RNA–Protein interactions for RNA: ENST00000553691.5

VIPAS39-205, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 806 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-205ENST00000553691 PPP1R15BQ5SWA1 713 aa10.61□□□□□ -0.71
VIPAS39-205ENST00000553691 POTEBQ6S5H4 581 aa10.61□□□□□ -0.71
VIPAS39-205ENST00000553691 CDK13Q14004 1512 aaKnown RBP10.61□□□□□ -0.71
VIPAS39-205ENST00000553691 PREX1Q8TCU6 1659 aa10.6□□□□□ -0.71
VIPAS39-205ENST00000553691 UBTFP17480 764 aaKnown RBP10.59□□□□□ -0.71
VIPAS39-205ENST00000553691 ZSWIM6Q9HCJ5 1215 aa10.59□□□□□ -0.71
VIPAS39-205ENST00000553691 PCDHGA4Q9Y5G9 962 aa10.59□□□□□ -0.71
VIPAS39-205ENST00000553691 PHLDB1Q86UU1 1377 aa10.58□□□□□ -0.72
VIPAS39-205ENST00000553691 NUDT7P0C024 238 aa10.58□□□□□ -0.72
VIPAS39-205ENST00000553691 CDAN1Q8IWY9 1227 aa10.58□□□□□ -0.72
VIPAS39-205ENST00000553691 UPF1Q92900 1129 aaKnown RBP eCLIP10.58□□□□□ -0.72
VIPAS39-205ENST00000553691 HS3ST6Q96QI5 342 aa10.58□□□□□ -0.72
VIPAS39-205ENST00000553691 HECW1Q76N89 1606 aa10.58□□□□□ -0.72
VIPAS39-205ENST00000553691 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.58□□□□□ -0.72
VIPAS39-205ENST00000553691 ARAP3Q8WWN8 1544 aa10.58□□□□□ -0.72
VIPAS39-205ENST00000553691 ERBB3P21860 1342 aa10.58□□□□□ -0.72
VIPAS39-205ENST00000553691 FER1L4A9Z1Z3 1794 aa10.57□□□□□ -0.72
VIPAS39-205ENST00000553691 MED1Q15648 1581 aaPredicted RBP10.57□□□□□ -0.72
VIPAS39-205ENST00000553691 TTC37Q6PGP7 1564 aa10.57□□□□□ -0.72
VIPAS39-205ENST00000553691 RAPGEF3O95398 923 aa10.57□□□□□ -0.72
VIPAS39-205ENST00000553691 DDX27Q96GQ7 796 aaKnown RBP10.57□□□□□ -0.72
VIPAS39-205ENST00000553691 FMN1Q68DA7 1419 aa10.57□□□□□ -0.72
VIPAS39-205ENST00000553691 FRMPD1Q5SYB0 1578 aa10.56□□□□□ -0.72
VIPAS39-205ENST00000553691 SLC34A2O95436 690 aa10.55□□□□□ -0.72
VIPAS39-205ENST00000553691 VARS2Q5ST30 1063 aaKnown RBP10.54□□□□□ -0.72
VIPAS39-205ENST00000553691 NEO1Q92859 1461 aa10.54□□□□□ -0.72
VIPAS39-205ENST00000553691 POGZQ7Z3K3 1410 aa10.53□□□□□ -0.72
VIPAS39-205ENST00000553691 KIF14Q15058 1648 aa10.53□□□□□ -0.72
VIPAS39-205ENST00000553691 MFSD10Q14728 455 aa10.52□□□□□ -0.73
VIPAS39-205ENST00000553691 CASKIN1Q8WXD9 1431 aa10.51□□□□□ -0.73
VIPAS39-205ENST00000553691 RICTORQ6R327 1708 aa10.51□□□□□ -0.73
VIPAS39-205ENST00000553691 PTCD2Q8WV60 388 aaKnown RBP10.51□□□□□ -0.73
VIPAS39-205ENST00000553691 TSHZ2Q9NRE2 1034 aa10.51□□□□□ -0.73
VIPAS39-205ENST00000553691 IQSEC2Q5JU85 1478 aa10.5□□□□□ -0.73
VIPAS39-205ENST00000553691 CLIP1P30622 1438 aa10.5□□□□□ -0.73
VIPAS39-205ENST00000553691 LTBP4Q8N2S1 1624 aa10.49□□□□□ -0.73
VIPAS39-205ENST00000553691 PLEKHD1A6NEE1 506 aa10.49□□□□□ -0.73
VIPAS39-205ENST00000553691 ZNF316A6NFI3 1004 aaPredicted RBP10.49□□□□□ -0.73
VIPAS39-205ENST00000553691 MLECQ14165 292 aa10.49□□□□□ -0.73
VIPAS39-205ENST00000553691 LHX6Q9UPM6 363 aa10.49□□□□□ -0.73
VIPAS39-205ENST00000553691 TROQ12816 1431 aaPredicted RBP10.49□□□□□ -0.73
VIPAS39-205ENST00000553691 FYCO1Q9BQS8 1478 aa10.49□□□□□ -0.73
VIPAS39-205ENST00000553691 ARHGEF40Q8TER5 1519 aa10.48□□□□□ -0.73
VIPAS39-205ENST00000553691 CFAP74Q9C0B2 1584 aa10.48□□□□□ -0.73
VIPAS39-205ENST00000553691 SIGLEC1Q9BZZ2 1709 aa10.48□□□□□ -0.73
VIPAS39-205ENST00000553691 OXER1Q8TDS5 423 aa10.48□□□□□ -0.73
VIPAS39-205ENST00000553691 YEATS2Q9ULM3 1422 aa10.48□□□□□ -0.73
VIPAS39-205ENST00000553691 FANCAO15360 1455 aa10.48□□□□□ -0.73
VIPAS39-205ENST00000553691 MYO5CQ9NQX4 1742 aa10.47□□□□□ -0.73
VIPAS39-205ENST00000553691 TBC1D12O60347 775 aa10.47□□□□□ -0.73
VIPAS39-205ENST00000553691 EMILIN3Q9NT22 766 aa10.47□□□□□ -0.73
VIPAS39-205ENST00000553691 PLCH2O75038 1416 aa10.47□□□□□ -0.73
VIPAS39-205ENST00000553691 AKNAQ7Z591 1439 aa10.47□□□□□ -0.73
VIPAS39-205ENST00000553691 CCDC18Q5T9S5 1454 aa10.46□□□□□ -0.74
VIPAS39-205ENST00000553691 ZMYM4Q5VZL5 1548 aa10.46□□□□□ -0.74
VIPAS39-205ENST00000553691 CDC42BPBQ9Y5S2 1711 aa10.46□□□□□ -0.74
VIPAS39-205ENST00000553691 PREX2Q70Z35 1606 aa10.44□□□□□ -0.74
VIPAS39-205ENST00000553691 DENND4BO75064 1496 aaPredicted RBP10.43□□□□□ -0.74
VIPAS39-205ENST00000553691 CEP162Q5TB80 1403 aa10.43□□□□□ -0.74
VIPAS39-205ENST00000553691 CDC42BPAQ5VT25 1732 aa10.43□□□□□ -0.74
VIPAS39-205ENST00000553691 MAP3K9P80192 1104 aa10.42□□□□□ -0.74
VIPAS39-205ENST00000553691 PLCB2Q00722 1185 aa10.42□□□□□ -0.74
VIPAS39-205ENST00000553691 KRTAP3-3Q9BYR6 98 aa10.42□□□□□ -0.74
VIPAS39-205ENST00000553691 KRTAP3-2Q9BYR7 98 aa10.42□□□□□ -0.74
VIPAS39-205ENST00000553691 SETD1BQ9UPS6 1966 aaKnown RBP10.42□□□□□ -0.74
VIPAS39-205ENST00000553691 ATP1B4Q9UN42 357 aaPredicted RBP10.41□□□□□ -0.74
VIPAS39-205ENST00000553691 KDM5CP41229 1560 aa10.4□□□□□ -0.74
VIPAS39-205ENST00000553691 UBAP1LF5GYI3 381 aa10.4□□□□□ -0.74
VIPAS39-205ENST00000553691 EVI5O60447 810 aa10.4□□□□□ -0.74
VIPAS39-205ENST00000553691 WDR70Q9NW82 654 aa10.4□□□□□ -0.74
VIPAS39-205ENST00000553691 UHRF1BP1Q6BDS2 1440 aa10.4□□□□□ -0.75
VIPAS39-205ENST00000553691 ABCC1P33527 1531 aa10.39□□□□□ -0.75
VIPAS39-205ENST00000553691 ARHGEF12Q9NZN5 1544 aa10.39□□□□□ -0.75
VIPAS39-205ENST00000553691 DPYSL4O14531 572 aa10.39□□□□□ -0.75
VIPAS39-205ENST00000553691 CEBPAP49715 358 aaPredicted RBP10.39□□□□□ -0.75
VIPAS39-205ENST00000553691 ZNF687Q8N1G0 1237 aa10.39□□□□□ -0.75
VIPAS39-205ENST00000553691 CDK11AQ9UQ88 783 aaPredicted RBP10.39□□□□□ -0.75
VIPAS39-205ENST00000553691 PTPRTO14522 1441 aa10.39□□□□□ -0.75
VIPAS39-205ENST00000553691 SCAPERQ9BY12 1400 aa10.39□□□□□ -0.75
VIPAS39-205ENST00000553691 ARHGAP5Q13017 1502 aa10.38□□□□□ -0.75
VIPAS39-205ENST00000553691 ITSN2Q9NZM3 1697 aa10.38□□□□□ -0.75
VIPAS39-205ENST00000553691 LOC105371045A0A1W2PR82 267 aa10.38□□□□□ -0.75
VIPAS39-205ENST00000553691 CAMK2BQ13554 666 aa10.38□□□□□ -0.75
VIPAS39-205ENST00000553691 ZFYVE16Q7Z3T8 1539 aa10.38□□□□□ -0.75
VIPAS39-205ENST00000553691 MAGI2Q86UL8 1455 aa10.37□□□□□ -0.75
VIPAS39-205ENST00000553691 SAMD9LQ8IVG5 1584 aa10.37□□□□□ -0.75
VIPAS39-205ENST00000553691 AXIN2Q9Y2T1 843 aa10.37□□□□□ -0.75
VIPAS39-205ENST00000553691 GPATCH8Q9UKJ3 1502 aaKnown RBP10.37□□□□□ -0.75
VIPAS39-205ENST00000553691 HAP1P54257 671 aaPredicted RBP10.36□□□□□ -0.75
VIPAS39-205ENST00000553691 ESF1Q9H501 851 aaKnown RBP10.36□□□□□ -0.75
VIPAS39-205ENST00000553691 EFCAB2Q5VUJ9 269 aa10.35□□□□□ -0.75
VIPAS39-205ENST00000553691 SUPT6HQ7KZ85 1726 aaKnown RBP10.35□□□□□ -0.75
VIPAS39-205ENST00000553691 ZNF518AQ6AHZ1 1483 aa10.35□□□□□ -0.75
VIPAS39-205ENST00000553691 TIAM1Q13009 1591 aa10.35□□□□□ -0.75
VIPAS39-205ENST00000553691 TRAPPC8Q9Y2L5 1435 aa10.34□□□□□ -0.75
VIPAS39-205ENST00000553691 EHBP1L1Q8N3D4 1523 aa10.34□□□□□ -0.75
VIPAS39-205ENST00000553691 ABCA6Q8N139 1617 aa10.34□□□□□ -0.75
VIPAS39-205ENST00000553691 SETD1AO15047 1707 aaKnown RBP10.34□□□□□ -0.75
VIPAS39-205ENST00000553691 E2F4Q16254 413 aa10.34□□□□□ -0.75
VIPAS39-205ENST00000553691 POTEEQ6S8J3 1075 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms