RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 DHX57Q6P158 1386 aaKnown RBP8.69□□□□□ -1.02
CHMP4A-210ENST00000552620 CADPSQ9ULU8 1353 aa8.69□□□□□ -1.02
CHMP4A-210ENST00000552620 CUX2O14529 1486 aa8.69□□□□□ -1.02
CHMP4A-210ENST00000552620 OATP04181 439 aa8.68□□□□□ -1.02
CHMP4A-210ENST00000552620 KANK4Q5T7N3 995 aaPredicted RBP8.68□□□□□ -1.02
CHMP4A-210ENST00000552620 GPR153Q6NV75 609 aa8.68□□□□□ -1.02
CHMP4A-210ENST00000552620 CDAN1Q8IWY9 1227 aa8.68□□□□□ -1.02
CHMP4A-210ENST00000552620 PRDM2Q13029 1718 aa8.68□□□□□ -1.02
CHMP4A-210ENST00000552620 C6orf132Q5T0Z8 1188 aa8.67□□□□□ -1.02
CHMP4A-210ENST00000552620 ARHGAP35Q9NRY4 1499 aa8.67□□□□□ -1.02
CHMP4A-210ENST00000552620 CARMIL1Q5VZK9 1371 aa8.66□□□□□ -1.02
CHMP4A-210ENST00000552620 CCNB3Q8WWL7 1395 aa8.66□□□□□ -1.02
CHMP4A-210ENST00000552620 FAM205CA6NFA0 338 aa8.66□□□□□ -1.02
CHMP4A-210ENST00000552620 NUDT7P0C024 238 aa8.66□□□□□ -1.02
CHMP4A-210ENST00000552620 MDM2Q00987 491 aaPredicted RBP8.66□□□□□ -1.02
CHMP4A-210ENST00000552620 ARSIQ5FYB1 569 aa8.66□□□□□ -1.02
CHMP4A-210ENST00000552620 ARXQ96QS3 562 aa8.66□□□□□ -1.02
CHMP4A-210ENST00000552620 RBM27Q9P2N5 1060 aaKnown RBP8.66□□□□□ -1.02
CHMP4A-210ENST00000552620 MS4A1P11836 297 aa8.65□□□□□ -1.02
CHMP4A-210ENST00000552620 PCMTD1Q96MG8 357 aaPredicted RBP8.65□□□□□ -1.02
CHMP4A-210ENST00000552620 HS3ST6Q96QI5 342 aa8.65□□□□□ -1.02
CHMP4A-210ENST00000552620 PADI6Q6TGC4 694 aa8.64□□□□□ -1.03
CHMP4A-210ENST00000552620 METTL3Q86U44 580 aaKnown RBP8.64□□□□□ -1.03
CHMP4A-210ENST00000552620 ERBB3P21860 1342 aa8.63□□□□□ -1.03
CHMP4A-210ENST00000552620 TMUB1Q9BVT8 246 aa8.63□□□□□ -1.03
CHMP4A-210ENST00000552620 REPIN1Q9BWE0 567 aaKnown RBP8.63□□□□□ -1.03
CHMP4A-210ENST00000552620 PLSCR2Q9NRY7 297 aa8.63□□□□□ -1.03
CHMP4A-210ENST00000552620 FHAD1B1AJZ9 1412 aa8.63□□□□□ -1.03
CHMP4A-210ENST00000552620 POTEB3A0JP26 581 aa8.62□□□□□ -1.03
CHMP4A-210ENST00000552620 PSDA5PKW4 1024 aaPredicted RBP8.62□□□□□ -1.03
CHMP4A-210ENST00000552620 SSTR3P32745 418 aaPredicted RBP8.62□□□□□ -1.03
CHMP4A-210ENST00000552620 FLIIQ13045 1269 aa8.62□□□□□ -1.03
CHMP4A-210ENST00000552620 POTEBQ6S5H4 581 aa8.62□□□□□ -1.03
CHMP4A-210ENST00000552620 KHSRPQ92945 711 aaKnown RBP eCLIP8.62□□□□□ -1.03
CHMP4A-210ENST00000552620 RSPH6AQ9H0K4 717 aa8.62□□□□□ -1.03
CHMP4A-210ENST00000552620 ADGRG1Q9Y653 693 aa8.62□□□□□ -1.03
CHMP4A-210ENST00000552620 PRSS12P56730 875 aa8.61□□□□□ -1.03
CHMP4A-210ENST00000552620 SH3D19Q5HYK7 790 aa8.61□□□□□ -1.03
CHMP4A-210ENST00000552620 PPP4R3BQ5MIZ7 849 aa8.61□□□□□ -1.03
CHMP4A-210ENST00000552620 RBM46Q8TBY0 533 aaKnown RBP8.61□□□□□ -1.03
CHMP4A-210ENST00000552620 PHOX2BQ99453 314 aa8.61□□□□□ -1.03
CHMP4A-210ENST00000552620 ADAM33Q9BZ11 813 aa8.61□□□□□ -1.03
CHMP4A-210ENST00000552620 ZMYND15Q9H091 742 aa8.61□□□□□ -1.03
CHMP4A-210ENST00000552620 FGD5Q6ZNL6 1462 aa8.6□□□□□ -1.03
CHMP4A-210ENST00000552620 TTC13Q8NBP0 860 aa8.6□□□□□ -1.03
CHMP4A-210ENST00000552620 PXYLP1Q8TE99 480 aa8.6□□□□□ -1.03
CHMP4A-210ENST00000552620 FAM161AQ3B820 660 aa8.59□□□□□ -1.03
CHMP4A-210ENST00000552620 CDCA7LQ96GN5 454 aa8.59□□□□□ -1.03
CHMP4A-210ENST00000552620 FAM217BQ9NTX9 383 aaPredicted RBP8.59□□□□□ -1.03
CHMP4A-210ENST00000552620 TIAM1Q13009 1591 aa8.58□□□□□ -1.04
CHMP4A-210ENST00000552620 VARS2Q5ST30 1063 aaKnown RBP8.58□□□□□ -1.04
CHMP4A-210ENST00000552620 BEGAINQ9BUH8 593 aa8.58□□□□□ -1.04
CHMP4A-210ENST00000552620 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.58□□□□□ -1.04
CHMP4A-210ENST00000552620 LRRC9Q6ZRR7 1453 aa8.57□□□□□ -1.04
CHMP4A-210ENST00000552620 SETD5Q9C0A6 1442 aa8.57□□□□□ -1.04
CHMP4A-210ENST00000552620 YTHDC1Q96MU7 727 aaKnown RBP8.57□□□□□ -1.04
CHMP4A-210ENST00000552620 LHX6Q9UPM6 363 aa8.57□□□□□ -1.04
CHMP4A-210ENST00000552620 MYT1Q01538 1121 aa8.56□□□□□ -1.04
CHMP4A-210ENST00000552620 SKIV2LQ15477 1246 aaKnown RBP8.56□□□□□ -1.04
CHMP4A-210ENST00000552620 HOMEZQ8IX15 550 aa8.56□□□□□ -1.04
CHMP4A-210ENST00000552620 BCL2L12Q9HB09 334 aa8.56□□□□□ -1.04
CHMP4A-210ENST00000552620 ATP1B4Q9UN42 357 aaPredicted RBP8.56□□□□□ -1.04
CHMP4A-210ENST00000552620 FANCD2Q9BXW9 1451 aa8.56□□□□□ -1.04
CHMP4A-210ENST00000552620 ABCA10Q8WWZ4 1543 aa8.55□□□□□ -1.04
CHMP4A-210ENST00000552620 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.55□□□□□ -1.04
CHMP4A-210ENST00000552620 PTPREP23469 700 aa8.55□□□□□ -1.04
CHMP4A-210ENST00000552620 DIXDC1Q155Q3 683 aa8.55□□□□□ -1.04
CHMP4A-210ENST00000552620 RAB3GAP2Q9H2M9 1393 aa8.55□□□□□ -1.04
CHMP4A-210ENST00000552620 AQRO60306 1485 aaKnown RBP eCLIP8.55□□□□□ -1.04
CHMP4A-210ENST00000552620 EFCAB5A4FU69 1503 aa8.54□□□□□ -1.04
CHMP4A-210ENST00000552620 DNMBPQ6XZF7 1577 aa8.54□□□□□ -1.04
CHMP4A-210ENST00000552620 PPP1R3GB7ZBB8 358 aa8.54□□□□□ -1.04
CHMP4A-210ENST00000552620 NLRP7Q8WX94 980 aa8.54□□□□□ -1.04
CHMP4A-210ENST00000552620 CC2D2AQ9P2K1 1620 aa8.53□□□□□ -1.04
CHMP4A-210ENST00000552620 CASKIN1Q8WXD9 1431 aa8.53□□□□□ -1.04
CHMP4A-210ENST00000552620 NBPF26B4DH59 902 aa8.52□□□□□ -1.05
CHMP4A-210ENST00000552620 ITGAEP38570 1179 aa8.52□□□□□ -1.05
CHMP4A-210ENST00000552620 ZNF687Q8N1G0 1237 aa8.52□□□□□ -1.05
CHMP4A-210ENST00000552620 KCNH8Q96L42 1107 aa8.52□□□□□ -1.05
CHMP4A-210ENST00000552620 KRTAP3-3Q9BYR6 98 aa8.52□□□□□ -1.05
CHMP4A-210ENST00000552620 KRTAP3-2Q9BYR7 98 aa8.52□□□□□ -1.05
CHMP4A-210ENST00000552620 FYCO1Q9BQS8 1478 aa8.51□□□□□ -1.05
CHMP4A-210ENST00000552620 PHLDB1Q86UU1 1377 aa8.51□□□□□ -1.05
CHMP4A-210ENST00000552620 CUL7Q14999 1698 aa8.51□□□□□ -1.05
CHMP4A-210ENST00000552620 COL9A1P20849 921 aa8.51□□□□□ -1.05
CHMP4A-210ENST00000552620 TOPBP1Q92547 1522 aa8.5□□□□□ -1.05
CHMP4A-210ENST00000552620 CFAP43Q8NDM7 1665 aa8.5□□□□□ -1.05
CHMP4A-210ENST00000552620 RCCD1A6NED2 376 aa8.5□□□□□ -1.05
CHMP4A-210ENST00000552620 FMN1Q68DA7 1419 aa8.5□□□□□ -1.05
CHMP4A-210ENST00000552620 PACS2Q86VP3 889 aa8.5□□□□□ -1.05
CHMP4A-210ENST00000552620 SULF1Q8IWU6 871 aa8.5□□□□□ -1.05
CHMP4A-210ENST00000552620 MAPKBP1O60336 1514 aa8.49□□□□□ -1.05
CHMP4A-210ENST00000552620 ONECUT3O60422 494 aaPredicted RBP8.49□□□□□ -1.05
CHMP4A-210ENST00000552620 DNAJB2P25686 324 aa8.49□□□□□ -1.05
CHMP4A-210ENST00000552620 CLK2P49760 499 aaKnown RBP8.49□□□□□ -1.05
CHMP4A-210ENST00000552620 FAM50AQ14320 339 aaKnown RBP8.49□□□□□ -1.05
CHMP4A-210ENST00000552620 MYSM1Q5VVJ2 828 aa8.49□□□□□ -1.05
CHMP4A-210ENST00000552620 EYA1Q99502 592 aa8.49□□□□□ -1.05
CHMP4A-210ENST00000552620 POLR3EQ9NVU0 708 aa8.49□□□□□ -1.05
CHMP4A-210ENST00000552620 POLA1P09884 1462 aaPredicted RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms