RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CHGAP10645 457 aaKnown RBP25.5■■□□□ 1.67
CLSTN3-210ENST00000540931 RPGRIP1LQ68CZ1 1315 aa25.5■■□□□ 1.67
CLSTN3-210ENST00000540931 ANKLE2Q86XL3 938 aa25.5■■□□□ 1.67
CLSTN3-210ENST00000540931 STAC3Q96MF2 364 aa25.48■■□□□ 1.67
CLSTN3-210ENST00000540931 TMEM131LA2VDJ0 1609 aa25.48■■□□□ 1.67
CLSTN3-210ENST00000540931 CLTCL1P53675 1640 aa25.48■■□□□ 1.67
CLSTN3-210ENST00000540931 SLIT1O75093 1534 aa25.47■■□□□ 1.67
CLSTN3-210ENST00000540931 TMEM2Q9UHN6 1383 aa25.47■■□□□ 1.67
CLSTN3-210ENST00000540931 ZNF326Q5BKZ1 582 aaKnown RBP25.44■■□□□ 1.66
CLSTN3-210ENST00000540931 ARHGAP23Q9P227 1491 aa25.44■■□□□ 1.66
CLSTN3-210ENST00000540931 VGFO15240 615 aaPredicted RBP25.4■■□□□ 1.66
CLSTN3-210ENST00000540931 TXNDC2Q86VQ3 553 aa25.4■■□□□ 1.66
CLSTN3-210ENST00000540931 SPATA31E1Q6ZUB1 1445 aa25.38■■□□□ 1.65
CLSTN3-210ENST00000540931 PPP1R15AO75807 674 aaPredicted RBP25.38■■□□□ 1.65
CLSTN3-210ENST00000540931 SCAF11Q99590 1463 aaKnown RBP25.38■■□□□ 1.65
CLSTN3-210ENST00000540931 RIMS2Q9UQ26 1411 aa25.37■■□□□ 1.65
CLSTN3-210ENST00000540931 MED14O60244 1454 aa25.36■■□□□ 1.65
CLSTN3-210ENST00000540931 CCER1Q8TC90 406 aaPredicted RBP25.35■■□□□ 1.65
CLSTN3-210ENST00000540931 ZFYVE9O95405 1425 aa25.35■■□□□ 1.65
CLSTN3-210ENST00000540931 POLR1AO95602 1720 aaPredicted RBP25.34■■□□□ 1.65
CLSTN3-210ENST00000540931 MYO5BQ9ULV0 1848 aa25.33■■□□□ 1.64
CLSTN3-210ENST00000540931 RGL3Q3MIN7 710 aa25.32■■□□□ 1.64
CLSTN3-210ENST00000540931 HSPA1LP34931 641 aa25.31■■□□□ 1.64
CLSTN3-210ENST00000540931 TIMELESSQ9UNS1 1208 aa25.31■■□□□ 1.64
CLSTN3-210ENST00000540931 CPS1P31327 1500 aa25.31■■□□□ 1.64
CLSTN3-210ENST00000540931 PLEKHG1Q9ULL1 1385 aa25.31■■□□□ 1.64
CLSTN3-210ENST00000540931 NPHP4O75161 1426 aaPredicted RBP25.29■■□□□ 1.64
CLSTN3-210ENST00000540931 TOM1O60784 492 aa25.29■■□□□ 1.64
CLSTN3-210ENST00000540931 LTKP29376 864 aa25.29■■□□□ 1.64
CLSTN3-210ENST00000540931 NEXMIFQ5QGS0 1516 aa25.28■■□□□ 1.64
CLSTN3-210ENST00000540931 PIP4K2BP78356 416 aa25.27■■□□□ 1.64
CLSTN3-210ENST00000540931 SCAF1Q9H7N4 1312 aaKnown RBP25.26■■□□□ 1.63
CLSTN3-210ENST00000540931 BCANQ96GW7 911 aa25.25■■□□□ 1.63
CLSTN3-210ENST00000540931 PPLO60437 1756 aa25.24■■□□□ 1.63
CLSTN3-210ENST00000540931 MYOM2P54296 1465 aa25.24■■□□□ 1.63
CLSTN3-210ENST00000540931 NEUROD1Q13562 356 aa25.24■■□□□ 1.63
CLSTN3-210ENST00000540931 IQGAP1P46940 1657 aa25.23■■□□□ 1.63
CLSTN3-210ENST00000540931 TONSLQ96HA7 1378 aa25.23■■□□□ 1.63
CLSTN3-210ENST00000540931 SIN3AQ96ST3 1273 aa25.23■■□□□ 1.63
CLSTN3-210ENST00000540931 DCAF11Q8TEB1 546 aa25.22■■□□□ 1.63
CLSTN3-210ENST00000540931 DIP2AQ14689 1571 aa25.22■■□□□ 1.63
CLSTN3-210ENST00000540931 TBX22Q9Y458 520 aa25.21■■□□□ 1.63
CLSTN3-210ENST00000540931 MED1Q15648 1581 aaPredicted RBP25.2■■□□□ 1.62
CLSTN3-210ENST00000540931 IFT172Q9UG01 1749 aa25.2■■□□□ 1.62
CLSTN3-210ENST00000540931 PIK3R4Q99570 1358 aa25.18■■□□□ 1.62
CLSTN3-210ENST00000540931 SETBP1Q9Y6X0 1596 aa25.18■■□□□ 1.62
CLSTN3-210ENST00000540931 ALKQ9UM73 1620 aa25.17■■□□□ 1.62
CLSTN3-210ENST00000540931 NUTM2DQ5VT03 806 aaPredicted RBP25.15■■□□□ 1.62
CLSTN3-210ENST00000540931 NRXN1Q9ULB1 1477 aa25.15■■□□□ 1.62
CLSTN3-210ENST00000540931 L3MBTL2Q969R5 705 aa25.14■■□□□ 1.62
CLSTN3-210ENST00000540931 PIK3C2GO75747 1445 aa25.12■■□□□ 1.61
CLSTN3-210ENST00000540931 KDM2AQ9Y2K7 1162 aa25.12■■□□□ 1.61
CLSTN3-210ENST00000540931 ADGRF5Q8IZF2 1346 aa25.12■■□□□ 1.61
CLSTN3-210ENST00000540931 LAMC1P11047 1609 aa25.11■■□□□ 1.61
CLSTN3-210ENST00000540931 ADAMTS13Q76LX8 1427 aa25.1■■□□□ 1.61
CLSTN3-210ENST00000540931 SLC26A8Q96RN1 970 aa25.09■■□□□ 1.61
CLSTN3-210ENST00000540931 C14orf93Q9H972 538 aaKnown RBP25.09■■□□□ 1.61
CLSTN3-210ENST00000540931 STRCP1A6NGW2 1772 aa25.08■■□□□ 1.6
CLSTN3-210ENST00000540931 LRRC7Q96NW7 1537 aa25.07■■□□□ 1.6
CLSTN3-210ENST00000540931 KCNA6P17658 529 aa25.06■■□□□ 1.6
CLSTN3-210ENST00000540931 NRXN3Q9Y4C0 1643 aa25.04■■□□□ 1.6
CLSTN3-210ENST00000540931 PRAG1Q86YV5 1406 aa25.03■■□□□ 1.6
CLSTN3-210ENST00000540931 KIAA1210Q9ULL0 1709 aa25.02■■□□□ 1.6
CLSTN3-210ENST00000540931 PHF23Q9BUL5 403 aaPredicted RBP25.01■■□□□ 1.59
CLSTN3-210ENST00000540931 NKTRP30414 1462 aaKnown RBP24.99■■□□□ 1.59
CLSTN3-210ENST00000540931 CFAP70Q5T0N1 1121 aa24.97■■□□□ 1.59
CLSTN3-210ENST00000540931 CHD2O14647 1828 aaKnown RBP24.97■■□□□ 1.59
CLSTN3-210ENST00000540931 NWD1Q149M9 1564 aa24.97■■□□□ 1.59
CLSTN3-210ENST00000540931 SIRT1Q96EB6 747 aa24.96■■□□□ 1.59
CLSTN3-210ENST00000540931 SENP3Q9H4L4 574 aaPredicted RBP24.96■■□□□ 1.59
CLSTN3-210ENST00000540931 AMOTL2Q9Y2J4 779 aa24.96■■□□□ 1.59
CLSTN3-210ENST00000540931 NCOA3Q9Y6Q9 1424 aa24.95■■□□□ 1.59
CLSTN3-210ENST00000540931 METP08581 1390 aa24.95■■□□□ 1.59
CLSTN3-210ENST00000540931 SETD1AO15047 1707 aaKnown RBP24.95■■□□□ 1.58
CLSTN3-210ENST00000540931 LRPPRCP42704 1394 aaKnown RBP24.94■■□□□ 1.58
CLSTN3-210ENST00000540931 ABCC11Q96J66 1382 aa24.94■■□□□ 1.58
CLSTN3-210ENST00000540931 TECPR2O15040 1411 aa24.91■■□□□ 1.58
CLSTN3-210ENST00000540931 PTCH1Q13635 1447 aa24.91■■□□□ 1.58
CLSTN3-210ENST00000540931 YTHDC2Q9H6S0 1430 aaKnown RBP24.91■■□□□ 1.58
CLSTN3-210ENST00000540931 PROSER2Q86WR7 435 aaPredicted RBP24.9■■□□□ 1.58
CLSTN3-210ENST00000540931 ROCK2O75116 1388 aaKnown RBP24.89■■□□□ 1.57
CLSTN3-210ENST00000540931 RGS17Q9UGC6 210 aaPredicted RBP24.88■■□□□ 1.57
CLSTN3-210ENST00000540931 XRN1Q8IZH2 1706 aaKnown RBP24.88■■□□□ 1.57
CLSTN3-210ENST00000540931 ADGRB1O14514 1584 aa24.88■■□□□ 1.57
CLSTN3-210ENST00000540931 FAM135BQ49AJ0 1406 aa24.87■■□□□ 1.57
CLSTN3-210ENST00000540931 TMEM132EQ6IEE7 984 aa24.87■■□□□ 1.57
CLSTN3-210ENST00000540931 PTPRUQ92729 1446 aa24.86■■□□□ 1.57
CLSTN3-210ENST00000540931 TRPM1Q7Z4N2 1603 aa24.86■■□□□ 1.57
CLSTN3-210ENST00000540931 XIRP1Q702N8 1843 aaKnown RBP24.86■■□□□ 1.57
CLSTN3-210ENST00000540931 RALGAPBQ86X10 1494 aa24.86■■□□□ 1.57
CLSTN3-210ENST00000540931 GPRASP1Q5JY77 1395 aa24.86■■□□□ 1.57
CLSTN3-210ENST00000540931 ZEB1P37275 1124 aaPredicted RBP24.86■■□□□ 1.57
CLSTN3-210ENST00000540931 KNDC1Q76NI1 1749 aa24.86■■□□□ 1.57
CLSTN3-210ENST00000540931 DLC1Q96QB1 1528 aa24.86■■□□□ 1.57
CLSTN3-210ENST00000540931 EIF3AQ14152 1382 aaKnown RBP24.85■■□□□ 1.57
CLSTN3-210ENST00000540931 NBPF8Q3BBV2 869 aa24.84■■□□□ 1.57
CLSTN3-210ENST00000540931 SLC24A1O60721 1099 aa24.83■■□□□ 1.57
CLSTN3-210ENST00000540931 ASXL1Q8IXJ9 1541 aa24.82■■□□□ 1.56
CLSTN3-210ENST00000540931 STK26Q9P289 416 aa24.82■■□□□ 1.56
CLSTN3-210ENST00000540931 CARD11Q9BXL7 1154 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms