RNA–Protein interactions for RNA: ENST00000553998.5

ABCD4-220, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3

Gene ABCD4, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-220ENST00000553998 ZNF772Q68DY9 489 aaPredicted RBP12.1□□□□□ -0.47
ABCD4-220ENST00000553998 HDGFP51858 240 aaKnown RBP12.09□□□□□ -0.47
ABCD4-220ENST00000553998 ZFYVE9O95405 1425 aa12.09□□□□□ -0.47
ABCD4-220ENST00000553998 DAPK1P53355 1430 aa12.09□□□□□ -0.47
ABCD4-220ENST00000553998 ANKRD30AQ9BXX3 1397 aa12.07□□□□□ -0.48
ABCD4-220ENST00000553998 ADGRB3O60242 1522 aa12.07□□□□□ -0.48
ABCD4-220ENST00000553998 CFAP65Q6ZU64 1925 aaKnown RBP12.06□□□□□ -0.48
ABCD4-220ENST00000553998 C19orf44Q9H6X5 657 aa12.06□□□□□ -0.48
ABCD4-220ENST00000553998 LRP6O75581 1613 aa12.06□□□□□ -0.48
ABCD4-220ENST00000553998 RPRD2Q5VT52 1461 aaKnown RBP12.06□□□□□ -0.48
ABCD4-220ENST00000553998 SRCAPQ6ZRS2 3230 aa12.05□□□□□ -0.48
ABCD4-220ENST00000553998 COL16A1Q07092 1604 aaPredicted RBP12.05□□□□□ -0.48
ABCD4-220ENST00000553998 CADPS2Q86UW7 1296 aa12.05□□□□□ -0.48
ABCD4-220ENST00000553998 BCANQ96GW7 911 aa12.05□□□□□ -0.48
ABCD4-220ENST00000553998 PIK3R4Q99570 1358 aa12.05□□□□□ -0.48
ABCD4-220ENST00000553998 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.04□□□□□ -0.48
ABCD4-220ENST00000553998 RIMS2Q9UQ26 1411 aa12.03□□□□□ -0.48
ABCD4-220ENST00000553998 PHLPP1O60346 1717 aa12.03□□□□□ -0.48
ABCD4-220ENST00000553998 CDK12Q9NYV4 1490 aaPredicted RBP12.03□□□□□ -0.48
ABCD4-220ENST00000553998 RXRBP28702 533 aa12.03□□□□□ -0.48
ABCD4-220ENST00000553998 CHIC2Q9UKJ5 165 aa12.03□□□□□ -0.48
ABCD4-220ENST00000553998 ADAMTS13Q76LX8 1427 aa12.03□□□□□ -0.48
ABCD4-220ENST00000553998 AHDC1Q5TGY3 1603 aaPredicted RBP12.02□□□□□ -0.49
ABCD4-220ENST00000553998 PTPN23Q9H3S7 1636 aa12.02□□□□□ -0.49
ABCD4-220ENST00000553998 CROCC2H7BZ55 1655 aa12.02□□□□□ -0.49
ABCD4-220ENST00000553998 ADGRL2O95490 1459 aa12.02□□□□□ -0.49
ABCD4-220ENST00000553998 ATF3P18847 181 aa12.01□□□□□ -0.49
ABCD4-220ENST00000553998 MEX3CQ5U5Q3 659 aaKnown RBP12.01□□□□□ -0.49
ABCD4-220ENST00000553998 BRINP3Q76B58 766 aa12.01□□□□□ -0.49
ABCD4-220ENST00000553998 TRIM52Q96A61 297 aa12.01□□□□□ -0.49
ABCD4-220ENST00000553998 SETD1AO15047 1707 aaKnown RBP12□□□□□ -0.49
ABCD4-220ENST00000553998 CHD2O14647 1828 aaKnown RBP12□□□□□ -0.49
ABCD4-220ENST00000553998 PPP1R15AO75807 674 aaPredicted RBP12□□□□□ -0.49
ABCD4-220ENST00000553998 SETD5Q9C0A6 1442 aa11.98□□□□□ -0.49
ABCD4-220ENST00000553998 ANKRD50Q9ULJ7 1429 aa11.98□□□□□ -0.49
ABCD4-220ENST00000553998 C14orf37Q86TY3 774 aa11.98□□□□□ -0.49
ABCD4-220ENST00000553998 AMOTL2Q9Y2J4 779 aa11.98□□□□□ -0.49
ABCD4-220ENST00000553998 TMEM131LA2VDJ0 1609 aa11.97□□□□□ -0.49
ABCD4-220ENST00000553998 DIP2AQ14689 1571 aa11.97□□□□□ -0.49
ABCD4-220ENST00000553998 DCCP43146 1447 aa11.97□□□□□ -0.49
ABCD4-220ENST00000553998 SHPRHQ149N8 1683 aa11.97□□□□□ -0.49
ABCD4-220ENST00000553998 AFF2P51816 1311 aa11.96□□□□□ -0.49
ABCD4-220ENST00000553998 LRRC59Q96AG4 307 aaKnown RBP11.96□□□□□ -0.49
ABCD4-220ENST00000553998 PTPRUQ92729 1446 aa11.95□□□□□ -0.5
ABCD4-220ENST00000553998 RBM6P78332 1123 aaKnown RBP11.95□□□□□ -0.5
ABCD4-220ENST00000553998 APLP2Q06481 763 aa11.95□□□□□ -0.5
ABCD4-220ENST00000553998 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.94□□□□□ -0.5
ABCD4-220ENST00000553998 NUTM2BA6NNL0 878 aaPredicted RBP11.94□□□□□ -0.5
ABCD4-220ENST00000553998 NUTM2EB1AL46 878 aaPredicted RBP11.94□□□□□ -0.5
ABCD4-220ENST00000553998 NUTM2AQ8IVF1 878 aaPredicted RBP11.94□□□□□ -0.5
ABCD4-220ENST00000553998 QTRT2Q9H974 415 aaKnown RBP11.94□□□□□ -0.5
ABCD4-220ENST00000553998 NUTM2DQ5VT03 806 aaPredicted RBP11.93□□□□□ -0.5
ABCD4-220ENST00000553998 MST1RQ04912 1400 aa11.93□□□□□ -0.5
ABCD4-220ENST00000553998 CHGAP10645 457 aaKnown RBP11.92□□□□□ -0.5
ABCD4-220ENST00000553998 TRPM2O94759 1503 aa11.91□□□□□ -0.5
ABCD4-220ENST00000553998 ASXL1Q8IXJ9 1541 aa11.91□□□□□ -0.5
ABCD4-220ENST00000553998 RGS12O14924 1447 aa11.91□□□□□ -0.5
ABCD4-220ENST00000553998 PNPLA6Q8IY17 1366 aa11.9□□□□□ -0.5
ABCD4-220ENST00000553998 NGLY1Q96IV0 654 aa11.89□□□□□ -0.51
ABCD4-220ENST00000553998 C8orf37Q96NL8 207 aa11.89□□□□□ -0.51
ABCD4-220ENST00000553998 GCC2Q8IWJ2 1684 aa11.89□□□□□ -0.51
ABCD4-220ENST00000553998 FAM50AQ14320 339 aaKnown RBP11.88□□□□□ -0.51
ABCD4-220ENST00000553998 METP08581 1390 aa11.88□□□□□ -0.51
ABCD4-220ENST00000553998 ROCK1Q13464 1354 aa11.88□□□□□ -0.51
ABCD4-220ENST00000553998 FNBP4Q8N3X1 1017 aaPredicted RBP11.87□□□□□ -0.51
ABCD4-220ENST00000553998 UNC13BO14795 1591 aa11.87□□□□□ -0.51
ABCD4-220ENST00000553998 SETBP1Q9Y6X0 1596 aa11.87□□□□□ -0.51
ABCD4-220ENST00000553998 ADGRL3Q9HAR2 1447 aa11.86□□□□□ -0.51
ABCD4-220ENST00000553998 MYO5BQ9ULV0 1848 aa11.86□□□□□ -0.51
ABCD4-220ENST00000553998 DDX17Q92841 729 aaKnown RBP11.86□□□□□ -0.51
ABCD4-220ENST00000553998 XRN1Q8IZH2 1706 aaKnown RBP11.86□□□□□ -0.51
ABCD4-220ENST00000553998 NHSL1Q5SYE7 1610 aa11.86□□□□□ -0.51
ABCD4-220ENST00000553998 SOS2Q07890 1332 aaPredicted RBP11.86□□□□□ -0.51
ABCD4-220ENST00000553998 ATAD2Q6PL18 1390 aa11.85□□□□□ -0.51
ABCD4-220ENST00000553998 E9PCH4 1651 aa11.84□□□□□ -0.51
ABCD4-220ENST00000553998 NUP155O75694 1391 aa11.84□□□□□ -0.51
ABCD4-220ENST00000553998 FOXD1Q16676 465 aa11.84□□□□□ -0.51
ABCD4-220ENST00000553998 TRPC5Q9UL62 973 aaPredicted RBP11.84□□□□□ -0.51
ABCD4-220ENST00000553998 NRXN3Q9Y4C0 1643 aa11.84□□□□□ -0.51
ABCD4-220ENST00000553998 C1orf167Q5SNV9 1468 aa11.83□□□□□ -0.52
ABCD4-220ENST00000553998 CCDC125Q86Z20 511 aa11.83□□□□□ -0.52
ABCD4-220ENST00000553998 USP21Q9UK80 565 aa11.83□□□□□ -0.52
ABCD4-220ENST00000553998 PTCH1Q13635 1447 aa11.83□□□□□ -0.52
ABCD4-220ENST00000553998 IQGAP3Q86VI3 1631 aa11.82□□□□□ -0.52
ABCD4-220ENST00000553998 ADAMTS2O95450 1211 aa11.82□□□□□ -0.52
ABCD4-220ENST00000553998 ZRANB1Q9UGI0 708 aa11.82□□□□□ -0.52
ABCD4-220ENST00000553998 ATRNO75882 1429 aa11.81□□□□□ -0.52
ABCD4-220ENST00000553998 LAMC1P11047 1609 aa11.81□□□□□ -0.52
ABCD4-220ENST00000553998 EP400Q96L91 3159 aa11.8□□□□□ -0.52
ABCD4-220ENST00000553998 PRAG1Q86YV5 1406 aa11.8□□□□□ -0.52
ABCD4-220ENST00000553998 ORAI2Q96SN7 254 aa11.8□□□□□ -0.52
ABCD4-220ENST00000553998 ZNF326Q5BKZ1 582 aaKnown RBP11.79□□□□□ -0.52
ABCD4-220ENST00000553998 BCL9LQ86UU0 1499 aa11.77□□□□□ -0.52
ABCD4-220ENST00000553998 ROBO2Q9HCK4 1378 aa11.77□□□□□ -0.53
ABCD4-220ENST00000553998 VGFO15240 615 aaPredicted RBP11.76□□□□□ -0.53
ABCD4-220ENST00000553998 MYOM2P54296 1465 aa11.76□□□□□ -0.53
ABCD4-220ENST00000553998 NEXMIFQ5QGS0 1516 aa11.76□□□□□ -0.53
ABCD4-220ENST00000553998 GJD4Q96KN9 370 aaPredicted RBP11.75□□□□□ -0.53
ABCD4-220ENST00000553998 RPGRIP1LQ68CZ1 1315 aa11.74□□□□□ -0.53
ABCD4-220ENST00000553998 NPHP3Q7Z494 1330 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms