RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 CHGAP10645 457 aaKnown RBP19.4■□□□□ 0.7
LINC00643-202ENST00000553426 SLC26A8Q96RN1 970 aa19.4■□□□□ 0.7
LINC00643-202ENST00000553426 GCC2Q8IWJ2 1684 aa19.4■□□□□ 0.7
LINC00643-202ENST00000553426 KCNA6P17658 529 aa19.39■□□□□ 0.69
LINC00643-202ENST00000553426 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.37■□□□□ 0.69
LINC00643-202ENST00000553426 PROSER2Q86WR7 435 aaPredicted RBP19.36■□□□□ 0.69
LINC00643-202ENST00000553426 IQGAP3Q86VI3 1631 aa19.36■□□□□ 0.69
LINC00643-202ENST00000553426 RIMS2Q9UQ26 1411 aa19.35■□□□□ 0.69
LINC00643-202ENST00000553426 RGS17Q9UGC6 210 aaPredicted RBP19.34■□□□□ 0.69
LINC00643-202ENST00000553426 TMEM94Q12767 1356 aa19.33■□□□□ 0.69
LINC00643-202ENST00000553426 PLEKHG1Q9ULL1 1385 aa19.33■□□□□ 0.69
LINC00643-202ENST00000553426 E9PCH4 1651 aa19.33■□□□□ 0.68
LINC00643-202ENST00000553426 ZFYVE9O95405 1425 aa19.33■□□□□ 0.68
LINC00643-202ENST00000553426 TMEM131LA2VDJ0 1609 aa19.32■□□□□ 0.68
LINC00643-202ENST00000553426 RRBP1Q9P2E9 1410 aaKnown RBP19.3■□□□□ 0.68
LINC00643-202ENST00000553426 XIRP1Q702N8 1843 aaKnown RBP19.3■□□□□ 0.68
LINC00643-202ENST00000553426 NKTRP30414 1462 aaKnown RBP19.29■□□□□ 0.68
LINC00643-202ENST00000553426 TBX22Q9Y458 520 aa19.28■□□□□ 0.68
LINC00643-202ENST00000553426 MYO5BQ9ULV0 1848 aa19.28■□□□□ 0.68
LINC00643-202ENST00000553426 NUTM2DQ5VT03 806 aaPredicted RBP19.26■□□□□ 0.67
LINC00643-202ENST00000553426 MSH6P52701 1360 aa19.26■□□□□ 0.67
LINC00643-202ENST00000553426 NWD1Q149M9 1564 aa19.25■□□□□ 0.67
LINC00643-202ENST00000553426 RBM33Q96EV2 1170 aaKnown RBP19.25■□□□□ 0.67
LINC00643-202ENST00000553426 FAM135BQ49AJ0 1406 aa19.25■□□□□ 0.67
LINC00643-202ENST00000553426 ZNF326Q5BKZ1 582 aaKnown RBP19.23■□□□□ 0.67
LINC00643-202ENST00000553426 C14orf37Q86TY3 774 aa19.23■□□□□ 0.67
LINC00643-202ENST00000553426 PIK3R4Q99570 1358 aa19.21■□□□□ 0.67
LINC00643-202ENST00000553426 NAIPQ13075 1403 aa19.21■□□□□ 0.67
LINC00643-202ENST00000553426 TRIM52Q96A61 297 aa19.21■□□□□ 0.67
LINC00643-202ENST00000553426 DIP2AQ14689 1571 aa19.2■□□□□ 0.66
LINC00643-202ENST00000553426 CHD2O14647 1828 aaKnown RBP19.2■□□□□ 0.66
LINC00643-202ENST00000553426 POTEAQ6S8J7 498 aa19.19■□□□□ 0.66
LINC00643-202ENST00000553426 SLAIN2Q9P270 581 aa19.19■□□□□ 0.66
LINC00643-202ENST00000553426 SPHKAPQ2M3C7 1700 aa19.19■□□□□ 0.66
LINC00643-202ENST00000553426 ADAMTS13Q76LX8 1427 aa19.18■□□□□ 0.66
LINC00643-202ENST00000553426 NCOA3Q9Y6Q9 1424 aa19.18■□□□□ 0.66
LINC00643-202ENST00000553426 TRPM2O94759 1503 aa19.16■□□□□ 0.66
LINC00643-202ENST00000553426 HFM1A2PYH4 1435 aa19.16■□□□□ 0.66
LINC00643-202ENST00000553426 AMOTL2Q9Y2J4 779 aa19.15■□□□□ 0.66
LINC00643-202ENST00000553426 ROBO1Q9Y6N7 1651 aa19.14■□□□□ 0.66
LINC00643-202ENST00000553426 ATF3P18847 181 aa19.14■□□□□ 0.65
LINC00643-202ENST00000553426 CADPS2Q86UW7 1296 aa19.14■□□□□ 0.65
LINC00643-202ENST00000553426 SLC4A1APQ9BWU0 796 aaKnown RBP19.14■□□□□ 0.65
LINC00643-202ENST00000553426 C19orf44Q9H6X5 657 aa19.14■□□□□ 0.65
LINC00643-202ENST00000553426 SETD1AO15047 1707 aaKnown RBP19.1■□□□□ 0.65
LINC00643-202ENST00000553426 SETBP1Q9Y6X0 1596 aa19.09■□□□□ 0.65
LINC00643-202ENST00000553426 CLTCL1P53675 1640 aa19.08■□□□□ 0.65
LINC00643-202ENST00000553426 VGFO15240 615 aaPredicted RBP19.08■□□□□ 0.64
LINC00643-202ENST00000553426 KIF1BO60333 1816 aa19.07■□□□□ 0.64
LINC00643-202ENST00000553426 PTPRUQ92729 1446 aa19.07■□□□□ 0.64
LINC00643-202ENST00000553426 RPGRIP1LQ68CZ1 1315 aa19.05■□□□□ 0.64
LINC00643-202ENST00000553426 JCADQ9P266 1359 aa19.05■□□□□ 0.64
LINC00643-202ENST00000553426 NEXMIFQ5QGS0 1516 aa19.05■□□□□ 0.64
LINC00643-202ENST00000553426 PHLPP1O60346 1717 aa19.04■□□□□ 0.64
LINC00643-202ENST00000553426 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.04■□□□□ 0.64
LINC00643-202ENST00000553426 METP08581 1390 aa19.04■□□□□ 0.64
LINC00643-202ENST00000553426 NRXN3Q9Y4C0 1643 aa19.03■□□□□ 0.64
LINC00643-202ENST00000553426 ACIN1Q9UKV3 1341 aaKnown RBP19.02■□□□□ 0.64
LINC00643-202ENST00000553426 DCCP43146 1447 aa19.02■□□□□ 0.64
LINC00643-202ENST00000553426 XRN1Q8IZH2 1706 aaKnown RBP19■□□□□ 0.63
LINC00643-202ENST00000553426 FOXD1Q16676 465 aa18.98■□□□□ 0.63
LINC00643-202ENST00000553426 CCDC144AA2RUR9 1427 aa18.98■□□□□ 0.63
LINC00643-202ENST00000553426 BRINP3Q76B58 766 aa18.97■□□□□ 0.63
LINC00643-202ENST00000553426 MPHOSPH9Q99550 1183 aa18.97■□□□□ 0.63
LINC00643-202ENST00000553426 SPATA31A6Q5VVP1 1343 aa18.97■□□□□ 0.63
LINC00643-202ENST00000553426 ADGRL3Q9HAR2 1447 aa18.96■□□□□ 0.63
LINC00643-202ENST00000553426 COL16A1Q07092 1604 aaPredicted RBP18.96■□□□□ 0.63
LINC00643-202ENST00000553426 MEX3CQ5U5Q3 659 aaKnown RBP18.95■□□□□ 0.62
LINC00643-202ENST00000553426 AHDC1Q5TGY3 1603 aaPredicted RBP18.95■□□□□ 0.62
LINC00643-202ENST00000553426 RGL3Q3MIN7 710 aa18.93■□□□□ 0.62
LINC00643-202ENST00000553426 LRP6O75581 1613 aa18.92■□□□□ 0.62
LINC00643-202ENST00000553426 MST1RQ04912 1400 aa18.92■□□□□ 0.62
LINC00643-202ENST00000553426 PTCH1Q13635 1447 aa18.92■□□□□ 0.62
LINC00643-202ENST00000553426 ASXL1Q8IXJ9 1541 aa18.9■□□□□ 0.62
LINC00643-202ENST00000553426 LRRC59Q96AG4 307 aaKnown RBP18.9■□□□□ 0.62
LINC00643-202ENST00000553426 ANKRD30BQ9BXX2 1392 aa18.9■□□□□ 0.62
LINC00643-202ENST00000553426 SETD5Q9C0A6 1442 aa18.9■□□□□ 0.62
LINC00643-202ENST00000553426 PPLO60437 1756 aa18.89■□□□□ 0.61
LINC00643-202ENST00000553426 UPF1Q92900 1129 aaKnown RBP eCLIP18.88■□□□□ 0.61
LINC00643-202ENST00000553426 ROBO2Q9HCK4 1378 aa18.88■□□□□ 0.61
LINC00643-202ENST00000553426 ZNF772Q68DY9 489 aaPredicted RBP18.87■□□□□ 0.61
LINC00643-202ENST00000553426 NALCNQ8IZF0 1738 aa18.86■□□□□ 0.61
LINC00643-202ENST00000553426 SHPRHQ149N8 1683 aa18.86■□□□□ 0.61
LINC00643-202ENST00000553426 SPATA31E1Q6ZUB1 1445 aa18.86■□□□□ 0.61
LINC00643-202ENST00000553426 ADGRF5Q8IZF2 1346 aa18.86■□□□□ 0.61
LINC00643-202ENST00000553426 NUTM2BA6NNL0 878 aaPredicted RBP18.86■□□□□ 0.61
LINC00643-202ENST00000553426 NUTM2EB1AL46 878 aaPredicted RBP18.86■□□□□ 0.61
LINC00643-202ENST00000553426 NUTM2AQ8IVF1 878 aaPredicted RBP18.86■□□□□ 0.61
LINC00643-202ENST00000553426 PRAG1Q86YV5 1406 aa18.85■□□□□ 0.61
LINC00643-202ENST00000553426 C1orf167Q5SNV9 1468 aa18.84■□□□□ 0.61
LINC00643-202ENST00000553426 NHSL1Q5SYE7 1610 aa18.83■□□□□ 0.61
LINC00643-202ENST00000553426 STK26Q9P289 416 aa18.83■□□□□ 0.6
LINC00643-202ENST00000553426 DDX17Q92841 729 aaKnown RBP18.81■□□□□ 0.6
LINC00643-202ENST00000553426 RAB3GAP2Q9H2M9 1393 aa18.81■□□□□ 0.6
LINC00643-202ENST00000553426 ORAI2Q96SN7 254 aa18.8■□□□□ 0.6
LINC00643-202ENST00000553426 LRPPRCP42704 1394 aaKnown RBP18.79■□□□□ 0.6
LINC00643-202ENST00000553426 PIK3C2GO75747 1445 aa18.78■□□□□ 0.6
LINC00643-202ENST00000553426 TMEM132EQ6IEE7 984 aa18.78■□□□□ 0.6
LINC00643-202ENST00000553426 ABCC11Q96J66 1382 aa18.78■□□□□ 0.6
LINC00643-202ENST00000553426 TECPR2O15040 1411 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms