RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 ZFYVE9O95405 1425 aa19.85■□□□□ 0.77
PTCH1-221ENST00000550914 ROCK1Q13464 1354 aa19.85■□□□□ 0.77
PTCH1-221ENST00000550914 TMEM131LA2VDJ0 1609 aa19.85■□□□□ 0.77
PTCH1-221ENST00000550914 SLC26A8Q96RN1 970 aa19.85■□□□□ 0.77
PTCH1-221ENST00000550914 CHD2O14647 1828 aaKnown RBP19.83■□□□□ 0.77
PTCH1-221ENST00000550914 HDGFP51858 240 aaKnown RBP19.83■□□□□ 0.77
PTCH1-221ENST00000550914 PLEKHG1Q9ULL1 1385 aa19.83■□□□□ 0.76
PTCH1-221ENST00000550914 PROSER2Q86WR7 435 aaPredicted RBP19.82■□□□□ 0.76
PTCH1-221ENST00000550914 E9PCH4 1651 aa19.81■□□□□ 0.76
PTCH1-221ENST00000550914 IQGAP3Q86VI3 1631 aa19.81■□□□□ 0.76
PTCH1-221ENST00000550914 RIMS2Q9UQ26 1411 aa19.8■□□□□ 0.76
PTCH1-221ENST00000550914 SENP3Q9H4L4 574 aaPredicted RBP19.8■□□□□ 0.76
PTCH1-221ENST00000550914 ROBO1Q9Y6N7 1651 aa19.8■□□□□ 0.76
PTCH1-221ENST00000550914 BCANQ96GW7 911 aa19.78■□□□□ 0.76
PTCH1-221ENST00000550914 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.77■□□□□ 0.76
PTCH1-221ENST00000550914 MSH6P52701 1360 aa19.77■□□□□ 0.76
PTCH1-221ENST00000550914 PPP1R15AO75807 674 aaPredicted RBP19.76■□□□□ 0.75
PTCH1-221ENST00000550914 TBX22Q9Y458 520 aa19.76■□□□□ 0.75
PTCH1-221ENST00000550914 NCOA3Q9Y6Q9 1424 aa19.76■□□□□ 0.75
PTCH1-221ENST00000550914 DIP2AQ14689 1571 aa19.75■□□□□ 0.75
PTCH1-221ENST00000550914 PIK3R4Q99570 1358 aa19.72■□□□□ 0.75
PTCH1-221ENST00000550914 RBM33Q96EV2 1170 aaKnown RBP19.72■□□□□ 0.75
PTCH1-221ENST00000550914 NUP155O75694 1391 aa19.71■□□□□ 0.75
PTCH1-221ENST00000550914 SLAIN2Q9P270 581 aa19.71■□□□□ 0.75
PTCH1-221ENST00000550914 ADAMTS13Q76LX8 1427 aa19.7■□□□□ 0.74
PTCH1-221ENST00000550914 RGS17Q9UGC6 210 aaPredicted RBP19.7■□□□□ 0.74
PTCH1-221ENST00000550914 PHLPP1O60346 1717 aa19.69■□□□□ 0.74
PTCH1-221ENST00000550914 CHGAP10645 457 aaKnown RBP19.69■□□□□ 0.74
PTCH1-221ENST00000550914 SPHKAPQ2M3C7 1700 aa19.67■□□□□ 0.74
PTCH1-221ENST00000550914 TRPM2O94759 1503 aa19.66■□□□□ 0.74
PTCH1-221ENST00000550914 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.65■□□□□ 0.74
PTCH1-221ENST00000550914 JCADQ9P266 1359 aa19.63■□□□□ 0.73
PTCH1-221ENST00000550914 ITGAEP38570 1179 aa19.63■□□□□ 0.73
PTCH1-221ENST00000550914 COL16A1Q07092 1604 aaPredicted RBP19.62■□□□□ 0.73
PTCH1-221ENST00000550914 NUTM2DQ5VT03 806 aaPredicted RBP19.62■□□□□ 0.73
PTCH1-221ENST00000550914 CADPS2Q86UW7 1296 aa19.62■□□□□ 0.73
PTCH1-221ENST00000550914 C19orf44Q9H6X5 657 aa19.62■□□□□ 0.73
PTCH1-221ENST00000550914 SETBP1Q9Y6X0 1596 aa19.61■□□□□ 0.73
PTCH1-221ENST00000550914 C14orf37Q86TY3 774 aa19.6■□□□□ 0.73
PTCH1-221ENST00000550914 NRXN3Q9Y4C0 1643 aa19.6■□□□□ 0.73
PTCH1-221ENST00000550914 AHDC1Q5TGY3 1603 aaPredicted RBP19.59■□□□□ 0.73
PTCH1-221ENST00000550914 XRN1Q8IZH2 1706 aaKnown RBP19.59■□□□□ 0.73
PTCH1-221ENST00000550914 ATF3P18847 181 aa19.58■□□□□ 0.72
PTCH1-221ENST00000550914 AMOTL2Q9Y2J4 779 aa19.58■□□□□ 0.72
PTCH1-221ENST00000550914 DCCP43146 1447 aa19.58■□□□□ 0.72
PTCH1-221ENST00000550914 PTPRUQ92729 1446 aa19.58■□□□□ 0.72
PTCH1-221ENST00000550914 POTEAQ6S8J7 498 aa19.57■□□□□ 0.72
PTCH1-221ENST00000550914 RRBP1Q9P2E9 1410 aaKnown RBP19.57■□□□□ 0.72
PTCH1-221ENST00000550914 SHPRHQ149N8 1683 aa19.56■□□□□ 0.72
PTCH1-221ENST00000550914 KIF1BO60333 1816 aa19.55■□□□□ 0.72
PTCH1-221ENST00000550914 SPATA31A6Q5VVP1 1343 aa19.54■□□□□ 0.72
PTCH1-221ENST00000550914 PPARGC1BQ86YN6 1023 aaKnown RBP19.54■□□□□ 0.72
PTCH1-221ENST00000550914 CLTCL1P53675 1640 aa19.54■□□□□ 0.72
PTCH1-221ENST00000550914 NAIPQ13075 1403 aa19.52■□□□□ 0.72
PTCH1-221ENST00000550914 NEXMIFQ5QGS0 1516 aa19.52■□□□□ 0.72
PTCH1-221ENST00000550914 ZNF326Q5BKZ1 582 aaKnown RBP19.52■□□□□ 0.72
PTCH1-221ENST00000550914 METP08581 1390 aa19.49■□□□□ 0.71
PTCH1-221ENST00000550914 BRINP3Q76B58 766 aa19.49■□□□□ 0.71
PTCH1-221ENST00000550914 LRP6O75581 1613 aa19.49■□□□□ 0.71
PTCH1-221ENST00000550914 ASXL1Q8IXJ9 1541 aa19.47■□□□□ 0.71
PTCH1-221ENST00000550914 MST1RQ04912 1400 aa19.47■□□□□ 0.71
PTCH1-221ENST00000550914 NHSL1Q5SYE7 1610 aa19.47■□□□□ 0.71
PTCH1-221ENST00000550914 ADGRL3Q9HAR2 1447 aa19.46■□□□□ 0.71
PTCH1-221ENST00000550914 HFM1A2PYH4 1435 aa19.45■□□□□ 0.7
PTCH1-221ENST00000550914 SETD5Q9C0A6 1442 aa19.44■□□□□ 0.7
PTCH1-221ENST00000550914 MEX3CQ5U5Q3 659 aaKnown RBP19.44■□□□□ 0.7
PTCH1-221ENST00000550914 ZNF772Q68DY9 489 aaPredicted RBP19.44■□□□□ 0.7
PTCH1-221ENST00000550914 NALCNQ8IZF0 1738 aa19.44■□□□□ 0.7
PTCH1-221ENST00000550914 SETD1AO15047 1707 aaKnown RBP19.43■□□□□ 0.7
PTCH1-221ENST00000550914 VGFO15240 615 aaPredicted RBP19.42■□□□□ 0.7
PTCH1-221ENST00000550914 PTCH1Q13635 1447 aa19.42■□□□□ 0.7
PTCH1-221ENST00000550914 PRAG1Q86YV5 1406 aa19.42■□□□□ 0.7
PTCH1-221ENST00000550914 RPGRIP1LQ68CZ1 1315 aa19.41■□□□□ 0.7
PTCH1-221ENST00000550914 PPLO60437 1756 aa19.39■□□□□ 0.7
PTCH1-221ENST00000550914 LRRC59Q96AG4 307 aaKnown RBP19.39■□□□□ 0.69
PTCH1-221ENST00000550914 LAMC1P11047 1609 aa19.38■□□□□ 0.69
PTCH1-221ENST00000550914 TRIM52Q96A61 297 aa19.38■□□□□ 0.69
PTCH1-221ENST00000550914 SLC4A1APQ9BWU0 796 aaKnown RBP19.37■□□□□ 0.69
PTCH1-221ENST00000550914 C1orf167Q5SNV9 1468 aa19.35■□□□□ 0.69
PTCH1-221ENST00000550914 CDK12Q9NYV4 1490 aaPredicted RBP19.35■□□□□ 0.69
PTCH1-221ENST00000550914 ROBO2Q9HCK4 1378 aa19.33■□□□□ 0.69
PTCH1-221ENST00000550914 NUTM2BA6NNL0 878 aaPredicted RBP19.33■□□□□ 0.68
PTCH1-221ENST00000550914 NUTM2EB1AL46 878 aaPredicted RBP19.33■□□□□ 0.68
PTCH1-221ENST00000550914 NUTM2AQ8IVF1 878 aaPredicted RBP19.33■□□□□ 0.68
PTCH1-221ENST00000550914 PNPLA6Q8IY17 1366 aa19.32■□□□□ 0.68
PTCH1-221ENST00000550914 RXRBP28702 533 aa19.32■□□□□ 0.68
PTCH1-221ENST00000550914 AFF2P51816 1311 aa19.3■□□□□ 0.68
PTCH1-221ENST00000550914 DDX17Q92841 729 aaKnown RBP19.28■□□□□ 0.68
PTCH1-221ENST00000550914 SOS2Q07890 1332 aaPredicted RBP19.27■□□□□ 0.68
PTCH1-221ENST00000550914 CCDC144AA2RUR9 1427 aa19.27■□□□□ 0.68
PTCH1-221ENST00000550914 IFT172Q9UG01 1749 aa19.27■□□□□ 0.68
PTCH1-221ENST00000550914 CDC42BPGQ6DT37 1551 aa19.27■□□□□ 0.67
PTCH1-221ENST00000550914 UPF1Q92900 1129 aaKnown RBP eCLIP19.26■□□□□ 0.67
PTCH1-221ENST00000550914 SPATA31E1Q6ZUB1 1445 aa19.25■□□□□ 0.67
PTCH1-221ENST00000550914 ANKRD30BQ9BXX2 1392 aa19.24■□□□□ 0.67
PTCH1-221ENST00000550914 C8orf37Q96NL8 207 aa19.24■□□□□ 0.67
PTCH1-221ENST00000550914 ORAI2Q96SN7 254 aa19.24■□□□□ 0.67
PTCH1-221ENST00000550914 TECPR2O15040 1411 aa19.24■□□□□ 0.67
PTCH1-221ENST00000550914 COL22A1Q8NFW1 1626 aaPredicted RBP19.23■□□□□ 0.67
PTCH1-221ENST00000550914 ACIN1Q9UKV3 1341 aaKnown RBP19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms