RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 RRBP1Q9P2E9 1410 aaKnown RBP20.33■□□□□ 0.84
CPSF6-204ENST00000547486 RIMS2Q9UQ26 1411 aa20.33■□□□□ 0.84
CPSF6-204ENST00000547486 E9PCH4 1651 aa20.32■□□□□ 0.84
CPSF6-204ENST00000547486 NUTM2DQ5VT03 806 aaPredicted RBP20.32■□□□□ 0.84
CPSF6-204ENST00000547486 TMEM94Q12767 1356 aa20.32■□□□□ 0.84
CPSF6-204ENST00000547486 GCC2Q8IWJ2 1684 aa20.32■□□□□ 0.84
CPSF6-204ENST00000547486 TMEM131LA2VDJ0 1609 aa20.31■□□□□ 0.84
CPSF6-204ENST00000547486 IQGAP3Q86VI3 1631 aa20.31■□□□□ 0.84
CPSF6-204ENST00000547486 HDGFP51858 240 aaKnown RBP20.31■□□□□ 0.84
CPSF6-204ENST00000547486 PROSER2Q86WR7 435 aaPredicted RBP20.31■□□□□ 0.84
CPSF6-204ENST00000547486 PLEKHG1Q9ULL1 1385 aa20.31■□□□□ 0.84
CPSF6-204ENST00000547486 PPP1R15AO75807 674 aaPredicted RBP20.3■□□□□ 0.84
CPSF6-204ENST00000547486 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.27■□□□□ 0.84
CPSF6-204ENST00000547486 TBX22Q9Y458 520 aa20.27■□□□□ 0.84
CPSF6-204ENST00000547486 XIRP1Q702N8 1843 aaKnown RBP20.27■□□□□ 0.84
CPSF6-204ENST00000547486 MYO5BQ9ULV0 1848 aa20.26■□□□□ 0.83
CPSF6-204ENST00000547486 NAIPQ13075 1403 aa20.25■□□□□ 0.83
CPSF6-204ENST00000547486 SOCS7O14512 581 aa20.24■□□□□ 0.83
CPSF6-204ENST00000547486 ADAMTS13Q76LX8 1427 aa20.22■□□□□ 0.83
CPSF6-204ENST00000547486 FAM135BQ49AJ0 1406 aa20.21■□□□□ 0.83
CPSF6-204ENST00000547486 NWD1Q149M9 1564 aa20.21■□□□□ 0.83
CPSF6-204ENST00000547486 NKTRP30414 1462 aaKnown RBP20.2■□□□□ 0.82
CPSF6-204ENST00000547486 MED1Q15648 1581 aaPredicted RBP20.2■□□□□ 0.82
CPSF6-204ENST00000547486 TRIM52Q96A61 297 aa20.17■□□□□ 0.82
CPSF6-204ENST00000547486 ZNF326Q5BKZ1 582 aaKnown RBP20.16■□□□□ 0.82
CPSF6-204ENST00000547486 SLAIN2Q9P270 581 aa20.16■□□□□ 0.82
CPSF6-204ENST00000547486 HFM1A2PYH4 1435 aa20.16■□□□□ 0.82
CPSF6-204ENST00000547486 MSH6P52701 1360 aa20.15■□□□□ 0.82
CPSF6-204ENST00000547486 CHD2O14647 1828 aaKnown RBP20.15■□□□□ 0.82
CPSF6-204ENST00000547486 AMOTL2Q9Y2J4 779 aa20.14■□□□□ 0.81
CPSF6-204ENST00000547486 PTPRUQ92729 1446 aa20.13■□□□□ 0.81
CPSF6-204ENST00000547486 PIK3R4Q99570 1358 aa20.13■□□□□ 0.81
CPSF6-204ENST00000547486 SPHKAPQ2M3C7 1700 aa20.11■□□□□ 0.81
CPSF6-204ENST00000547486 NCOA3Q9Y6Q9 1424 aa20.1■□□□□ 0.81
CPSF6-204ENST00000547486 PHF23Q9BUL5 403 aaPredicted RBP20.1■□□□□ 0.81
CPSF6-204ENST00000547486 SLC4A1APQ9BWU0 796 aaKnown RBP20.1■□□□□ 0.81
CPSF6-204ENST00000547486 CLTCL1P53675 1640 aa20.09■□□□□ 0.81
CPSF6-204ENST00000547486 DIP2AQ14689 1571 aa20.09■□□□□ 0.81
CPSF6-204ENST00000547486 C14orf37Q86TY3 774 aa20.09■□□□□ 0.81
CPSF6-204ENST00000547486 METP08581 1390 aa20.08■□□□□ 0.81
CPSF6-204ENST00000547486 TRPM2O94759 1503 aa20.08■□□□□ 0.81
CPSF6-204ENST00000547486 ROBO1Q9Y6N7 1651 aa20.08■□□□□ 0.81
CPSF6-204ENST00000547486 C19orf44Q9H6X5 657 aa20.08■□□□□ 0.81
CPSF6-204ENST00000547486 FOXD1Q16676 465 aa20.07■□□□□ 0.8
CPSF6-204ENST00000547486 RGS17Q9UGC6 210 aaPredicted RBP20.07■□□□□ 0.8
CPSF6-204ENST00000547486 NRXN3Q9Y4C0 1643 aa20.05■□□□□ 0.8
CPSF6-204ENST00000547486 SETBP1Q9Y6X0 1596 aa20.05■□□□□ 0.8
CPSF6-204ENST00000547486 NEXMIFQ5QGS0 1516 aa20.04■□□□□ 0.8
CPSF6-204ENST00000547486 ATF3P18847 181 aa20.04■□□□□ 0.8
CPSF6-204ENST00000547486 CADPS2Q86UW7 1296 aa20.04■□□□□ 0.8
CPSF6-204ENST00000547486 VGFO15240 615 aaPredicted RBP20■□□□□ 0.79
CPSF6-204ENST00000547486 MPHOSPH9Q99550 1183 aa20■□□□□ 0.79
CPSF6-204ENST00000547486 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.99■□□□□ 0.79
CPSF6-204ENST00000547486 RPGRIP1LQ68CZ1 1315 aa19.98■□□□□ 0.79
CPSF6-204ENST00000547486 BRINP3Q76B58 766 aa19.97■□□□□ 0.79
CPSF6-204ENST00000547486 XRN1Q8IZH2 1706 aaKnown RBP19.96■□□□□ 0.79
CPSF6-204ENST00000547486 JCADQ9P266 1359 aa19.95■□□□□ 0.79
CPSF6-204ENST00000547486 KIF1BO60333 1816 aa19.95■□□□□ 0.78
CPSF6-204ENST00000547486 PHLPP1O60346 1717 aa19.94■□□□□ 0.78
CPSF6-204ENST00000547486 POTEAQ6S8J7 498 aa19.94■□□□□ 0.78
CPSF6-204ENST00000547486 RGL3Q3MIN7 710 aa19.92■□□□□ 0.78
CPSF6-204ENST00000547486 DCCP43146 1447 aa19.92■□□□□ 0.78
CPSF6-204ENST00000547486 COL16A1Q07092 1604 aaPredicted RBP19.91■□□□□ 0.78
CPSF6-204ENST00000547486 ADGRF5Q8IZF2 1346 aa19.91■□□□□ 0.78
CPSF6-204ENST00000547486 ROBO2Q9HCK4 1378 aa19.91■□□□□ 0.78
CPSF6-204ENST00000547486 MST1RQ04912 1400 aa19.91■□□□□ 0.78
CPSF6-204ENST00000547486 CCDC144AA2RUR9 1427 aa19.89■□□□□ 0.77
CPSF6-204ENST00000547486 ADGRL3Q9HAR2 1447 aa19.89■□□□□ 0.77
CPSF6-204ENST00000547486 SPATA31E1Q6ZUB1 1445 aa19.88■□□□□ 0.77
CPSF6-204ENST00000547486 DDX17Q92841 729 aaKnown RBP19.88■□□□□ 0.77
CPSF6-204ENST00000547486 AHDC1Q5TGY3 1603 aaPredicted RBP19.87■□□□□ 0.77
CPSF6-204ENST00000547486 SETD5Q9C0A6 1442 aa19.87■□□□□ 0.77
CPSF6-204ENST00000547486 SETD1AO15047 1707 aaKnown RBP19.85■□□□□ 0.77
CPSF6-204ENST00000547486 SPATA31A6Q5VVP1 1343 aa19.85■□□□□ 0.77
CPSF6-204ENST00000547486 ASXL1Q8IXJ9 1541 aa19.85■□□□□ 0.77
CPSF6-204ENST00000547486 PTCH1Q13635 1447 aa19.85■□□□□ 0.77
CPSF6-204ENST00000547486 LRP6O75581 1613 aa19.84■□□□□ 0.77
CPSF6-204ENST00000547486 PPLO60437 1756 aa19.84■□□□□ 0.77
CPSF6-204ENST00000547486 ORAI2Q96SN7 254 aa19.82■□□□□ 0.76
CPSF6-204ENST00000547486 PRAG1Q86YV5 1406 aa19.82■□□□□ 0.76
CPSF6-204ENST00000547486 ANKRD30BQ9BXX2 1392 aa19.82■□□□□ 0.76
CPSF6-204ENST00000547486 C1orf167Q5SNV9 1468 aa19.81■□□□□ 0.76
CPSF6-204ENST00000547486 TMEM132EQ6IEE7 984 aa19.81■□□□□ 0.76
CPSF6-204ENST00000547486 STK26Q9P289 416 aa19.81■□□□□ 0.76
CPSF6-204ENST00000547486 NALCNQ8IZF0 1738 aa19.81■□□□□ 0.76
CPSF6-204ENST00000547486 RAB3GAP2Q9H2M9 1393 aa19.81■□□□□ 0.76
CPSF6-204ENST00000547486 ACIN1Q9UKV3 1341 aaKnown RBP19.8■□□□□ 0.76
CPSF6-204ENST00000547486 NUTM2BA6NNL0 878 aaPredicted RBP19.8■□□□□ 0.76
CPSF6-204ENST00000547486 NUTM2EB1AL46 878 aaPredicted RBP19.8■□□□□ 0.76
CPSF6-204ENST00000547486 MEX3CQ5U5Q3 659 aaKnown RBP19.8■□□□□ 0.76
CPSF6-204ENST00000547486 NUTM2AQ8IVF1 878 aaPredicted RBP19.8■□□□□ 0.76
CPSF6-204ENST00000547486 LRRC59Q96AG4 307 aaKnown RBP19.8■□□□□ 0.76
CPSF6-204ENST00000547486 WAPLQ7Z5K2 1190 aa19.79■□□□□ 0.76
CPSF6-204ENST00000547486 PIK3C2GO75747 1445 aa19.76■□□□□ 0.75
CPSF6-204ENST00000547486 SHPRHQ149N8 1683 aa19.75■□□□□ 0.75
CPSF6-204ENST00000547486 LRPPRCP42704 1394 aaKnown RBP19.75■□□□□ 0.75
CPSF6-204ENST00000547486 ABCC11Q96J66 1382 aa19.74■□□□□ 0.75
CPSF6-204ENST00000547486 NHSL1Q5SYE7 1610 aa19.74■□□□□ 0.75
CPSF6-204ENST00000547486 C14orf93Q9H972 538 aaKnown RBP19.74■□□□□ 0.75
CPSF6-204ENST00000547486 PNPLA6Q8IY17 1366 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms