RNA–Protein interactions for RNA: ENST00000545584.1

CHD4-213, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-213ENST00000545584 TMEM131LA2VDJ0 1609 aa30.11■■■□□ 2.41
CHD4-213ENST00000545584 KCNA6P17658 529 aa30.1■■■□□ 2.41
CHD4-213ENST00000545584 HSPA1LP34931 641 aa30.1■■■□□ 2.41
CHD4-213ENST00000545584 MYO5BQ9ULV0 1848 aa30.1■■■□□ 2.41
CHD4-213ENST00000545584 ZFYVE9O95405 1425 aa30.09■■■□□ 2.41
CHD4-213ENST00000545584 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.08■■■□□ 2.41
CHD4-213ENST00000545584 PLEKHG1Q9ULL1 1385 aa30.06■■■□□ 2.4
CHD4-213ENST00000545584 ALKQ9UM73 1620 aa30.04■■■□□ 2.4
CHD4-213ENST00000545584 SENP3Q9H4L4 574 aaPredicted RBP30.04■■■□□ 2.4
CHD4-213ENST00000545584 NAIPQ13075 1403 aa30.03■■■□□ 2.4
CHD4-213ENST00000545584 PROSER2Q86WR7 435 aaPredicted RBP30.02■■■□□ 2.4
CHD4-213ENST00000545584 TMEM94Q12767 1356 aa30■■■□□ 2.39
CHD4-213ENST00000545584 XIRP1Q702N8 1843 aaKnown RBP29.98■■■□□ 2.39
CHD4-213ENST00000545584 NUTM2DQ5VT03 806 aaPredicted RBP29.97■■■□□ 2.39
CHD4-213ENST00000545584 NKTRP30414 1462 aaKnown RBP29.97■■■□□ 2.39
CHD4-213ENST00000545584 SPHKAPQ2M3C7 1700 aa29.96■■■□□ 2.39
CHD4-213ENST00000545584 NWD1Q149M9 1564 aa29.96■■■□□ 2.39
CHD4-213ENST00000545584 TBX22Q9Y458 520 aa29.96■■■□□ 2.39
CHD4-213ENST00000545584 TRIM52Q96A61 297 aa29.95■■■□□ 2.39
CHD4-213ENST00000545584 HFM1A2PYH4 1435 aa29.95■■■□□ 2.38
CHD4-213ENST00000545584 ILDR2Q71H61 639 aa29.91■■■□□ 2.38
CHD4-213ENST00000545584 RBM33Q96EV2 1170 aaKnown RBP29.91■■■□□ 2.38
CHD4-213ENST00000545584 ZNF326Q5BKZ1 582 aaKnown RBP29.9■■■□□ 2.38
CHD4-213ENST00000545584 CHD2O14647 1828 aaKnown RBP29.89■■■□□ 2.38
CHD4-213ENST00000545584 DIP2AQ14689 1571 aa29.88■■■□□ 2.37
CHD4-213ENST00000545584 MSH6P52701 1360 aa29.88■■■□□ 2.37
CHD4-213ENST00000545584 ADAMTS13Q76LX8 1427 aa29.88■■■□□ 2.37
CHD4-213ENST00000545584 PIK3R4Q99570 1358 aa29.86■■■□□ 2.37
CHD4-213ENST00000545584 FAM135BQ49AJ0 1406 aa29.84■■■□□ 2.37
CHD4-213ENST00000545584 TRPM2O94759 1503 aa29.84■■■□□ 2.37
CHD4-213ENST00000545584 SLC4A1APQ9BWU0 796 aaKnown RBP29.83■■■□□ 2.37
CHD4-213ENST00000545584 MED1Q15648 1581 aaPredicted RBP29.81■■■□□ 2.36
CHD4-213ENST00000545584 CLTCL1P53675 1640 aa29.81■■■□□ 2.36
CHD4-213ENST00000545584 C14orf37Q86TY3 774 aa29.8■■■□□ 2.36
CHD4-213ENST00000545584 NCOA3Q9Y6Q9 1424 aa29.79■■■□□ 2.36
CHD4-213ENST00000545584 KIF1BO60333 1816 aa29.77■■■□□ 2.36
CHD4-213ENST00000545584 AMOTL2Q9Y2J4 779 aa29.75■■■□□ 2.35
CHD4-213ENST00000545584 SETBP1Q9Y6X0 1596 aa29.74■■■□□ 2.35
CHD4-213ENST00000545584 SLAIN2Q9P270 581 aa29.74■■■□□ 2.35
CHD4-213ENST00000545584 SOCS7O14512 581 aa29.73■■■□□ 2.35
CHD4-213ENST00000545584 PHF23Q9BUL5 403 aaPredicted RBP29.73■■■□□ 2.35
CHD4-213ENST00000545584 ROBO1Q9Y6N7 1651 aa29.72■■■□□ 2.35
CHD4-213ENST00000545584 NEXMIFQ5QGS0 1516 aa29.71■■■□□ 2.35
CHD4-213ENST00000545584 NRXN3Q9Y4C0 1643 aa29.7■■■□□ 2.34
CHD4-213ENST00000545584 C19orf44Q9H6X5 657 aa29.69■■■□□ 2.34
CHD4-213ENST00000545584 PTPRUQ92729 1446 aa29.69■■■□□ 2.34
CHD4-213ENST00000545584 ATF3P18847 181 aa29.68■■■□□ 2.34
CHD4-213ENST00000545584 CADPS2Q86UW7 1296 aa29.68■■■□□ 2.34
CHD4-213ENST00000545584 VGFO15240 615 aaPredicted RBP29.67■■■□□ 2.34
CHD4-213ENST00000545584 RPGRIP1LQ68CZ1 1315 aa29.65■■■□□ 2.34
CHD4-213ENST00000545584 ACIN1Q9UKV3 1341 aaKnown RBP29.65■■■□□ 2.34
CHD4-213ENST00000545584 METP08581 1390 aa29.64■■■□□ 2.33
CHD4-213ENST00000545584 FOXD1Q16676 465 aa29.63■■■□□ 2.33
CHD4-213ENST00000545584 MPHOSPH9Q99550 1183 aa29.62■■■□□ 2.33
CHD4-213ENST00000545584 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.62■■■□□ 2.33
CHD4-213ENST00000545584 XRN1Q8IZH2 1706 aaKnown RBP29.61■■■□□ 2.33
CHD4-213ENST00000545584 CCDC144AA2RUR9 1427 aa29.58■■■□□ 2.33
CHD4-213ENST00000545584 PHLPP1O60346 1717 aa29.56■■■□□ 2.32
CHD4-213ENST00000545584 SETD5Q9C0A6 1442 aa29.55■■■□□ 2.32
CHD4-213ENST00000545584 DCCP43146 1447 aa29.54■■■□□ 2.32
CHD4-213ENST00000545584 PPLO60437 1756 aa29.51■■■□□ 2.31
CHD4-213ENST00000545584 JCADQ9P266 1359 aa29.51■■■□□ 2.31
CHD4-213ENST00000545584 RGL3Q3MIN7 710 aa29.49■■■□□ 2.31
CHD4-213ENST00000545584 ADGRL3Q9HAR2 1447 aa29.47■■■□□ 2.31
CHD4-213ENST00000545584 BRINP3Q76B58 766 aa29.46■■■□□ 2.31
CHD4-213ENST00000545584 SETD1AO15047 1707 aaKnown RBP29.45■■■□□ 2.3
CHD4-213ENST00000545584 COL16A1Q07092 1604 aaPredicted RBP29.45■■■□□ 2.3
CHD4-213ENST00000545584 AHDC1Q5TGY3 1603 aaPredicted RBP29.44■■■□□ 2.3
CHD4-213ENST00000545584 PTCH1Q13635 1447 aa29.44■■■□□ 2.3
CHD4-213ENST00000545584 SPATA31E1Q6ZUB1 1445 aa29.44■■■□□ 2.3
CHD4-213ENST00000545584 ANKRD30BQ9BXX2 1392 aa29.43■■■□□ 2.3
CHD4-213ENST00000545584 MST1RQ04912 1400 aa29.43■■■□□ 2.3
CHD4-213ENST00000545584 RAB3GAP2Q9H2M9 1393 aa29.42■■■□□ 2.3
CHD4-213ENST00000545584 RGS17Q9UGC6 210 aaPredicted RBP29.41■■■□□ 2.3
CHD4-213ENST00000545584 ADGRF5Q8IZF2 1346 aa29.41■■■□□ 2.3
CHD4-213ENST00000545584 ROBO2Q9HCK4 1378 aa29.39■■■□□ 2.3
CHD4-213ENST00000545584 NALCNQ8IZF0 1738 aa29.39■■■□□ 2.3
CHD4-213ENST00000545584 ASXL1Q8IXJ9 1541 aa29.38■■■□□ 2.29
CHD4-213ENST00000545584 SPATA31A6Q5VVP1 1343 aa29.38■■■□□ 2.29
CHD4-213ENST00000545584 PRAG1Q86YV5 1406 aa29.37■■■□□ 2.29
CHD4-213ENST00000545584 IFT172Q9UG01 1749 aa29.34■■■□□ 2.29
CHD4-213ENST00000545584 MEX3CQ5U5Q3 659 aaKnown RBP29.31■■■□□ 2.28
CHD4-213ENST00000545584 STK26Q9P289 416 aa29.3■■■□□ 2.28
CHD4-213ENST00000545584 SHPRHQ149N8 1683 aa29.3■■■□□ 2.28
CHD4-213ENST00000545584 C1orf167Q5SNV9 1468 aa29.29■■■□□ 2.28
CHD4-213ENST00000545584 PIK3C2GO75747 1445 aa29.28■■■□□ 2.28
CHD4-213ENST00000545584 NHSL1Q5SYE7 1610 aa29.28■■■□□ 2.28
CHD4-213ENST00000545584 LRRC59Q96AG4 307 aaKnown RBP29.28■■■□□ 2.28
CHD4-213ENST00000545584 POTEAQ6S8J7 498 aa29.27■■■□□ 2.28
CHD4-213ENST00000545584 LRPPRCP42704 1394 aaKnown RBP29.26■■■□□ 2.28
CHD4-213ENST00000545584 HRCP23327 699 aa29.25■■■□□ 2.27
CHD4-213ENST00000545584 TMEM132EQ6IEE7 984 aa29.25■■■□□ 2.27
CHD4-213ENST00000545584 ABCC11Q96J66 1382 aa29.24■■■□□ 2.27
CHD4-213ENST00000545584 LRP6O75581 1613 aa29.23■■■□□ 2.27
CHD4-213ENST00000545584 TECPR2O15040 1411 aa29.23■■■□□ 2.27
CHD4-213ENST00000545584 DDX17Q92841 729 aaKnown RBP29.23■■■□□ 2.27
CHD4-213ENST00000545584 NUTM2BA6NNL0 878 aaPredicted RBP29.22■■■□□ 2.27
CHD4-213ENST00000545584 NUTM2EB1AL46 878 aaPredicted RBP29.22■■■□□ 2.27
CHD4-213ENST00000545584 NUTM2AQ8IVF1 878 aaPredicted RBP29.22■■■□□ 2.27
CHD4-213ENST00000545584 ORAI2Q96SN7 254 aa29.21■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms