RNA–Protein interactions for RNA: ENST00000546345.5

CCDC60-205, Transcript of coiled-coil domain containing 60, humanhuman

TSL 1 (best)

Gene CCDC60, Length 865 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-205ENST00000546345 NCOA1Q15788 1441 aa11.56□□□□□ -0.56
CCDC60-205ENST00000546345 LHX8Q68G74 356 aa11.56□□□□□ -0.56
CCDC60-205ENST00000546345 PDE4AP27815 886 aa11.55□□□□□ -0.56
CCDC60-205ENST00000546345 VSIG10Q8N0Z9 540 aa11.55□□□□□ -0.56
CCDC60-205ENST00000546345 SCUBE2Q9NQ36 999 aa11.55□□□□□ -0.56
CCDC60-205ENST00000546345 ATP10AO60312 1499 aa11.54□□□□□ -0.56
CCDC60-205ENST00000546345 MROH2AA6NES4 1674 aa11.53□□□□□ -0.56
CCDC60-205ENST00000546345 CEBPAP49715 358 aaPredicted RBP11.53□□□□□ -0.56
CCDC60-205ENST00000546345 MLECQ14165 292 aa11.53□□□□□ -0.56
CCDC60-205ENST00000546345 CAMSAP1Q5T5Y3 1602 aa11.53□□□□□ -0.56
CCDC60-205ENST00000546345 MYO3AQ8NEV4 1616 aa11.53□□□□□ -0.56
CCDC60-205ENST00000546345 TMC2Q8TDI7 906 aa11.52□□□□□ -0.57
CCDC60-205ENST00000546345 KIF14Q15058 1648 aa11.5□□□□□ -0.57
CCDC60-205ENST00000546345 LARP6Q9BRS8 491 aaKnown RBP11.5□□□□□ -0.57
CCDC60-205ENST00000546345 CRISPLD2Q9H0B8 497 aa11.5□□□□□ -0.57
CCDC60-205ENST00000546345 GPHNQ9NQX3 736 aaPredicted RBP11.5□□□□□ -0.57
CCDC60-205ENST00000546345 NCKAP5LQ9HCH0 1330 aa11.5□□□□□ -0.57
CCDC60-205ENST00000546345 CDK13Q14004 1512 aaKnown RBP11.5□□□□□ -0.57
CCDC60-205ENST00000546345 WDR70Q9NW82 654 aa11.49□□□□□ -0.57
CCDC60-205ENST00000546345 SCAPERQ9BY12 1400 aa11.49□□□□□ -0.57
CCDC60-205ENST00000546345 ALKQ9UM73 1620 aa11.49□□□□□ -0.57
CCDC60-205ENST00000546345 C2orf72A6NCS6 295 aa11.48□□□□□ -0.57
CCDC60-205ENST00000546345 TMEM92Q6UXU6 159 aa11.48□□□□□ -0.57
CCDC60-205ENST00000546345 P3H3Q8IVL6 736 aa11.48□□□□□ -0.57
CCDC60-205ENST00000546345 KDM2AQ9Y2K7 1162 aa11.48□□□□□ -0.57
CCDC60-205ENST00000546345 ITSN2Q9NZM3 1697 aa11.48□□□□□ -0.57
CCDC60-205ENST00000546345 POLR1AO95602 1720 aaPredicted RBP11.48□□□□□ -0.57
CCDC60-205ENST00000546345 LRRIQ1Q96JM4 1722 aa11.48□□□□□ -0.57
CCDC60-205ENST00000546345 CDC42BPBQ9Y5S2 1711 aa11.48□□□□□ -0.57
CCDC60-205ENST00000546345 AGLP35573 1532 aa11.47□□□□□ -0.57
CCDC60-205ENST00000546345 KIDINS220Q9ULH0 1771 aa11.46□□□□□ -0.57
CCDC60-205ENST00000546345 KIF3CO14782 793 aa11.46□□□□□ -0.57
CCDC60-205ENST00000546345 SLAIN1Q8ND83 568 aa11.46□□□□□ -0.57
CCDC60-205ENST00000546345 DDX27Q96GQ7 796 aaKnown RBP11.45□□□□□ -0.58
CCDC60-205ENST00000546345 ZNF518AQ6AHZ1 1483 aa11.44□□□□□ -0.58
CCDC60-205ENST00000546345 PLCH2O75038 1416 aa11.44□□□□□ -0.58
CCDC60-205ENST00000546345 OTUD5Q96G74 571 aa11.44□□□□□ -0.58
CCDC60-205ENST00000546345 CLTCQ00610 1675 aaKnown RBP11.43□□□□□ -0.58
CCDC60-205ENST00000546345 ZNF335Q9H4Z2 1342 aaPredicted RBP11.43□□□□□ -0.58
CCDC60-205ENST00000546345 CEP170BQ9Y4F5 1589 aaPredicted RBP11.43□□□□□ -0.58
CCDC60-205ENST00000546345 FOXK1P85037 733 aa11.43□□□□□ -0.58
CCDC60-205ENST00000546345 MFSD10Q14728 455 aa11.43□□□□□ -0.58
CCDC60-205ENST00000546345 TCOF1Q13428 1488 aaKnown RBP11.43□□□□□ -0.58
CCDC60-205ENST00000546345 TRAPPC8Q9Y2L5 1435 aa11.43□□□□□ -0.58
CCDC60-205ENST00000546345 NEURL4Q96JN8 1562 aa11.42□□□□□ -0.58
CCDC60-205ENST00000546345 PREX2Q70Z35 1606 aa11.42□□□□□ -0.58
CCDC60-205ENST00000546345 ABCC1P33527 1531 aa11.41□□□□□ -0.58
CCDC60-205ENST00000546345 PLA2R1Q13018 1463 aa11.41□□□□□ -0.58
CCDC60-205ENST00000546345 DSG2Q14126 1118 aa11.41□□□□□ -0.58
CCDC60-205ENST00000546345 PPP1R15BQ5SWA1 713 aa11.41□□□□□ -0.58
CCDC60-205ENST00000546345 UBAP1LF5GYI3 381 aa11.39□□□□□ -0.59
CCDC60-205ENST00000546345 SETD1AO15047 1707 aaKnown RBP11.39□□□□□ -0.59
CCDC60-205ENST00000546345 NPATQ14207 1427 aa11.39□□□□□ -0.59
CCDC60-205ENST00000546345 PLPP6Q8IY26 295 aa11.39□□□□□ -0.59
CCDC60-205ENST00000546345 STRCP1A6NGW2 1772 aa11.39□□□□□ -0.59
CCDC60-205ENST00000546345 MLH3Q9UHC1 1453 aa11.38□□□□□ -0.59
CCDC60-205ENST00000546345 CDC42BPAQ5VT25 1732 aa11.38□□□□□ -0.59
CCDC60-205ENST00000546345 ARHGAP5Q13017 1502 aa11.37□□□□□ -0.59
CCDC60-205ENST00000546345 PLXNC1O60486 1568 aa11.37□□□□□ -0.59
CCDC60-205ENST00000546345 HSPA1LP34931 641 aa11.36□□□□□ -0.59
CCDC60-205ENST00000546345 CNTLNQ9NXG0 1405 aa11.35□□□□□ -0.59
CCDC60-205ENST00000546345 DNMT1P26358 1616 aaKnown RBP11.35□□□□□ -0.59
CCDC60-205ENST00000546345 PLEKHD1A6NEE1 506 aa11.35□□□□□ -0.59
CCDC60-205ENST00000546345 E2F4Q16254 413 aa11.35□□□□□ -0.59
CCDC60-205ENST00000546345 VWDEQ8N2E2 1590 aa11.34□□□□□ -0.59
CCDC60-205ENST00000546345 CPS1P31327 1500 aa11.34□□□□□ -0.59
CCDC60-205ENST00000546345 INO80Q9ULG1 1556 aaPredicted RBP11.33□□□□□ -0.6
CCDC60-205ENST00000546345 XIRP1Q702N8 1843 aaKnown RBP11.32□□□□□ -0.6
CCDC60-205ENST00000546345 RNF17Q9BXT8 1623 aaKnown RBP11.32□□□□□ -0.6
CCDC60-205ENST00000546345 SAMD9LQ8IVG5 1584 aa11.32□□□□□ -0.6
CCDC60-205ENST00000546345 SYNMO15061 1565 aa11.3□□□□□ -0.6
CCDC60-205ENST00000546345 SNPHO15079 494 aa11.3□□□□□ -0.6
CCDC60-205ENST00000546345 CAMK2BQ13554 666 aa11.3□□□□□ -0.6
CCDC60-205ENST00000546345 AFAP1Q8N556 730 aa11.3□□□□□ -0.6
CCDC60-205ENST00000546345 PTPRKQ15262 1439 aa11.29□□□□□ -0.6
CCDC60-205ENST00000546345 DOK7Q18PE1 504 aa11.28□□□□□ -0.6
CCDC60-205ENST00000546345 SHANK2Q9UPX8 1470 aa11.27□□□□□ -0.6
CCDC60-205ENST00000546345 SLC34A2O95436 690 aa11.27□□□□□ -0.61
CCDC60-205ENST00000546345 FAM9AQ8IZU1 332 aaPredicted RBP11.27□□□□□ -0.61
CCDC60-205ENST00000546345 IQGAP1P46940 1657 aa11.27□□□□□ -0.61
CCDC60-205ENST00000546345 TROQ12816 1431 aaPredicted RBP11.26□□□□□ -0.61
CCDC60-205ENST00000546345 A2ML1A8K2U0 1454 aa11.26□□□□□ -0.61
CCDC60-205ENST00000546345 EFCAB2Q5VUJ9 269 aa11.26□□□□□ -0.61
CCDC60-205ENST00000546345 DEPDC5O75140 1603 aa11.26□□□□□ -0.61
CCDC60-205ENST00000546345 ZC3H13Q5T200 1668 aaKnown RBP11.26□□□□□ -0.61
CCDC60-205ENST00000546345 ADGBQ8N7X0 1667 aa11.26□□□□□ -0.61
CCDC60-205ENST00000546345 ATP7AQ04656 1500 aa11.25□□□□□ -0.61
CCDC60-205ENST00000546345 SYCP2Q9BX26 1530 aa11.25□□□□□ -0.61
CCDC60-205ENST00000546345 HOXB3P14651 431 aaPredicted RBP11.25□□□□□ -0.61
CCDC60-205ENST00000546345 PIP4K2BP78356 416 aa11.25□□□□□ -0.61
CCDC60-205ENST00000546345 KCNV2Q8TDN2 545 aa11.25□□□□□ -0.61
CCDC60-205ENST00000546345 EMILIN3Q9NT22 766 aa11.25□□□□□ -0.61
CCDC60-205ENST00000546345 RGS17Q9UGC6 210 aaPredicted RBP11.25□□□□□ -0.61
CCDC60-205ENST00000546345 ZMYM3Q14202 1370 aa11.25□□□□□ -0.61
CCDC60-205ENST00000546345 RIMBP2O15034 1052 aa11.24□□□□□ -0.61
CCDC60-205ENST00000546345 UPF1Q92900 1129 aaKnown RBP eCLIP11.24□□□□□ -0.61
CCDC60-205ENST00000546345 TBC1D12O60347 775 aa11.23□□□□□ -0.61
CCDC60-205ENST00000546345 ZNF710Q8N1W2 664 aa11.23□□□□□ -0.61
CCDC60-205ENST00000546345 PTCD2Q8WV60 388 aaKnown RBP11.23□□□□□ -0.61
CCDC60-205ENST00000546345 ARHGEF1Q92888 912 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms