RNA–Protein interactions for RNA: ENST00000546538.1

CHERP-204, Transcript of calcium homeostasis endoplasmic reticulum protein, humanhuman

TSL 1 (best)

Gene CHERP, Length 1,429 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHERP-204ENST00000546538 SOCS7O14512 581 aa28.75■■■□□ 2.19
CHERP-204ENST00000546538 NWD1Q149M9 1564 aa28.7■■■□□ 2.19
CHERP-204ENST00000546538 ITGAEP38570 1179 aa28.7■■■□□ 2.19
CHERP-204ENST00000546538 TMEM94Q12767 1356 aa28.7■■■□□ 2.18
CHERP-204ENST00000546538 KCNA6P17658 529 aa28.69■■■□□ 2.18
CHERP-204ENST00000546538 SENP3Q9H4L4 574 aaPredicted RBP28.69■■■□□ 2.18
CHERP-204ENST00000546538 RIMS2Q9UQ26 1411 aa28.68■■■□□ 2.18
CHERP-204ENST00000546538 RBM33Q96EV2 1170 aaKnown RBP28.67■■■□□ 2.18
CHERP-204ENST00000546538 PLEKHG1Q9ULL1 1385 aa28.66■■■□□ 2.18
CHERP-204ENST00000546538 NUP155O75694 1391 aa28.65■■■□□ 2.18
CHERP-204ENST00000546538 NKTRP30414 1462 aaKnown RBP28.62■■■□□ 2.17
CHERP-204ENST00000546538 CHD2O14647 1828 aaKnown RBP28.6■■■□□ 2.17
CHERP-204ENST00000546538 RRBP1Q9P2E9 1410 aaKnown RBP28.59■■■□□ 2.17
CHERP-204ENST00000546538 PROSER2Q86WR7 435 aaPredicted RBP28.59■■■□□ 2.17
CHERP-204ENST00000546538 ADAMTS13Q76LX8 1427 aa28.58■■■□□ 2.17
CHERP-204ENST00000546538 FAM135BQ49AJ0 1406 aa28.57■■■□□ 2.16
CHERP-204ENST00000546538 NUTM2DQ5VT03 806 aaPredicted RBP28.57■■■□□ 2.16
CHERP-204ENST00000546538 CHGAP10645 457 aaKnown RBP28.56■■■□□ 2.16
CHERP-204ENST00000546538 BCANQ96GW7 911 aa28.56■■■□□ 2.16
CHERP-204ENST00000546538 PPP1R15AO75807 674 aaPredicted RBP28.53■■■□□ 2.16
CHERP-204ENST00000546538 ROBO1Q9Y6N7 1651 aa28.53■■■□□ 2.16
CHERP-204ENST00000546538 TBX22Q9Y458 520 aa28.52■■■□□ 2.16
CHERP-204ENST00000546538 SPHKAPQ2M3C7 1700 aa28.51■■■□□ 2.15
CHERP-204ENST00000546538 NAIPQ13075 1403 aa28.49■■■□□ 2.15
CHERP-204ENST00000546538 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.49■■■□□ 2.15
CHERP-204ENST00000546538 HDGFP51858 240 aaKnown RBP28.48■■■□□ 2.15
CHERP-204ENST00000546538 DIP2AQ14689 1571 aa28.47■■■□□ 2.15
CHERP-204ENST00000546538 NRXN3Q9Y4C0 1643 aa28.46■■■□□ 2.15
CHERP-204ENST00000546538 PTPRUQ92729 1446 aa28.44■■■□□ 2.14
CHERP-204ENST00000546538 MSH6P52701 1360 aa28.44■■■□□ 2.14
CHERP-204ENST00000546538 CLTCL1P53675 1640 aa28.43■■■□□ 2.14
CHERP-204ENST00000546538 RGS17Q9UGC6 210 aaPredicted RBP28.42■■■□□ 2.14
CHERP-204ENST00000546538 PIK3R4Q99570 1358 aa28.4■■■□□ 2.14
CHERP-204ENST00000546538 PHF23Q9BUL5 403 aaPredicted RBP28.4■■■□□ 2.14
CHERP-204ENST00000546538 SLAIN2Q9P270 581 aa28.39■■■□□ 2.14
CHERP-204ENST00000546538 SETBP1Q9Y6X0 1596 aa28.39■■■□□ 2.13
CHERP-204ENST00000546538 TRPM2O94759 1503 aa28.38■■■□□ 2.13
CHERP-204ENST00000546538 NCOA3Q9Y6Q9 1424 aa28.37■■■□□ 2.13
CHERP-204ENST00000546538 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.36■■■□□ 2.13
CHERP-204ENST00000546538 HFM1A2PYH4 1435 aa28.35■■■□□ 2.13
CHERP-204ENST00000546538 XRN1Q8IZH2 1706 aaKnown RBP28.34■■■□□ 2.13
CHERP-204ENST00000546538 NEXMIFQ5QGS0 1516 aa28.34■■■□□ 2.13
CHERP-204ENST00000546538 AMOTL2Q9Y2J4 779 aa28.33■■■□□ 2.13
CHERP-204ENST00000546538 PHLPP1O60346 1717 aa28.32■■■□□ 2.12
CHERP-204ENST00000546538 METP08581 1390 aa28.31■■■□□ 2.12
CHERP-204ENST00000546538 COL16A1Q07092 1604 aaPredicted RBP28.31■■■□□ 2.12
CHERP-204ENST00000546538 ZNF326Q5BKZ1 582 aaKnown RBP28.28■■■□□ 2.12
CHERP-204ENST00000546538 C19orf44Q9H6X5 657 aa28.27■■■□□ 2.12
CHERP-204ENST00000546538 C14orf37Q86TY3 774 aa28.26■■■□□ 2.11
CHERP-204ENST00000546538 KIF1BO60333 1816 aa28.25■■■□□ 2.11
CHERP-204ENST00000546538 AHDC1Q5TGY3 1603 aaPredicted RBP28.22■■■□□ 2.11
CHERP-204ENST00000546538 CADPS2Q86UW7 1296 aa28.22■■■□□ 2.11
CHERP-204ENST00000546538 TRIM52Q96A61 297 aa28.21■■■□□ 2.11
CHERP-204ENST00000546538 JCADQ9P266 1359 aa28.21■■■□□ 2.11
CHERP-204ENST00000546538 SETD1AO15047 1707 aaKnown RBP28.21■■■□□ 2.11
CHERP-204ENST00000546538 POTEAQ6S8J7 498 aa28.2■■■□□ 2.11
CHERP-204ENST00000546538 ATF3P18847 181 aa28.19■■■□□ 2.1
CHERP-204ENST00000546538 DCCP43146 1447 aa28.18■■■□□ 2.1
CHERP-204ENST00000546538 BRINP3Q76B58 766 aa28.17■■■□□ 2.1
CHERP-204ENST00000546538 SLC4A1APQ9BWU0 796 aaKnown RBP28.17■■■□□ 2.1
CHERP-204ENST00000546538 LRP6O75581 1613 aa28.17■■■□□ 2.1
CHERP-204ENST00000546538 MST1RQ04912 1400 aa28.16■■■□□ 2.1
CHERP-204ENST00000546538 NALCNQ8IZF0 1738 aa28.15■■■□□ 2.1
CHERP-204ENST00000546538 FOXD1Q16676 465 aa28.15■■■□□ 2.1
CHERP-204ENST00000546538 ASXL1Q8IXJ9 1541 aa28.13■■■□□ 2.09
CHERP-204ENST00000546538 ADGRL3Q9HAR2 1447 aa28.12■■■□□ 2.09
CHERP-204ENST00000546538 PPLO60437 1756 aa28.12■■■□□ 2.09
CHERP-204ENST00000546538 SHPRHQ149N8 1683 aa28.11■■■□□ 2.09
CHERP-204ENST00000546538 ROBO2Q9HCK4 1378 aa28.08■■■□□ 2.09
CHERP-204ENST00000546538 NHSL1Q5SYE7 1610 aa28.07■■■□□ 2.08
CHERP-204ENST00000546538 PTCH1Q13635 1447 aa28.06■■■□□ 2.08
CHERP-204ENST00000546538 PRAG1Q86YV5 1406 aa28.05■■■□□ 2.08
CHERP-204ENST00000546538 RPGRIP1LQ68CZ1 1315 aa28.05■■■□□ 2.08
CHERP-204ENST00000546538 VGFO15240 615 aaPredicted RBP28.05■■■□□ 2.08
CHERP-204ENST00000546538 SPATA31A6Q5VVP1 1343 aa28.04■■■□□ 2.08
CHERP-204ENST00000546538 SPATA31E1Q6ZUB1 1445 aa28.03■■■□□ 2.08
CHERP-204ENST00000546538 DDX17Q92841 729 aaKnown RBP28.02■■■□□ 2.08
CHERP-204ENST00000546538 SETD5Q9C0A6 1442 aa28.01■■■□□ 2.07
CHERP-204ENST00000546538 MPHOSPH9Q99550 1183 aa28■■■□□ 2.07
CHERP-204ENST00000546538 ADGRF5Q8IZF2 1346 aa27.98■■■□□ 2.07
CHERP-204ENST00000546538 IFT172Q9UG01 1749 aa27.98■■■□□ 2.07
CHERP-204ENST00000546538 C1orf167Q5SNV9 1468 aa27.97■■■□□ 2.07
CHERP-204ENST00000546538 CCDC144AA2RUR9 1427 aa27.96■■■□□ 2.07
CHERP-204ENST00000546538 LAMC1P11047 1609 aa27.94■■■□□ 2.06
CHERP-204ENST00000546538 RGL3Q3MIN7 710 aa27.92■■■□□ 2.06
CHERP-204ENST00000546538 PNPLA6Q8IY17 1366 aa27.9■■■□□ 2.06
CHERP-204ENST00000546538 NUTM2BA6NNL0 878 aaPredicted RBP27.9■■■□□ 2.06
CHERP-204ENST00000546538 NUTM2EB1AL46 878 aaPredicted RBP27.9■■■□□ 2.06
CHERP-204ENST00000546538 MEX3CQ5U5Q3 659 aaKnown RBP27.9■■■□□ 2.06
CHERP-204ENST00000546538 NUTM2AQ8IVF1 878 aaPredicted RBP27.9■■■□□ 2.06
CHERP-204ENST00000546538 ORAI2Q96SN7 254 aa27.9■■■□□ 2.06
CHERP-204ENST00000546538 LRRC59Q96AG4 307 aaKnown RBP27.87■■■□□ 2.05
CHERP-204ENST00000546538 PIK3C2GO75747 1445 aa27.87■■■□□ 2.05
CHERP-204ENST00000546538 TECPR2O15040 1411 aa27.86■■■□□ 2.05
CHERP-204ENST00000546538 ANKRD30BQ9BXX2 1392 aa27.85■■■□□ 2.05
CHERP-204ENST00000546538 ZNF772Q68DY9 489 aaPredicted RBP27.84■■■□□ 2.05
CHERP-204ENST00000546538 CDC42BPGQ6DT37 1551 aa27.84■■■□□ 2.05
CHERP-204ENST00000546538 SOS2Q07890 1332 aaPredicted RBP27.84■■■□□ 2.05
CHERP-204ENST00000546538 LRPPRCP42704 1394 aaKnown RBP27.82■■■□□ 2.04
CHERP-204ENST00000546538 PLEKHH1Q9ULM0 1364 aa27.82■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms