RNA–Protein interactions for RNA: ENST00000551630.1

PTCH1-224, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 539 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-224ENST00000551630 NUTM2DQ5VT03 806 aaPredicted RBP22.36■■□□□ 1.17
PTCH1-224ENST00000551630 TXNDC2Q86VQ3 553 aa22.36■■□□□ 1.17
PTCH1-224ENST00000551630 NEXMIFQ5QGS0 1516 aa22.35■■□□□ 1.17
PTCH1-224ENST00000551630 RGL3Q3MIN7 710 aa22.34■■□□□ 1.17
PTCH1-224ENST00000551630 EID1Q9Y6B2 187 aa22.33■■□□□ 1.17
PTCH1-224ENST00000551630 NPHP4O75161 1426 aaPredicted RBP22.31■■□□□ 1.16
PTCH1-224ENST00000551630 PPP1R15AO75807 674 aaPredicted RBP22.31■■□□□ 1.16
PTCH1-224ENST00000551630 SIN3AQ96ST3 1273 aa22.31■■□□□ 1.16
PTCH1-224ENST00000551630 SENP3Q9H4L4 574 aaPredicted RBP22.31■■□□□ 1.16
PTCH1-224ENST00000551630 MED14O60244 1454 aa22.3■■□□□ 1.16
PTCH1-224ENST00000551630 IQGAP1P46940 1657 aa22.3■■□□□ 1.16
PTCH1-224ENST00000551630 PPLO60437 1756 aa22.28■■□□□ 1.16
PTCH1-224ENST00000551630 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.28■■□□□ 1.16
PTCH1-224ENST00000551630 IFT172Q9UG01 1749 aa22.26■■□□□ 1.15
PTCH1-224ENST00000551630 HDGFP51858 240 aaKnown RBP22.26■■□□□ 1.15
PTCH1-224ENST00000551630 NEUROD1Q13562 356 aa22.26■■□□□ 1.15
PTCH1-224ENST00000551630 RPGRIP1LQ68CZ1 1315 aa22.26■■□□□ 1.15
PTCH1-224ENST00000551630 PLEKHG1Q9ULL1 1385 aa22.25■■□□□ 1.15
PTCH1-224ENST00000551630 DMRT2Q9Y5R5 561 aa22.24■■□□□ 1.15
PTCH1-224ENST00000551630 BCANQ96GW7 911 aa22.23■■□□□ 1.15
PTCH1-224ENST00000551630 CCER1Q8TC90 406 aaPredicted RBP22.22■■□□□ 1.15
PTCH1-224ENST00000551630 ADGRF5Q8IZF2 1346 aa22.21■■□□□ 1.15
PTCH1-224ENST00000551630 NRXN3Q9Y4C0 1643 aa22.2■■□□□ 1.14
PTCH1-224ENST00000551630 VGFO15240 615 aaPredicted RBP22.19■■□□□ 1.14
PTCH1-224ENST00000551630 SLC26A8Q96RN1 970 aa22.19■■□□□ 1.14
PTCH1-224ENST00000551630 ADAMTS13Q76LX8 1427 aa22.19■■□□□ 1.14
PTCH1-224ENST00000551630 MYOM2P54296 1465 aa22.19■■□□□ 1.14
PTCH1-224ENST00000551630 SETBP1Q9Y6X0 1596 aa22.19■■□□□ 1.14
PTCH1-224ENST00000551630 DCAF11Q8TEB1 546 aa22.17■■□□□ 1.14
PTCH1-224ENST00000551630 KDM2AQ9Y2K7 1162 aa22.17■■□□□ 1.14
PTCH1-224ENST00000551630 ZNF335Q9H4Z2 1342 aaPredicted RBP22.14■■□□□ 1.14
PTCH1-224ENST00000551630 CLSPNQ9HAW4 1339 aa22.14■■□□□ 1.14
PTCH1-224ENST00000551630 DIP2AQ14689 1571 aa22.14■■□□□ 1.13
PTCH1-224ENST00000551630 NRXN1Q9ULB1 1477 aa22.14■■□□□ 1.13
PTCH1-224ENST00000551630 PIK3C2GO75747 1445 aa22.14■■□□□ 1.13
PTCH1-224ENST00000551630 L3MBTL2Q969R5 705 aa22.13■■□□□ 1.13
PTCH1-224ENST00000551630 TONSLQ96HA7 1378 aa22.12■■□□□ 1.13
PTCH1-224ENST00000551630 ALKQ9UM73 1620 aa22.11■■□□□ 1.13
PTCH1-224ENST00000551630 SETD1AO15047 1707 aaKnown RBP22.1■■□□□ 1.13
PTCH1-224ENST00000551630 TBX22Q9Y458 520 aa22.1■■□□□ 1.13
PTCH1-224ENST00000551630 METP08581 1390 aa22.08■■□□□ 1.12
PTCH1-224ENST00000551630 STRCP1A6NGW2 1772 aa22.07■■□□□ 1.12
PTCH1-224ENST00000551630 LTBP4Q8N2S1 1624 aa22.06■■□□□ 1.12
PTCH1-224ENST00000551630 ASXL1Q8IXJ9 1541 aa22.06■■□□□ 1.12
PTCH1-224ENST00000551630 NWD1Q149M9 1564 aa22.05■■□□□ 1.12
PTCH1-224ENST00000551630 CFAP70Q5T0N1 1121 aa22.05■■□□□ 1.12
PTCH1-224ENST00000551630 STAC3Q96MF2 364 aa22.05■■□□□ 1.12
PTCH1-224ENST00000551630 PRAG1Q86YV5 1406 aa22.05■■□□□ 1.12
PTCH1-224ENST00000551630 PTPRUQ92729 1446 aa22.05■■□□□ 1.12
PTCH1-224ENST00000551630 LAMC1P11047 1609 aa22.03■■□□□ 1.12
PTCH1-224ENST00000551630 PIK3R4Q99570 1358 aa22.02■■□□□ 1.12
PTCH1-224ENST00000551630 CHD2O14647 1828 aaKnown RBP22.02■■□□□ 1.12
PTCH1-224ENST00000551630 KCNA6P17658 529 aa22.02■■□□□ 1.12
PTCH1-224ENST00000551630 C14orf93Q9H972 538 aaKnown RBP22.02■■□□□ 1.12
PTCH1-224ENST00000551630 TMEM132EQ6IEE7 984 aa22■■□□□ 1.11
PTCH1-224ENST00000551630 CPS1P31327 1500 aa22■■□□□ 1.11
PTCH1-224ENST00000551630 XRN1Q8IZH2 1706 aaKnown RBP22■■□□□ 1.11
PTCH1-224ENST00000551630 AMOTL2Q9Y2J4 779 aa21.98■■□□□ 1.11
PTCH1-224ENST00000551630 NKTRP30414 1462 aaKnown RBP21.97■■□□□ 1.11
PTCH1-224ENST00000551630 ADGRB1O14514 1584 aa21.97■■□□□ 1.11
PTCH1-224ENST00000551630 NBPF8Q3BBV2 869 aa21.96■■□□□ 1.11
PTCH1-224ENST00000551630 LRRC7Q96NW7 1537 aa21.96■■□□□ 1.11
PTCH1-224ENST00000551630 STK26Q9P289 416 aa21.95■■□□□ 1.1
PTCH1-224ENST00000551630 KIAA1210Q9ULL0 1709 aa21.94■■□□□ 1.1
PTCH1-224ENST00000551630 RBM33Q96EV2 1170 aaKnown RBP21.94■■□□□ 1.1
PTCH1-224ENST00000551630 LRPPRCP42704 1394 aaKnown RBP21.94■■□□□ 1.1
PTCH1-224ENST00000551630 YTHDC2Q9H6S0 1430 aaKnown RBP21.94■■□□□ 1.1
PTCH1-224ENST00000551630 TRPM1Q7Z4N2 1603 aa21.94■■□□□ 1.1
PTCH1-224ENST00000551630 NBPF1Q3BBV0 1214 aa21.92■■□□□ 1.1
PTCH1-224ENST00000551630 PROSER2Q86WR7 435 aaPredicted RBP21.92■■□□□ 1.1
PTCH1-224ENST00000551630 TMEM94Q12767 1356 aa21.91■■□□□ 1.1
PTCH1-224ENST00000551630 ROBO2Q9HCK4 1378 aa21.91■■□□□ 1.1
PTCH1-224ENST00000551630 TIMELESSQ9UNS1 1208 aa21.91■■□□□ 1.1
PTCH1-224ENST00000551630 KNDC1Q76NI1 1749 aa21.91■■□□□ 1.1
PTCH1-224ENST00000551630 PTCH1Q13635 1447 aa21.9■■□□□ 1.1
PTCH1-224ENST00000551630 CERKQ8TCT0 537 aa21.9■■□□□ 1.1
PTCH1-224ENST00000551630 TECPR2O15040 1411 aa21.89■■□□□ 1.09
PTCH1-224ENST00000551630 ABCC11Q96J66 1382 aa21.88■■□□□ 1.09
PTCH1-224ENST00000551630 XIRP1Q702N8 1843 aaKnown RBP21.88■■□□□ 1.09
PTCH1-224ENST00000551630 RALGAPBQ86X10 1494 aa21.88■■□□□ 1.09
PTCH1-224ENST00000551630 ROCK2O75116 1388 aaKnown RBP21.87■■□□□ 1.09
PTCH1-224ENST00000551630 TRAK1Q9UPV9 953 aa21.86■■□□□ 1.09
PTCH1-224ENST00000551630 PLEKHH1Q9ULM0 1364 aa21.85■■□□□ 1.09
PTCH1-224ENST00000551630 DLC1Q96QB1 1528 aa21.84■■□□□ 1.09
PTCH1-224ENST00000551630 WAPLQ7Z5K2 1190 aa21.83■■□□□ 1.09
PTCH1-224ENST00000551630 IQSEC2Q5JU85 1478 aa21.83■■□□□ 1.08
PTCH1-224ENST00000551630 C14orf37Q86TY3 774 aa21.82■■□□□ 1.08
PTCH1-224ENST00000551630 ARHGEF28Q8N1W1 1705 aaKnown RBP21.82■■□□□ 1.08
PTCH1-224ENST00000551630 GPRASP1Q5JY77 1395 aa21.81■■□□□ 1.08
PTCH1-224ENST00000551630 FAM135BQ49AJ0 1406 aa21.8■■□□□ 1.08
PTCH1-224ENST00000551630 NALCNQ8IZF0 1738 aa21.8■■□□□ 1.08
PTCH1-224ENST00000551630 PRAM1Q96QH2 718 aa21.8■■□□□ 1.08
PTCH1-224ENST00000551630 NCOA3Q9Y6Q9 1424 aa21.8■■□□□ 1.08
PTCH1-224ENST00000551630 SAFB2Q14151 953 aaKnown RBP eCLIP21.79■■□□□ 1.08
PTCH1-224ENST00000551630 ADGRL3Q9HAR2 1447 aa21.79■■□□□ 1.08
PTCH1-224ENST00000551630 MSH6P52701 1360 aa21.78■■□□□ 1.08
PTCH1-224ENST00000551630 CARD11Q9BXL7 1154 aa21.78■■□□□ 1.08
PTCH1-224ENST00000551630 SIRT1Q96EB6 747 aa21.77■■□□□ 1.08
PTCH1-224ENST00000551630 POGKQ9P215 609 aa21.77■■□□□ 1.08
PTCH1-224ENST00000551630 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms