RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 NUTM2DQ5VT03 806 aaPredicted RBP30.74■■■□□ 2.51
VPS29-206ENST00000549578 LTKP29376 864 aa30.72■■■□□ 2.51
VPS29-206ENST00000549578 TXNDC2Q86VQ3 553 aa30.72■■■□□ 2.51
VPS29-206ENST00000549578 PPLO60437 1756 aa30.7■■■□□ 2.51
VPS29-206ENST00000549578 RPGRIP1LQ68CZ1 1315 aa30.7■■■□□ 2.51
VPS29-206ENST00000549578 ANKLE2Q86XL3 938 aa30.7■■■□□ 2.51
VPS29-206ENST00000549578 SCAF11Q99590 1463 aaKnown RBP30.7■■■□□ 2.51
VPS29-206ENST00000549578 NCKAP5LQ9HCH0 1330 aa30.7■■■□□ 2.51
VPS29-206ENST00000549578 EID1Q9Y6B2 187 aa30.7■■■□□ 2.51
VPS29-206ENST00000549578 POLR1AO95602 1720 aaPredicted RBP30.69■■■□□ 2.5
VPS29-206ENST00000549578 IFT172Q9UG01 1749 aa30.69■■■□□ 2.5
VPS29-206ENST00000549578 STRCQ7RTU9 1775 aa30.67■■■□□ 2.5
VPS29-206ENST00000549578 PPP1R15AO75807 674 aaPredicted RBP30.67■■■□□ 2.5
VPS29-206ENST00000549578 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.67■■■□□ 2.5
VPS29-206ENST00000549578 HDGFP51858 240 aaKnown RBP30.66■■■□□ 2.5
VPS29-206ENST00000549578 SENP3Q9H4L4 574 aaPredicted RBP30.65■■■□□ 2.5
VPS29-206ENST00000549578 TONSLQ96HA7 1378 aa30.65■■■□□ 2.5
VPS29-206ENST00000549578 DCAF11Q8TEB1 546 aa30.64■■■□□ 2.5
VPS29-206ENST00000549578 L3MBTL2Q969R5 705 aa30.64■■■□□ 2.5
VPS29-206ENST00000549578 KDM2AQ9Y2K7 1162 aa30.62■■■□□ 2.49
VPS29-206ENST00000549578 VGFO15240 615 aaPredicted RBP30.61■■■□□ 2.49
VPS29-206ENST00000549578 ADGRF5Q8IZF2 1346 aa30.6■■■□□ 2.49
VPS29-206ENST00000549578 MED14O60244 1454 aa30.58■■■□□ 2.49
VPS29-206ENST00000549578 MYOM2P54296 1465 aa30.58■■■□□ 2.49
VPS29-206ENST00000549578 NPHP4O75161 1426 aaPredicted RBP30.58■■■□□ 2.49
VPS29-206ENST00000549578 PLEKHG1Q9ULL1 1385 aa30.58■■■□□ 2.49
VPS29-206ENST00000549578 IQGAP1P46940 1657 aa30.55■■■□□ 2.48
VPS29-206ENST00000549578 BCANQ96GW7 911 aa30.55■■■□□ 2.48
VPS29-206ENST00000549578 NRXN1Q9ULB1 1477 aa30.53■■■□□ 2.48
VPS29-206ENST00000549578 NRXN3Q9Y4C0 1643 aa30.52■■■□□ 2.48
VPS29-206ENST00000549578 PIK3C2GO75747 1445 aa30.51■■■□□ 2.47
VPS29-206ENST00000549578 SETBP1Q9Y6X0 1596 aa30.5■■■□□ 2.47
VPS29-206ENST00000549578 STAC3Q96MF2 364 aa30.5■■■□□ 2.47
VPS29-206ENST00000549578 SLC26A8Q96RN1 970 aa30.49■■■□□ 2.47
VPS29-206ENST00000549578 ADAMTS13Q76LX8 1427 aa30.48■■■□□ 2.47
VPS29-206ENST00000549578 TIMELESSQ9UNS1 1208 aa30.47■■■□□ 2.47
VPS29-206ENST00000549578 PRAG1Q86YV5 1406 aa30.46■■■□□ 2.47
VPS29-206ENST00000549578 DMRT2Q9Y5R5 561 aa30.45■■■□□ 2.47
VPS29-206ENST00000549578 ALKQ9UM73 1620 aa30.43■■■□□ 2.46
VPS29-206ENST00000549578 DIP2AQ14689 1571 aa30.41■■■□□ 2.46
VPS29-206ENST00000549578 CFAP70Q5T0N1 1121 aa30.41■■■□□ 2.46
VPS29-206ENST00000549578 SETD1AO15047 1707 aaKnown RBP30.4■■■□□ 2.46
VPS29-206ENST00000549578 TBX22Q9Y458 520 aa30.4■■■□□ 2.46
VPS29-206ENST00000549578 NBPF8Q3BBV2 869 aa30.39■■■□□ 2.46
VPS29-206ENST00000549578 C14orf93Q9H972 538 aaKnown RBP30.38■■■□□ 2.45
VPS29-206ENST00000549578 LAMC1P11047 1609 aa30.37■■■□□ 2.45
VPS29-206ENST00000549578 METP08581 1390 aa30.36■■■□□ 2.45
VPS29-206ENST00000549578 ASXL1Q8IXJ9 1541 aa30.33■■■□□ 2.45
VPS29-206ENST00000549578 TRPM1Q7Z4N2 1603 aa30.32■■■□□ 2.44
VPS29-206ENST00000549578 KIAA1210Q9ULL0 1709 aa30.32■■■□□ 2.44
VPS29-206ENST00000549578 TMEM132EQ6IEE7 984 aa30.32■■■□□ 2.44
VPS29-206ENST00000549578 NBPF1Q3BBV0 1214 aa30.28■■■□□ 2.44
VPS29-206ENST00000549578 ZNF335Q9H4Z2 1342 aaPredicted RBP30.28■■■□□ 2.44
VPS29-206ENST00000549578 PTPRUQ92729 1446 aa30.28■■■□□ 2.44
VPS29-206ENST00000549578 ADGRB1O14514 1584 aa30.28■■■□□ 2.44
VPS29-206ENST00000549578 PIK3R4Q99570 1358 aa30.27■■■□□ 2.44
VPS29-206ENST00000549578 CHD2O14647 1828 aaKnown RBP30.26■■■□□ 2.44
VPS29-206ENST00000549578 RALGAPBQ86X10 1494 aa30.25■■■□□ 2.43
VPS29-206ENST00000549578 STRCP1A6NGW2 1772 aa30.24■■■□□ 2.43
VPS29-206ENST00000549578 ROCK2O75116 1388 aaKnown RBP30.23■■■□□ 2.43
VPS29-206ENST00000549578 NWD1Q149M9 1564 aa30.23■■■□□ 2.43
VPS29-206ENST00000549578 KCNA6P17658 529 aa30.22■■■□□ 2.43
VPS29-206ENST00000549578 AMOTL2Q9Y2J4 779 aa30.22■■■□□ 2.43
VPS29-206ENST00000549578 STK26Q9P289 416 aa30.22■■■□□ 2.43
VPS29-206ENST00000549578 YTHDC2Q9H6S0 1430 aaKnown RBP30.21■■■□□ 2.43
VPS29-206ENST00000549578 XRN1Q8IZH2 1706 aaKnown RBP30.21■■■□□ 2.43
VPS29-206ENST00000549578 LRPPRCP42704 1394 aaKnown RBP30.2■■■□□ 2.42
VPS29-206ENST00000549578 GPRASP1Q5JY77 1395 aa30.16■■■□□ 2.42
VPS29-206ENST00000549578 ABCC11Q96J66 1382 aa30.14■■■□□ 2.42
VPS29-206ENST00000549578 TRAK1Q9UPV9 953 aa30.14■■■□□ 2.42
VPS29-206ENST00000549578 KNDC1Q76NI1 1749 aa30.14■■■□□ 2.42
VPS29-206ENST00000549578 NKTRP30414 1462 aaKnown RBP30.14■■■□□ 2.41
VPS29-206ENST00000549578 TECPR2O15040 1411 aa30.13■■■□□ 2.41
VPS29-206ENST00000549578 CARD11Q9BXL7 1154 aa30.13■■■□□ 2.41
VPS29-206ENST00000549578 LTBP4Q8N2S1 1624 aa30.13■■■□□ 2.41
VPS29-206ENST00000549578 ROBO2Q9HCK4 1378 aa30.12■■■□□ 2.41
VPS29-206ENST00000549578 CPS1P31327 1500 aa30.11■■■□□ 2.41
VPS29-206ENST00000549578 PTCH1Q13635 1447 aa30.1■■■□□ 2.41
VPS29-206ENST00000549578 ZEB1P37275 1124 aaPredicted RBP30.1■■■□□ 2.41
VPS29-206ENST00000549578 RBM33Q96EV2 1170 aaKnown RBP30.09■■■□□ 2.41
VPS29-206ENST00000549578 DLC1Q96QB1 1528 aa30.08■■■□□ 2.41
VPS29-206ENST00000549578 PROSER2Q86WR7 435 aaPredicted RBP30.07■■■□□ 2.4
VPS29-206ENST00000549578 ARHGEF28Q8N1W1 1705 aaKnown RBP30.07■■■□□ 2.4
VPS29-206ENST00000549578 LRRC7Q96NW7 1537 aa30.06■■■□□ 2.4
VPS29-206ENST00000549578 WAPLQ7Z5K2 1190 aa30.06■■■□□ 2.4
VPS29-206ENST00000549578 PLEKHH1Q9ULM0 1364 aa30.05■■■□□ 2.4
VPS29-206ENST00000549578 PRAM1Q96QH2 718 aa30.04■■■□□ 2.4
VPS29-206ENST00000549578 FAM135BQ49AJ0 1406 aa30.03■■■□□ 2.4
VPS29-206ENST00000549578 TMEM94Q12767 1356 aa30.03■■■□□ 2.4
VPS29-206ENST00000549578 SIRT1Q96EB6 747 aa30.01■■■□□ 2.4
VPS29-206ENST00000549578 SAFB2Q14151 953 aaKnown RBP eCLIP30.01■■■□□ 2.39
VPS29-206ENST00000549578 POGKQ9P215 609 aa30.01■■■□□ 2.39
VPS29-206ENST00000549578 XIRP1Q702N8 1843 aaKnown RBP30■■■□□ 2.39
VPS29-206ENST00000549578 USP47Q96K76 1375 aa29.98■■■□□ 2.39
VPS29-206ENST00000549578 EIF3AQ14152 1382 aaKnown RBP29.97■■■□□ 2.39
VPS29-206ENST00000549578 CENPJQ9HC77 1338 aaPredicted RBP29.95■■■□□ 2.39
VPS29-206ENST00000549578 C14orf37Q86TY3 774 aa29.95■■■□□ 2.38
VPS29-206ENST00000549578 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.95■■■□□ 2.38
VPS29-206ENST00000549578 NALCNQ8IZF0 1738 aa29.94■■■□□ 2.38
VPS29-206ENST00000549578 QRICH2Q9H0J4 1663 aa29.92■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms