RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 MLH3Q9UHC1 1453 aa24.19■■□□□ 1.46
VIM-209ENST00000544301 B4GALNT3Q6L9W6 998 aa24.19■■□□□ 1.46
VIM-209ENST00000544301 EIF3AQ14152 1382 aaKnown RBP24.19■■□□□ 1.46
VIM-209ENST00000544301 SYNMO15061 1565 aa24.17■■□□□ 1.46
VIM-209ENST00000544301 FRMPD1Q5SYB0 1578 aa24.17■■□□□ 1.46
VIM-209ENST00000544301 ABCA6Q8N139 1617 aa24.17■■□□□ 1.46
VIM-209ENST00000544301 IFT172Q9UG01 1749 aa24.17■■□□□ 1.46
VIM-209ENST00000544301 INSRP06213 1382 aa24.17■■□□□ 1.46
VIM-209ENST00000544301 ADGRF5Q8IZF2 1346 aa24.16■■□□□ 1.46
VIM-209ENST00000544301 MROH2AA6NES4 1674 aa24.16■■□□□ 1.46
VIM-209ENST00000544301 CFAP70Q5T0N1 1121 aa24.16■■□□□ 1.46
VIM-209ENST00000544301 HECW2Q9P2P5 1572 aa24.15■■□□□ 1.46
VIM-209ENST00000544301 ZMYM4Q5VZL5 1548 aa24.15■■□□□ 1.46
VIM-209ENST00000544301 KNSTRNQ9Y448 316 aa24.14■■□□□ 1.46
VIM-209ENST00000544301 BLMP54132 1417 aaPredicted RBP24.13■■□□□ 1.45
VIM-209ENST00000544301 NRXN1Q9ULB1 1477 aa24.13■■□□□ 1.45
VIM-209ENST00000544301 MYOM1P52179 1685 aa24.12■■□□□ 1.45
VIM-209ENST00000544301 PDE3BQ13370 1112 aa24.11■■□□□ 1.45
VIM-209ENST00000544301 AMER1Q5JTC6 1135 aaPredicted RBP24.11■■□□□ 1.45
VIM-209ENST00000544301 ADGRB3O60242 1522 aa24.11■■□□□ 1.45
VIM-209ENST00000544301 NPATQ14207 1427 aa24.1■■□□□ 1.45
VIM-209ENST00000544301 SALL2Q9Y467 1007 aaPredicted RBP24.1■■□□□ 1.45
VIM-209ENST00000544301 GGT6Q6P531 493 aa24.09■■□□□ 1.45
VIM-209ENST00000544301 KDM5AP29375 1690 aaKnown RBP24.09■■□□□ 1.45
VIM-209ENST00000544301 NEO1Q92859 1461 aa24.08■■□□□ 1.45
VIM-209ENST00000544301 ASXL1Q8IXJ9 1541 aa24.08■■□□□ 1.45
VIM-209ENST00000544301 SLC24A1O60721 1099 aa24.07■■□□□ 1.44
VIM-209ENST00000544301 PPP2R1AP30153 589 aa24.07■■□□□ 1.44
VIM-209ENST00000544301 NOS1P29475 1434 aa24.06■■□□□ 1.44
VIM-209ENST00000544301 ERVK-7P63135 1459 aa24.05■■□□□ 1.44
VIM-209ENST00000544301 MYT1Q01538 1121 aa24.05■■□□□ 1.44
VIM-209ENST00000544301 ABCC3O15438 1527 aa24.05■■□□□ 1.44
VIM-209ENST00000544301 NPC1L1Q9UHC9 1359 aa24.04■■□□□ 1.44
VIM-209ENST00000544301 CHGAP10645 457 aaKnown RBP24.04■■□□□ 1.44
VIM-209ENST00000544301 RCAN3Q9UKA8 241 aa24.03■■□□□ 1.44
VIM-209ENST00000544301 MYO3AQ8NEV4 1616 aa24.03■■□□□ 1.44
VIM-209ENST00000544301 RAPGEF3O95398 923 aa24.02■■□□□ 1.44
VIM-209ENST00000544301 CFAP65Q6ZU64 1925 aaKnown RBP24.02■■□□□ 1.44
VIM-209ENST00000544301 SETBP1Q9Y6X0 1596 aa24.02■■□□□ 1.44
VIM-209ENST00000544301 RRP1P56182 461 aaKnown RBP24.02■■□□□ 1.44
VIM-209ENST00000544301 PPLO60437 1756 aa24.01■■□□□ 1.43
VIM-209ENST00000544301 ADAMTS8Q9UP79 889 aa24.01■■□□□ 1.43
VIM-209ENST00000544301 CDCA7LQ96GN5 454 aa24.01■■□□□ 1.43
VIM-209ENST00000544301 CCDC136Q96JN2 1154 aa23.99■■□□□ 1.43
VIM-209ENST00000544301 PIK3C2GO75747 1445 aa23.99■■□□□ 1.43
VIM-209ENST00000544301 SBNO2Q9Y2G9 1366 aa23.99■■□□□ 1.43
VIM-209ENST00000544301 CAMSAP1Q5T5Y3 1602 aa23.99■■□□□ 1.43
VIM-209ENST00000544301 DIP2CQ9Y2E4 1556 aa23.98■■□□□ 1.43
VIM-209ENST00000544301 RPGRIP1LQ68CZ1 1315 aa23.97■■□□□ 1.43
VIM-209ENST00000544301 C14orf93Q9H972 538 aaKnown RBP23.96■■□□□ 1.43
VIM-209ENST00000544301 WDR43Q15061 677 aaKnown RBP eCLIP23.95■■□□□ 1.42
VIM-209ENST00000544301 CENPJQ9HC77 1338 aaPredicted RBP23.95■■□□□ 1.42
VIM-209ENST00000544301 SIGLEC1Q9BZZ2 1709 aa23.95■■□□□ 1.42
VIM-209ENST00000544301 FANCIQ9NVI1 1328 aa23.94■■□□□ 1.42
VIM-209ENST00000544301 RICTORQ6R327 1708 aa23.94■■□□□ 1.42
VIM-209ENST00000544301 ADGRB1O14514 1584 aa23.93■■□□□ 1.42
VIM-209ENST00000544301 CARD14Q9BXL6 1004 aa23.93■■□□□ 1.42
VIM-209ENST00000544301 ANP32EQ9BTT0 268 aa23.92■■□□□ 1.42
VIM-209ENST00000544301 PIK3C2BO00750 1634 aa23.92■■□□□ 1.42
VIM-209ENST00000544301 TRAK1Q9UPV9 953 aa23.91■■□□□ 1.42
VIM-209ENST00000544301 ZC3H13Q5T200 1668 aaKnown RBP23.9■■□□□ 1.42
VIM-209ENST00000544301 EXOC6Q8TAG9 804 aa23.89■■□□□ 1.41
VIM-209ENST00000544301 ARHGAP31Q2M1Z3 1444 aa23.88■■□□□ 1.41
VIM-209ENST00000544301 QRICH2Q9H0J4 1663 aa23.88■■□□□ 1.41
VIM-209ENST00000544301 PLEKHH1Q9ULM0 1364 aa23.87■■□□□ 1.41
VIM-209ENST00000544301 TMEM132EQ6IEE7 984 aa23.87■■□□□ 1.41
VIM-209ENST00000544301 YEATS2Q9ULM3 1422 aa23.86■■□□□ 1.41
VIM-209ENST00000544301 NEXMIFQ5QGS0 1516 aa23.85■■□□□ 1.41
VIM-209ENST00000544301 MSH5O43196 834 aa23.84■■□□□ 1.41
VIM-209ENST00000544301 GLI2P10070 1586 aa23.84■■□□□ 1.41
VIM-209ENST00000544301 ZNF521Q96K83 1311 aa23.84■■□□□ 1.41
VIM-209ENST00000544301 VGFO15240 615 aaPredicted RBP23.83■■□□□ 1.4
VIM-209ENST00000544301 CYB5RLQ6IPT4 315 aa23.81■■□□□ 1.4
VIM-209ENST00000544301 IDI1Q13907 227 aa23.8■■□□□ 1.4
VIM-209ENST00000544301 NUTM2DQ5VT03 806 aaPredicted RBP23.8■■□□□ 1.4
VIM-209ENST00000544301 PLIN1O60240 522 aa23.79■■□□□ 1.4
VIM-209ENST00000544301 DUSP27Q5VZP5 1158 aa23.79■■□□□ 1.4
VIM-209ENST00000544301 NSD3Q9BZ95 1437 aa23.79■■□□□ 1.4
VIM-209ENST00000544301 SLC12A5Q9H2X9 1139 aa23.78■■□□□ 1.4
VIM-209ENST00000544301 GOLGA2Q08379 1002 aa23.78■■□□□ 1.4
VIM-209ENST00000544301 CCDC146Q8IYE0 955 aa23.77■■□□□ 1.4
VIM-209ENST00000544301 SLC52A1Q9NWF4 448 aa23.77■■□□□ 1.4
VIM-209ENST00000544301 ARHGEF28Q8N1W1 1705 aaKnown RBP23.76■■□□□ 1.39
VIM-209ENST00000544301 ZFYVE9O95405 1425 aa23.76■■□□□ 1.39
VIM-209ENST00000544301 PREX1Q8TCU6 1659 aa23.74■■□□□ 1.39
VIM-209ENST00000544301 POLR3AO14802 1390 aaPredicted RBP23.74■■□□□ 1.39
VIM-209ENST00000544301 PUS7Q96PZ0 661 aaKnown RBP23.74■■□□□ 1.39
VIM-209ENST00000544301 SLFN5Q08AF3 891 aa23.73■■□□□ 1.39
VIM-209ENST00000544301 APAF1O14727 1248 aa23.72■■□□□ 1.39
VIM-209ENST00000544301 MORC1Q86VD1 984 aa23.72■■□□□ 1.39
VIM-209ENST00000544301 EVC2Q86UK5 1308 aa23.72■■□□□ 1.39
VIM-209ENST00000544301 TULP4Q9NRJ4 1543 aa23.72■■□□□ 1.39
VIM-209ENST00000544301 USP32Q8NFA0 1604 aa23.71■■□□□ 1.39
VIM-209ENST00000544301 CRBNQ96SW2 442 aa23.71■■□□□ 1.39
VIM-209ENST00000544301 FAM69CQ0P6D2 419 aa23.71■■□□□ 1.39
VIM-209ENST00000544301 TRMT2AQ8IZ69 625 aaKnown RBP23.71■■□□□ 1.39
VIM-209ENST00000544301 MYO5BQ9ULV0 1848 aa23.7■■□□□ 1.39
VIM-209ENST00000544301 TMEM131LA2VDJ0 1609 aa23.7■■□□□ 1.39
VIM-209ENST00000544301 RIMBP3CA6NJZ7 1639 aa23.69■■□□□ 1.38
VIM-209ENST00000544301 RIMBP3BA6NNM3 1639 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms