□□ 2.05
CPSF2-203ENST00000554290 ANKRD30BQ9BXX2 1392 aa27.88■■■□□ 2.05
CPSF2-203ENST00000554290 ADGRF5Q8IZF2 1346 aa27.88■■■□□ 2.05
CPSF2-203ENST00000554290 SPATA31E1Q6ZUB1 1445 aa27.87■■■□□ 2.05
CPSF2-203ENST00000554290 NHSL1Q5SYE7 1610 aa27.87■■■□□ 2.05
CPSF2-203ENST00000554290 DDX17Q92841 729 aaKnown RBP27.86■■■□□ 2.05
CPSF2-203ENST00000554290 ORAI2Q96SN7 254 aa27.81■■■□□ 2.04
CPSF2-203ENST00000554290 STK26Q9P289 416 aa27.8■■■□□ 2.04
CPSF2-203ENST00000554290 PNPLA6Q8IY17 1366 aa27.79■■■□□ 2.04
CPSF2-203ENST00000554290 LRPPRCP42704 1394 aaKnown RBP27.76■■■□□ 2.03
CPSF2-203ENST00000554290 AFF2P51816 1311 aa27.75■■■□□ 2.03
CPSF2-203ENST00000554290 SOS2Q07890 1332 aaPredicted RBP27.75■■■□□ 2.03
CPSF2-203ENST00000554290 RXRBP28702 533 aa27.75■■■□□ 2.03
CPSF2-203ENST00000554290 TMEM132EQ6IEE7 984 aa27.75■■■□□ 2.03
CPSF2-203ENST00000554290 TECPR2O15040 1411 aa27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms