RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 UNC13AQ9UPW8 1703 aa12.69□□□□□ -0.38
PCDH9-204ENST00000544246 CLUAP1Q96AJ1 413 aa12.69□□□□□ -0.38
PCDH9-204ENST00000544246 RDXP35241 583 aaKnown RBP12.69□□□□□ -0.38
PCDH9-204ENST00000544246 TIMELESSQ9UNS1 1208 aa12.68□□□□□ -0.38
PCDH9-204ENST00000544246 HSP90AB2PQ58FF8 381 aa12.68□□□□□ -0.38
PCDH9-204ENST00000544246 FAM13BQ9NYF5 915 aa12.68□□□□□ -0.38
PCDH9-204ENST00000544246 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.68□□□□□ -0.38
PCDH9-204ENST00000544246 GRIN2BQ13224 1484 aa12.68□□□□□ -0.38
PCDH9-204ENST00000544246 GSE1Q14687 1217 aa12.68□□□□□ -0.38
PCDH9-204ENST00000544246 CWC15Q9P013 229 aaKnown RBP12.68□□□□□ -0.38
PCDH9-204ENST00000544246 CCDC173Q0VFZ6 552 aa12.67□□□□□ -0.38
PCDH9-204ENST00000544246 DHX16O60231 1041 aaKnown RBP12.67□□□□□ -0.38
PCDH9-204ENST00000544246 DIAPH3Q9NSV4 1193 aa12.67□□□□□ -0.38
PCDH9-204ENST00000544246 CWC22Q9HCG8 908 aaKnown RBP12.67□□□□□ -0.38
PCDH9-204ENST00000544246 H0YHG0 523 aa12.67□□□□□ -0.38
PCDH9-204ENST00000544246 MYO6Q9UM54 1294 aa12.66□□□□□ -0.38
PCDH9-204ENST00000544246 BICD2Q8TD16 824 aa12.66□□□□□ -0.38
PCDH9-204ENST00000544246 TERF2IPQ9NYB0 399 aa12.66□□□□□ -0.38
PCDH9-204ENST00000544246 APPP05067 770 aa12.66□□□□□ -0.38
PCDH9-204ENST00000544246 RUFY2Q8WXA3 655 aa12.66□□□□□ -0.38
PCDH9-204ENST00000544246 ANO2Q9NQ90 1003 aa12.66□□□□□ -0.38
PCDH9-204ENST00000544246 ERCC4Q92889 916 aaPredicted RBP12.65□□□□□ -0.38
PCDH9-204ENST00000544246 CFTRP13569 1480 aa12.65□□□□□ -0.38
PCDH9-204ENST00000544246 CPLX1O14810 134 aa12.65□□□□□ -0.38
PCDH9-204ENST00000544246 CCDC146Q8IYE0 955 aa12.65□□□□□ -0.38
PCDH9-204ENST00000544246 AMPHP49418 695 aa12.65□□□□□ -0.38
PCDH9-204ENST00000544246 SASS6Q6UVJ0 657 aa12.65□□□□□ -0.38
PCDH9-204ENST00000544246 CAGE1Q8TC20 777 aa12.64□□□□□ -0.39
PCDH9-204ENST00000544246 FHAD1B1AJZ9 1412 aa12.64□□□□□ -0.39
PCDH9-204ENST00000544246 ANKRD45Q5TZF3 282 aa12.64□□□□□ -0.39
PCDH9-204ENST00000544246 ZKSCAN1P17029 563 aaPredicted RBP12.63□□□□□ -0.39
PCDH9-204ENST00000544246 ZFYVE27Q5T4F4 411 aa12.63□□□□□ -0.39
PCDH9-204ENST00000544246 IFT57Q9NWB7 429 aa12.63□□□□□ -0.39
PCDH9-204ENST00000544246 EPS15P42566 896 aa12.63□□□□□ -0.39
PCDH9-204ENST00000544246 ZRSR2Q15696 482 aaKnown RBP12.63□□□□□ -0.39
PCDH9-204ENST00000544246 FAM161AQ3B820 660 aa12.63□□□□□ -0.39
PCDH9-204ENST00000544246 R3HCC1Q9Y3T6 440 aaKnown RBP12.63□□□□□ -0.39
PCDH9-204ENST00000544246 RAPGEF2Q9Y4G8 1499 aa12.63□□□□□ -0.39
PCDH9-204ENST00000544246 PLCD4Q9BRC7 762 aa12.63□□□□□ -0.39
PCDH9-204ENST00000544246 ERICH2A1L162 156 aa12.62□□□□□ -0.39
PCDH9-204ENST00000544246 PDE3BQ13370 1112 aa12.62□□□□□ -0.39
PCDH9-204ENST00000544246 NFXL1Q6ZNB6 911 aa12.62□□□□□ -0.39
PCDH9-204ENST00000544246 CENPQQ7L2Z9 268 aaPredicted RBP12.62□□□□□ -0.39
PCDH9-204ENST00000544246 TSHZ2Q9NRE2 1034 aa12.61□□□□□ -0.39
PCDH9-204ENST00000544246 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.61□□□□□ -0.39
PCDH9-204ENST00000544246 TRDNQ13061 729 aa12.61□□□□□ -0.39
PCDH9-204ENST00000544246 FBXW7Q969H0 707 aa12.61□□□□□ -0.39
PCDH9-204ENST00000544246 NGDNQ8NEJ9 315 aaKnown RBP12.61□□□□□ -0.39
PCDH9-204ENST00000544246 LTV1Q96GA3 475 aaPredicted RBP12.6□□□□□ -0.39
PCDH9-204ENST00000544246 REC8O95072 547 aa12.6□□□□□ -0.39
PCDH9-204ENST00000544246 PKD2Q13563 968 aa12.6□□□□□ -0.39
PCDH9-204ENST00000544246 OLFM4Q6UX06 510 aa12.6□□□□□ -0.39
PCDH9-204ENST00000544246 OFD1O75665 1012 aa12.6□□□□□ -0.39
PCDH9-204ENST00000544246 RNF20Q5VTR2 975 aa12.59□□□□□ -0.39
PCDH9-204ENST00000544246 PHLDB1Q86UU1 1377 aa12.59□□□□□ -0.39
PCDH9-204ENST00000544246 C1orf141Q5JVX7 400 aa12.59□□□□□ -0.39
PCDH9-204ENST00000544246 MSH5O43196 834 aa12.59□□□□□ -0.39
PCDH9-204ENST00000544246 SAFBQ15424 915 aaKnown RBP eCLIP12.59□□□□□ -0.39
PCDH9-204ENST00000544246 CCDC73Q6ZRK6 1079 aa12.59□□□□□ -0.39
PCDH9-204ENST00000544246 FAM43AQ8N2R8 423 aa12.58□□□□□ -0.39
PCDH9-204ENST00000544246 VPS37DQ86XT2 251 aa12.58□□□□□ -0.4
PCDH9-204ENST00000544246 NAT10Q9H0A0 1025 aaKnown RBP12.58□□□□□ -0.4
PCDH9-204ENST00000544246 NEXNQ0ZGT2 675 aa12.58□□□□□ -0.4
PCDH9-204ENST00000544246 CCDC66A2RUB6 948 aa12.58□□□□□ -0.4
PCDH9-204ENST00000544246 PDILTQ8N807 584 aa12.58□□□□□ -0.4
PCDH9-204ENST00000544246 TOPBP1Q92547 1522 aa12.58□□□□□ -0.4
PCDH9-204ENST00000544246 IFIT2P09913 472 aaKnown RBP12.58□□□□□ -0.4
PCDH9-204ENST00000544246 SNAPC4Q5SXM2 1469 aa12.57□□□□□ -0.4
PCDH9-204ENST00000544246 SLC4A3P48751 1232 aa12.57□□□□□ -0.4
PCDH9-204ENST00000544246 SETD5Q9C0A6 1442 aa12.57□□□□□ -0.4
PCDH9-204ENST00000544246 SKIDA1Q1XH10 827 aa12.57□□□□□ -0.4
PCDH9-204ENST00000544246 PRG4Q92954 1404 aaPredicted RBP12.57□□□□□ -0.4
PCDH9-204ENST00000544246 TNIKQ9UKE5 1360 aa12.57□□□□□ -0.4
PCDH9-204ENST00000544246 CGNL1Q0VF96 1302 aa12.57□□□□□ -0.4
PCDH9-204ENST00000544246 TSPYL1Q9H0U9 437 aa12.57□□□□□ -0.4
PCDH9-204ENST00000544246 CCDC39Q9UFE4 941 aa12.57□□□□□ -0.4
PCDH9-204ENST00000544246 BRMS1Q9HCU9 246 aa12.56□□□□□ -0.4
PCDH9-204ENST00000544246 SMC3Q9UQE7 1217 aa12.56□□□□□ -0.4
PCDH9-204ENST00000544246 EID1Q9Y6B2 187 aa12.56□□□□□ -0.4
PCDH9-204ENST00000544246 VPS37CA5D8V6 355 aaPredicted RBP12.56□□□□□ -0.4
PCDH9-204ENST00000544246 HSP90AB3PQ58FF7 597 aa12.56□□□□□ -0.4
PCDH9-204ENST00000544246 PAF1Q8N7H5 531 aa12.56□□□□□ -0.4
PCDH9-204ENST00000544246 PDE4AP27815 886 aa12.56□□□□□ -0.4
PCDH9-204ENST00000544246 LEKR1Q6ZMV7 388 aa12.56□□□□□ -0.4
PCDH9-204ENST00000544246 MTERF4Q7Z6M4 381 aaKnown RBP12.56□□□□□ -0.4
PCDH9-204ENST00000544246 ANKRD18AQ8IVF6 992 aa12.56□□□□□ -0.4
PCDH9-204ENST00000544246 ZKSCAN2Q63HK3 967 aa12.55□□□□□ -0.4
PCDH9-204ENST00000544246 FMN1Q68DA7 1419 aa12.55□□□□□ -0.4
PCDH9-204ENST00000544246 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.55□□□□□ -0.4
PCDH9-204ENST00000544246 WWC2Q6AWC2 1192 aa12.55□□□□□ -0.4
PCDH9-204ENST00000544246 TTC5Q8N0Z6 440 aa12.55□□□□□ -0.4
PCDH9-204ENST00000544246 C9orf78Q9NZ63 289 aaPredicted RBP12.55□□□□□ -0.4
PCDH9-204ENST00000544246 FOSBP53539 338 aa12.54□□□□□ -0.4
PCDH9-204ENST00000544246 CHMP5Q9NZZ3 219 aa12.54□□□□□ -0.4
PCDH9-204ENST00000544246 NEFHP12036 1026 aa12.54□□□□□ -0.4
PCDH9-204ENST00000544246 CCP110O43303 1012 aa12.53□□□□□ -0.4
PCDH9-204ENST00000544246 ERLIN2O94905 339 aa12.53□□□□□ -0.4
PCDH9-204ENST00000544246 TTLL5Q6EMB2 1281 aa12.53□□□□□ -0.4
PCDH9-204ENST00000544246 NLRP13Q86W25 1043 aa12.53□□□□□ -0.4
PCDH9-204ENST00000544246 BCL11BQ9C0K0 894 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms