RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	FAM161A	Q3B820	660 aa		11.67	□□□□□ -0.54
ATXN3-223	ENST00000553686	PTPN5	P54829	565 aa		11.66	□□□□□ -0.54
ATXN3-223	ENST00000553686	EYA1	Q99502	592 aa		11.66	□□□□□ -0.54
ATXN3-223	ENST00000553686	HCST	Q9UBK5	93 aa		11.66	□□□□□ -0.54
ATXN3-223	ENST00000553686	THSD4	Q6ZMP0	1018 aa		11.65	□□□□□ -0.54
ATXN3-223	ENST00000553686	BCAN	Q96GW7	911 aa		11.65	□□□□□ -0.54
ATXN3-223	ENST00000553686	ADGRG1	Q9Y653	693 aa		11.65	□□□□□ -0.54
ATXN3-223	ENST00000553686	RBM46	Q8TBY0	533 aa	Known RBP	11.64	□□□□□ -0.55
ATXN3-223	ENST00000553686	SOWAHB	A6NEL2	793 aa		11.63	□□□□□ -0.55
ATXN3-223	ENST00000553686	HDGF	P51858	240 aa	Known RBP	11.63	□□□□□ -0.55
ATXN3-223	ENST00000553686	WDR62	O43379	1518 aa		11.63	□□□□□ -0.55
ATXN3-223	ENST00000553686	OAT	P04181	439 aa		11.62	□□□□□ -0.55
ATXN3-223	ENST00000553686	BCAM	P50895	628 aa		11.62	□□□□□ -0.55
ATXN3-223	ENST00000553686	RIMBP3C	A6NJZ7	1639 aa		11.61	□□□□□ -0.55
ATXN3-223	ENST00000553686	RIMBP3B	A6NNM3	1639 aa		11.61	□□□□□ -0.55
ATXN3-223	ENST00000553686	RIMBP3	Q9UFD9	1639 aa		11.61	□□□□□ -0.55
ATXN3-223	ENST00000553686	SAMD7	Q7Z3H4	446 aa		11.61	□□□□□ -0.55
ATXN3-223	ENST00000553686	LRCH3	Q96II8	777 aa		11.61	□□□□□ -0.55
ATXN3-223	ENST00000553686	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.61	□□□□□ -0.55
ATXN3-223	ENST00000553686	ARHGEF11	O15085	1522 aa		11.6	□□□□□ -0.55
ATXN3-223	ENST00000553686	KIF21A	Q7Z4S6	1674 aa		11.59	□□□□□ -0.55
ATXN3-223	ENST00000553686	RCCD1	A6NED2	376 aa		11.57	□□□□□ -0.56
ATXN3-223	ENST00000553686	SWT1	Q5T5J6	900 aa	Known RBP	11.57	□□□□□ -0.56
ATXN3-223	ENST00000553686	PXYLP1	Q8TE99	480 aa		11.57	□□□□□ -0.56
ATXN3-223	ENST00000553686	ZC3H15	Q8WU90	426 aa	Known RBP	11.57	□□□□□ -0.56
ATXN3-223	ENST00000553686	SMARCA4	P51532	1647 aa		11.57	□□□□□ -0.56
ATXN3-223	ENST00000553686	DNAJB2	P25686	324 aa		11.56	□□□□□ -0.56
ATXN3-223	ENST00000553686	METTL3	Q86U44	580 aa	Known RBP	11.55	□□□□□ -0.56
ATXN3-223	ENST00000553686	TSR3	Q9UJK0	312 aa	Known RBP	11.55	□□□□□ -0.56
ATXN3-223	ENST00000553686	HPS5	Q9UPZ3	1129 aa		11.55	□□□□□ -0.56
ATXN3-223	ENST00000553686	CEP164	Q9UPV0	1460 aa		11.55	□□□□□ -0.56
ATXN3-223	ENST00000553686	PPP4C	P60510	307 aa		11.54	□□□□□ -0.56
ATXN3-223	ENST00000553686	MAP2K5	Q13163	448 aa		11.54	□□□□□ -0.56
ATXN3-223	ENST00000553686	WBP1L	Q9NX94	342 aa		11.54	□□□□□ -0.56
ATXN3-223	ENST00000553686	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.54	□□□□□ -0.56
ATXN3-223	ENST00000553686	IRF6	O14896	467 aa		11.53	□□□□□ -0.56
ATXN3-223	ENST00000553686	KRI1	Q8N9T8	703 aa	Known RBP	11.53	□□□□□ -0.56
ATXN3-223	ENST00000553686	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.52	□□□□□ -0.57
ATXN3-223	ENST00000553686	RNF40	O75150	1001 aa		11.52	□□□□□ -0.57
ATXN3-223	ENST00000553686	ZMYND10	O75800	440 aa		11.52	□□□□□ -0.57
ATXN3-223	ENST00000553686	TMEM134	Q9H6X4	195 aa		11.52	□□□□□ -0.57
ATXN3-223	ENST00000553686	SLF2	Q8IX21	1173 aa		11.51	□□□□□ -0.57
ATXN3-223	ENST00000553686	SLC4A3	P48751	1232 aa		11.5	□□□□□ -0.57
ATXN3-223	ENST00000553686	BARGIN	Q6ZT62	677 aa		11.5	□□□□□ -0.57
ATXN3-223	ENST00000553686	PEG3	Q9GZU2	1588 aa		11.5	□□□□□ -0.57
ATXN3-223	ENST00000553686	PHOX2B	Q99453	314 aa		11.49	□□□□□ -0.57
ATXN3-223	ENST00000553686	FANCD2	Q9BXW9	1451 aa		11.49	□□□□□ -0.57
ATXN3-223	ENST00000553686	NYAP1	Q6ZVC0	841 aa		11.48	□□□□□ -0.57
ATXN3-223	ENST00000553686	NLRP7	Q8WX94	980 aa		11.48	□□□□□ -0.57
ATXN3-223	ENST00000553686	CCDC102A	Q96A19	550 aa		11.46	□□□□□ -0.57
ATXN3-223	ENST00000553686	DAXX	Q9UER7	740 aa	Predicted RBP	11.45	□□□□□ -0.58
ATXN3-223	ENST00000553686	ARAP1	Q96P48	1450 aa		11.44	□□□□□ -0.58
ATXN3-223	ENST00000553686	NECTIN2	Q92692	538 aa		11.44	□□□□□ -0.58
ATXN3-223	ENST00000553686	PLA2G2E	Q9NZK7	142 aa		11.42	□□□□□ -0.58
ATXN3-223	ENST00000553686	RSF1	Q96T23	1441 aa	Predicted RBP	11.42	□□□□□ -0.58
ATXN3-223	ENST00000553686	SLC10A3	P09131	477 aa		11.4	□□□□□ -0.58
ATXN3-223	ENST00000553686	APLP1	P51693	650 aa		11.4	□□□□□ -0.58
ATXN3-223	ENST00000553686	RSPH4A	Q5TD94	716 aa		11.4	□□□□□ -0.58
ATXN3-223	ENST00000553686	DDX11L8	A8MPP1	907 aa		11.38	□□□□□ -0.59
ATXN3-223	ENST00000553686	MDM2	Q00987	491 aa	Predicted RBP	11.38	□□□□□ -0.59
ATXN3-223	ENST00000553686	IFT140	Q96RY7	1462 aa		11.38	□□□□□ -0.59
ATXN3-223	ENST00000553686	URB2	Q14146	1524 aa	Known RBP	11.37	□□□□□ -0.59
ATXN3-223	ENST00000553686	RDH13	Q8NBN7	331 aa		11.36	□□□□□ -0.59
ATXN3-223	ENST00000553686	AK7	Q96M32	723 aa		11.36	□□□□□ -0.59
ATXN3-223	ENST00000553686	CFTR	P13569	1480 aa		11.36	□□□□□ -0.59
ATXN3-223	ENST00000553686	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.35	□□□□□ -0.59
ATXN3-223	ENST00000553686	SULF1	Q8IWU6	871 aa		11.35	□□□□□ -0.59
ATXN3-223	ENST00000553686	PRR14	Q9BWN1	585 aa		11.35	□□□□□ -0.59
ATXN3-223	ENST00000553686	MROH2B	Q7Z745	1585 aa		11.35	□□□□□ -0.59
ATXN3-223	ENST00000553686	CFH	P08603	1231 aa		11.34	□□□□□ -0.59
ATXN3-223	ENST00000553686	KMT5B	Q4FZB7	885 aa		11.34	□□□□□ -0.59
ATXN3-223	ENST00000553686	SLC24A3	Q9HC58	644 aa		11.34	□□□□□ -0.59
ATXN3-223	ENST00000553686	CLCN1	P35523	988 aa		11.33	□□□□□ -0.6
ATXN3-223	ENST00000553686	ITGBL1	O95965	494 aa	Predicted RBP	11.32	□□□□□ -0.6
ATXN3-223	ENST00000553686	KCNC4	Q03721	635 aa		11.32	□□□□□ -0.6
ATXN3-223	ENST00000553686	TJAP1	Q5JTD0	557 aa		11.32	□□□□□ -0.6
ATXN3-223	ENST00000553686	GPCPD1	Q9NPB8	672 aa		11.32	□□□□□ -0.6
ATXN3-223	ENST00000553686	TRIM66	O15016	1216 aa		11.31	□□□□□ -0.6
ATXN3-223	ENST00000553686	ACTN4	O43707	911 aa	Known RBP	11.31	□□□□□ -0.6
ATXN3-223	ENST00000553686	MTR	Q99707	1265 aa		11.31	□□□□□ -0.6
ATXN3-223	ENST00000553686	PCDHB3	Q9Y5E6	796 aa		11.3	□□□□□ -0.6
ATXN3-223	ENST00000553686	GCGR	P47871	477 aa		11.29	□□□□□ -0.6
ATXN3-223	ENST00000553686	COPS2	P61201	443 aa		11.29	□□□□□ -0.6
ATXN3-223	ENST00000553686	AMHR2	Q16671	573 aa		11.29	□□□□□ -0.6
ATXN3-223	ENST00000553686	TMUB1	Q9BVT8	246 aa		11.29	□□□□□ -0.6
ATXN3-223	ENST00000553686	REPIN1	Q9BWE0	567 aa	Known RBP	11.29	□□□□□ -0.6
ATXN3-223	ENST00000553686	IL21	Q9HBE4	155 aa		11.29	□□□□□ -0.6
ATXN3-223	ENST00000553686	TTLL12	Q14166	644 aa	Predicted RBP	11.28	□□□□□ -0.6
ATXN3-223	ENST00000553686	IFFO2	Q5TF58	517 aa		11.28	□□□□□ -0.6
ATXN3-223	ENST00000553686	ZNF516	Q92618	1163 aa		11.27	□□□□□ -0.61
ATXN3-223	ENST00000553686	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.27	□□□□□ -0.61
ATXN3-223	ENST00000553686	CD46	P15529	392 aa		11.26	□□□□□ -0.61
ATXN3-223	ENST00000553686	SSTR3	P32745	418 aa	Predicted RBP	11.25	□□□□□ -0.61
ATXN3-223	ENST00000553686	BLOC1S3	Q6QNY0	202 aa		11.25	□□□□□ -0.61
ATXN3-223	ENST00000553686	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.25	□□□□□ -0.61
ATXN3-223	ENST00000553686	AQR	O60306	1485 aa	Known RBP eCLIP	11.24	□□□□□ -0.61
ATXN3-223	ENST00000553686	FUT2	Q10981	343 aa		11.23	□□□□□ -0.61
ATXN3-223	ENST00000553686	PUS10	Q3MIT2	529 aa	Known RBP	11.23	□□□□□ -0.61
ATXN3-223	ENST00000553686	ZPR1	O75312	459 aa		11.22	□□□□□ -0.61
ATXN3-223	ENST00000553686	ATP6V1A	P38606	617 aa		11.22	□□□□□ -0.61

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