RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 ZKSCAN1P17029 563 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-208ENST00000553289 CPLX2Q6PUV4 134 aaKnown RBP14.15□□□□□ -0.14
SYNE2-208ENST00000553289 CCDC9Q9Y3X0 531 aaKnown RBP14.15□□□□□ -0.14
SYNE2-208ENST00000553289 MINK1Q8N4C8 1332 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-208ENST00000553289 BRD4O60885 1362 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-208ENST00000553289 KIF7Q2M1P5 1343 aa14.15□□□□□ -0.14
SYNE2-208ENST00000553289 GOLGA6L19H0YKK7 550 aa14.14□□□□□ -0.15
SYNE2-208ENST00000553289 FRAT2O75474 233 aaPredicted RBP14.14□□□□□ -0.15
SYNE2-208ENST00000553289 GTF2E1P29083 439 aaPredicted RBP14.14□□□□□ -0.15
SYNE2-208ENST00000553289 GNAI1P63096 354 aa14.14□□□□□ -0.15
SYNE2-208ENST00000553289 RIPK4P57078 832 aa14.14□□□□□ -0.15
SYNE2-208ENST00000553289 CHMP5Q9NZZ3 219 aa14.14□□□□□ -0.15
SYNE2-208ENST00000553289 NUTM2FA1L443 756 aa14.14□□□□□ -0.15
SYNE2-208ENST00000553289 DDX58O95786 925 aaKnown RBP14.14□□□□□ -0.15
SYNE2-208ENST00000553289 RSPH6AQ9H0K4 717 aa14.14□□□□□ -0.15
SYNE2-208ENST00000553289 G3V3G9 751 aa14.13□□□□□ -0.15
SYNE2-208ENST00000553289 DCAF8Q5TAQ9 597 aa14.13□□□□□ -0.15
SYNE2-208ENST00000553289 ANKRD50Q9ULJ7 1429 aa14.13□□□□□ -0.15
SYNE2-208ENST00000553289 HSP90AB4PQ58FF6 505 aa14.13□□□□□ -0.15
SYNE2-208ENST00000553289 SYNE3Q6ZMZ3 975 aa14.13□□□□□ -0.15
SYNE2-208ENST00000553289 TTC5Q8N0Z6 440 aa14.13□□□□□ -0.15
SYNE2-208ENST00000553289 AKAP17AQ02040 695 aaKnown RBP14.13□□□□□ -0.15
SYNE2-208ENST00000553289 C9orf78Q9NZ63 289 aaPredicted RBP14.12□□□□□ -0.15
SYNE2-208ENST00000553289 ERICH3Q5RHP9 1530 aa14.12□□□□□ -0.15
SYNE2-208ENST00000553289 BECN2A8MW95 431 aa14.12□□□□□ -0.15
SYNE2-208ENST00000553289 RNF20Q5VTR2 975 aa14.12□□□□□ -0.15
SYNE2-208ENST00000553289 TSR1Q2NL82 804 aaKnown RBP14.11□□□□□ -0.15
SYNE2-208ENST00000553289 INTS3Q68E01 1043 aaKnown RBP14.11□□□□□ -0.15
SYNE2-208ENST00000553289 TPM1P09493 284 aa14.1□□□□□ -0.15
SYNE2-208ENST00000553289 MARCH6O60337 910 aa14.1□□□□□ -0.15
SYNE2-208ENST00000553289 IFIT2P09913 472 aaKnown RBP14.1□□□□□ -0.15
SYNE2-208ENST00000553289 FOXD4L5Q5VV16 416 aaPredicted RBP14.1□□□□□ -0.15
SYNE2-208ENST00000553289 FOXD4L4Q8WXT5 416 aaPredicted RBP14.1□□□□□ -0.15
SYNE2-208ENST00000553289 NCOA2Q15596 1464 aa14.1□□□□□ -0.15
SYNE2-208ENST00000553289 NUCB2P80303 420 aa14.1□□□□□ -0.15
SYNE2-208ENST00000553289 TPD52L1Q16890 204 aaPredicted RBP14.1□□□□□ -0.15
SYNE2-208ENST00000553289 TPM2P07951 284 aa14.09□□□□□ -0.15
SYNE2-208ENST00000553289 WASHC2AQ641Q2 1341 aa14.09□□□□□ -0.15
SYNE2-208ENST00000553289 RRBP1Q9P2E9 1410 aaKnown RBP14.09□□□□□ -0.15
SYNE2-208ENST00000553289 CEP89Q96ST8 783 aa14.08□□□□□ -0.15
SYNE2-208ENST00000553289 TRIM29Q14134 588 aa14.08□□□□□ -0.16
SYNE2-208ENST00000553289 NCAPD3P42695 1498 aa14.07□□□□□ -0.16
SYNE2-208ENST00000553289 SLC4A3P48751 1232 aa14.07□□□□□ -0.16
SYNE2-208ENST00000553289 AMOTL1Q8IY63 956 aa14.07□□□□□ -0.16
SYNE2-208ENST00000553289 RAD54L2Q9Y4B4 1467 aa14.07□□□□□ -0.16
SYNE2-208ENST00000553289 ERC2O15083 957 aa14.07□□□□□ -0.16
SYNE2-208ENST00000553289 CREBRFQ8IUR6 639 aa14.07□□□□□ -0.16
SYNE2-208ENST00000553289 G3BP1Q13283 466 aaKnown RBP eCLIP14.06□□□□□ -0.16
SYNE2-208ENST00000553289 SCAPERQ9BY12 1400 aa14.06□□□□□ -0.16
SYNE2-208ENST00000553289 A0A0U1RQG5 324 aaPredicted RBP14.06□□□□□ -0.16
SYNE2-208ENST00000553289 TNNT3P45378 269 aaPredicted RBP14.06□□□□□ -0.16
SYNE2-208ENST00000553289 FKBP5Q13451 457 aaPredicted RBP14.06□□□□□ -0.16
SYNE2-208ENST00000553289 ANO2Q9NQ90 1003 aa14.06□□□□□ -0.16
SYNE2-208ENST00000553289 EIF2S2P20042 333 aaKnown RBP14.06□□□□□ -0.16
SYNE2-208ENST00000553289 HOOK1Q9UJC3 728 aaKnown RBP14.06□□□□□ -0.16
SYNE2-208ENST00000553289 HFM1A2PYH4 1435 aa14.05□□□□□ -0.16
SYNE2-208ENST00000553289 EVA1CP58658 441 aa14.05□□□□□ -0.16
SYNE2-208ENST00000553289 OSCARQ8IYS5 282 aa14.05□□□□□ -0.16
SYNE2-208ENST00000553289 NOL10Q9BSC4 688 aaKnown RBP14.05□□□□□ -0.16
SYNE2-208ENST00000553289 MCTP1Q6DN14 999 aa14.04□□□□□ -0.16
SYNE2-208ENST00000553289 CCDC47Q96A33 483 aaKnown RBP14.04□□□□□ -0.16
SYNE2-208ENST00000553289 CPLX1O14810 134 aa14.04□□□□□ -0.16
SYNE2-208ENST00000553289 TRDNQ13061 729 aa14.04□□□□□ -0.16
SYNE2-208ENST00000553289 HSP90AA2PQ14568 343 aaPredicted RBP14.04□□□□□ -0.16
SYNE2-208ENST00000553289 EFCAB5A4FU69 1503 aa14.04□□□□□ -0.16
SYNE2-208ENST00000553289 GPS2Q13227 327 aa14.04□□□□□ -0.16
SYNE2-208ENST00000553289 CCDC70Q6NSX1 233 aa14.04□□□□□ -0.16
SYNE2-208ENST00000553289 ARID3AQ99856 593 aa14.04□□□□□ -0.16
SYNE2-208ENST00000553289 TSPYL4Q9UJ04 414 aa14.04□□□□□ -0.16
SYNE2-208ENST00000553289 C22orf23Q9BZE7 217 aa14.03□□□□□ -0.16
SYNE2-208ENST00000553289 ANKRD20A12PQ8NF67 263 aa14.03□□□□□ -0.16
SYNE2-208ENST00000553289 ZNF644Q9H582 1327 aaPredicted RBP14.03□□□□□ -0.16
SYNE2-208ENST00000553289 PRDM2Q13029 1718 aa14.03□□□□□ -0.16
SYNE2-208ENST00000553289 CDC45O75419 566 aa14.03□□□□□ -0.16
SYNE2-208ENST00000553289 PSME1Q06323 249 aa14.02□□□□□ -0.16
SYNE2-208ENST00000553289 PES1O00541 588 aaKnown RBP14.02□□□□□ -0.17
SYNE2-208ENST00000553289 SMC3Q9UQE7 1217 aa14.02□□□□□ -0.17
SYNE2-208ENST00000553289 GRIN2BQ13224 1484 aa14.01□□□□□ -0.17
SYNE2-208ENST00000553289 IPO7O95373 1038 aaKnown RBP14.01□□□□□ -0.17
SYNE2-208ENST00000553289 VPS53Q5VIR6 699 aa14□□□□□ -0.17
SYNE2-208ENST00000553289 ZBTB4Q9P1Z0 1013 aaPredicted RBP14□□□□□ -0.17
SYNE2-208ENST00000553289 WWC1Q8IX03 1113 aa14□□□□□ -0.17
SYNE2-208ENST00000553289 EHBP1L1Q8N3D4 1523 aa14□□□□□ -0.17
SYNE2-208ENST00000553289 BICD2Q8TD16 824 aa14□□□□□ -0.17
SYNE2-208ENST00000553289 NINLQ9Y2I6 1382 aa14□□□□□ -0.17
SYNE2-208ENST00000553289 SYNJ2O15056 1496 aa14□□□□□ -0.17
SYNE2-208ENST00000553289 LNPKQ9C0E8 428 aa13.99□□□□□ -0.17
SYNE2-208ENST00000553289 PLEKHH2Q8IVE3 1493 aa13.99□□□□□ -0.17
SYNE2-208ENST00000553289 ARHGAP5Q13017 1502 aa13.99□□□□□ -0.17
SYNE2-208ENST00000553289 GNAI3P08754 354 aa13.98□□□□□ -0.17
SYNE2-208ENST00000553289 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.98□□□□□ -0.17
SYNE2-208ENST00000553289 RAPGEF4Q8WZA2 1011 aa13.98□□□□□ -0.17
SYNE2-208ENST00000553289 FOXD4L6Q3SYB3 417 aaPredicted RBP13.98□□□□□ -0.17
SYNE2-208ENST00000553289 FOXD4L3Q6VB84 417 aaPredicted RBP13.98□□□□□ -0.17
SYNE2-208ENST00000553289 ADAMTS8Q9UP79 889 aa13.98□□□□□ -0.17
SYNE2-208ENST00000553289 ERICH2A1L162 156 aa13.98□□□□□ -0.17
SYNE2-208ENST00000553289 PDE3AQ14432 1141 aa13.98□□□□□ -0.17
SYNE2-208ENST00000553289 APPP05067 770 aa13.98□□□□□ -0.17
SYNE2-208ENST00000553289 UBTFL1P0CB47 393 aaPredicted RBP13.97□□□□□ -0.17
SYNE2-208ENST00000553289 SASS6Q6UVJ0 657 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms