RNA–Protein interactions for RNA: ENST00000550477.5

SMARCD1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 911 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-209ENST00000550477 FAM135BQ49AJ0 1406 aa35.37■■■■□ 3.25
SMARCD1-209ENST00000550477 CHGAP10645 457 aaKnown RBP35.36■■■■□ 3.25
SMARCD1-209ENST00000550477 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.36■■■■□ 3.25
SMARCD1-209ENST00000550477 ROCK1Q13464 1354 aa35.36■■■■□ 3.25
SMARCD1-209ENST00000550477 GCC2Q8IWJ2 1684 aa35.33■■■■□ 3.25
SMARCD1-209ENST00000550477 NKTRP30414 1462 aaKnown RBP35.32■■■■□ 3.24
SMARCD1-209ENST00000550477 PLEKHG1Q9ULL1 1385 aa35.31■■■■□ 3.24
SMARCD1-209ENST00000550477 MSH6P52701 1360 aa35.3■■■■□ 3.24
SMARCD1-209ENST00000550477 RIMS2Q9UQ26 1411 aa35.3■■■■□ 3.24
SMARCD1-209ENST00000550477 UNC13BO14795 1591 aa35.29■■■■□ 3.24
SMARCD1-209ENST00000550477 ZFYVE9O95405 1425 aa35.27■■■■□ 3.24
SMARCD1-209ENST00000550477 RBM33Q96EV2 1170 aaKnown RBP35.27■■■■□ 3.24
SMARCD1-209ENST00000550477 ITGAEP38570 1179 aa35.26■■■■□ 3.24
SMARCD1-209ENST00000550477 TBX22Q9Y458 520 aa35.26■■■■□ 3.24
SMARCD1-209ENST00000550477 NWD1Q149M9 1564 aa35.24■■■■□ 3.23
SMARCD1-209ENST00000550477 NUP155O75694 1391 aa35.24■■■■□ 3.23
SMARCD1-209ENST00000550477 MYO5BQ9ULV0 1848 aa35.23■■■■□ 3.23
SMARCD1-209ENST00000550477 TMEM131LA2VDJ0 1609 aa35.23■■■■□ 3.23
SMARCD1-209ENST00000550477 SLAIN2Q9P270 581 aa35.2■■■■□ 3.23
SMARCD1-209ENST00000550477 E9PCH4 1651 aa35.18■■■■□ 3.22
SMARCD1-209ENST00000550477 IQGAP3Q86VI3 1631 aa35.17■■■■□ 3.22
SMARCD1-209ENST00000550477 C14orf37Q86TY3 774 aa35.17■■■■□ 3.22
SMARCD1-209ENST00000550477 CHD2O14647 1828 aaKnown RBP35.16■■■■□ 3.22
SMARCD1-209ENST00000550477 ROBO1Q9Y6N7 1651 aa35.16■■■■□ 3.22
SMARCD1-209ENST00000550477 NCOA3Q9Y6Q9 1424 aa35.14■■■■□ 3.22
SMARCD1-209ENST00000550477 NUTM2DQ5VT03 806 aaPredicted RBP35.13■■■■□ 3.21
SMARCD1-209ENST00000550477 PIK3R4Q99570 1358 aa35.12■■■■□ 3.21
SMARCD1-209ENST00000550477 PPARGC1BQ86YN6 1023 aaKnown RBP35.1■■■■□ 3.21
SMARCD1-209ENST00000550477 DIP2AQ14689 1571 aa35.07■■■■□ 3.2
SMARCD1-209ENST00000550477 CADPS2Q86UW7 1296 aa35.06■■■■□ 3.2
SMARCD1-209ENST00000550477 RGS17Q9UGC6 210 aaPredicted RBP35.05■■■■□ 3.2
SMARCD1-209ENST00000550477 ATF3P18847 181 aa35.04■■■■□ 3.2
SMARCD1-209ENST00000550477 C19orf44Q9H6X5 657 aa35.04■■■■□ 3.2
SMARCD1-209ENST00000550477 ADAMTS13Q76LX8 1427 aa35.04■■■■□ 3.2
SMARCD1-209ENST00000550477 ZNF326Q5BKZ1 582 aaKnown RBP35.02■■■■□ 3.2
SMARCD1-209ENST00000550477 AMOTL2Q9Y2J4 779 aa35■■■■□ 3.19
SMARCD1-209ENST00000550477 JCADQ9P266 1359 aa35■■■■□ 3.19
SMARCD1-209ENST00000550477 PHLPP1O60346 1717 aa34.99■■■■□ 3.19
SMARCD1-209ENST00000550477 TRPM2O94759 1503 aa34.99■■■■□ 3.19
SMARCD1-209ENST00000550477 SPHKAPQ2M3C7 1700 aa34.92■■■■□ 3.18
SMARCD1-209ENST00000550477 POTEAQ6S8J7 498 aa34.89■■■■□ 3.18
SMARCD1-209ENST00000550477 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.89■■■■□ 3.18
SMARCD1-209ENST00000550477 SPATA31A6Q5VVP1 1343 aa34.86■■■■□ 3.17
SMARCD1-209ENST00000550477 RRBP1Q9P2E9 1410 aaKnown RBP34.84■■■■□ 3.17
SMARCD1-209ENST00000550477 MEX3CQ5U5Q3 659 aaKnown RBP34.83■■■■□ 3.17
SMARCD1-209ENST00000550477 PTPRUQ92729 1446 aa34.82■■■■□ 3.17
SMARCD1-209ENST00000550477 TRIM52Q96A61 297 aa34.81■■■■□ 3.16
SMARCD1-209ENST00000550477 SETBP1Q9Y6X0 1596 aa34.81■■■■□ 3.16
SMARCD1-209ENST00000550477 DCCP43146 1447 aa34.81■■■■□ 3.16
SMARCD1-209ENST00000550477 COL16A1Q07092 1604 aaPredicted RBP34.8■■■■□ 3.16
SMARCD1-209ENST00000550477 NAIPQ13075 1403 aa34.77■■■■□ 3.16
SMARCD1-209ENST00000550477 BRINP3Q76B58 766 aa34.76■■■■□ 3.16
SMARCD1-209ENST00000550477 AHDC1Q5TGY3 1603 aaPredicted RBP34.76■■■■□ 3.15
SMARCD1-209ENST00000550477 VGFO15240 615 aaPredicted RBP34.75■■■■□ 3.15
SMARCD1-209ENST00000550477 ZNF772Q68DY9 489 aaPredicted RBP34.75■■■■□ 3.15
SMARCD1-209ENST00000550477 KIF1BO60333 1816 aa34.74■■■■□ 3.15
SMARCD1-209ENST00000550477 NRXN3Q9Y4C0 1643 aa34.73■■■■□ 3.15
SMARCD1-209ENST00000550477 METP08581 1390 aa34.73■■■■□ 3.15
SMARCD1-209ENST00000550477 CLTCL1P53675 1640 aa34.71■■■■□ 3.15
SMARCD1-209ENST00000550477 XRN1Q8IZH2 1706 aaKnown RBP34.71■■■■□ 3.15
SMARCD1-209ENST00000550477 SLC4A1APQ9BWU0 796 aaKnown RBP34.69■■■■□ 3.14
SMARCD1-209ENST00000550477 NEXMIFQ5QGS0 1516 aa34.68■■■■□ 3.14
SMARCD1-209ENST00000550477 RPGRIP1LQ68CZ1 1315 aa34.67■■■■□ 3.14
SMARCD1-209ENST00000550477 LRRC59Q96AG4 307 aaKnown RBP34.66■■■■□ 3.14
SMARCD1-209ENST00000550477 SHPRHQ149N8 1683 aa34.66■■■■□ 3.14
SMARCD1-209ENST00000550477 HFM1A2PYH4 1435 aa34.65■■■■□ 3.14
SMARCD1-209ENST00000550477 MST1RQ04912 1400 aa34.64■■■■□ 3.14
SMARCD1-209ENST00000550477 NUTM2BA6NNL0 878 aaPredicted RBP34.63■■■■□ 3.13
SMARCD1-209ENST00000550477 NUTM2EB1AL46 878 aaPredicted RBP34.63■■■■□ 3.13
SMARCD1-209ENST00000550477 NUTM2AQ8IVF1 878 aaPredicted RBP34.63■■■■□ 3.13
SMARCD1-209ENST00000550477 ADGRL3Q9HAR2 1447 aa34.63■■■■□ 3.13
SMARCD1-209ENST00000550477 ASXL1Q8IXJ9 1541 aa34.61■■■■□ 3.13
SMARCD1-209ENST00000550477 LRP6O75581 1613 aa34.61■■■■□ 3.13
SMARCD1-209ENST00000550477 SETD5Q9C0A6 1442 aa34.58■■■■□ 3.13
SMARCD1-209ENST00000550477 RXRBP28702 533 aa34.54■■■■□ 3.12
SMARCD1-209ENST00000550477 PTCH1Q13635 1447 aa34.51■■■■□ 3.12
SMARCD1-209ENST00000550477 NHSL1Q5SYE7 1610 aa34.51■■■■□ 3.11
SMARCD1-209ENST00000550477 NALCNQ8IZF0 1738 aa34.47■■■■□ 3.11
SMARCD1-209ENST00000550477 C1orf167Q5SNV9 1468 aa34.46■■■■□ 3.11
SMARCD1-209ENST00000550477 AFF2P51816 1311 aa34.46■■■■□ 3.11
SMARCD1-209ENST00000550477 DDX17Q92841 729 aaKnown RBP34.44■■■■□ 3.1
SMARCD1-209ENST00000550477 ROBO2Q9HCK4 1378 aa34.44■■■■□ 3.1
SMARCD1-209ENST00000550477 SETD1AO15047 1707 aaKnown RBP34.44■■■■□ 3.1
SMARCD1-209ENST00000550477 CCDC144AA2RUR9 1427 aa34.42■■■■□ 3.1
SMARCD1-209ENST00000550477 PNPLA6Q8IY17 1366 aa34.41■■■■□ 3.1
SMARCD1-209ENST00000550477 ACIN1Q9UKV3 1341 aaKnown RBP34.41■■■■□ 3.1
SMARCD1-209ENST00000550477 C8orf37Q96NL8 207 aa34.41■■■■□ 3.1
SMARCD1-209ENST00000550477 PPLO60437 1756 aa34.41■■■■□ 3.1
SMARCD1-209ENST00000550477 PRAG1Q86YV5 1406 aa34.39■■■■□ 3.1
SMARCD1-209ENST00000550477 FOXD1Q16676 465 aa34.39■■■■□ 3.1
SMARCD1-209ENST00000550477 RGL3Q3MIN7 710 aa34.38■■■■□ 3.09
SMARCD1-209ENST00000550477 ORAI2Q96SN7 254 aa34.38■■■■□ 3.09
SMARCD1-209ENST00000550477 MPHOSPH9Q99550 1183 aa34.37■■■■□ 3.09
SMARCD1-209ENST00000550477 CDK12Q9NYV4 1490 aaPredicted RBP34.35■■■■□ 3.09
SMARCD1-209ENST00000550477 NGLY1Q96IV0 654 aa34.35■■■■□ 3.09
SMARCD1-209ENST00000550477 QTRT2Q9H974 415 aaKnown RBP34.35■■■■□ 3.09
SMARCD1-209ENST00000550477 ANKRD30BQ9BXX2 1392 aa34.35■■■■□ 3.09
SMARCD1-209ENST00000550477 SOS2Q07890 1332 aaPredicted RBP34.34■■■■□ 3.09
SMARCD1-209ENST00000550477 UPF1Q92900 1129 aaKnown RBP eCLIP34.34■■■■□ 3.09
SMARCD1-209ENST00000550477 RBM6P78332 1123 aaKnown RBP34.32■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms