RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 NWD1Q149M9 1564 aa18.25■□□□□ 0.51
CLSTN3-209ENST00000539982 HDGFP51858 240 aaKnown RBP18.24■□□□□ 0.51
CLSTN3-209ENST00000539982 ADGRB3O60242 1522 aa18.23■□□□□ 0.51
CLSTN3-209ENST00000539982 PHLPP1O60346 1717 aa18.23■□□□□ 0.51
CLSTN3-209ENST00000539982 APLP2Q06481 763 aa18.22■□□□□ 0.51
CLSTN3-209ENST00000539982 PLEKHG1Q9ULL1 1385 aa18.2■□□□□ 0.5
CLSTN3-209ENST00000539982 TBX22Q9Y458 520 aa18.2■□□□□ 0.5
CLSTN3-209ENST00000539982 FGD6Q6ZV73 1430 aa18.2■□□□□ 0.5
CLSTN3-209ENST00000539982 PPP1R15AO75807 674 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-209ENST00000539982 ZFYVE9O95405 1425 aa18.19■□□□□ 0.5
CLSTN3-209ENST00000539982 NCOA3Q9Y6Q9 1424 aa18.19■□□□□ 0.5
CLSTN3-209ENST00000539982 SPATA31A6Q5VVP1 1343 aa18.19■□□□□ 0.5
CLSTN3-209ENST00000539982 CHD2O14647 1828 aaKnown RBP18.19■□□□□ 0.5
CLSTN3-209ENST00000539982 SETD1AO15047 1707 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-209ENST00000539982 ZNF772Q68DY9 489 aaPredicted RBP18.17■□□□□ 0.5
CLSTN3-209ENST00000539982 RPRD2Q5VT52 1461 aaKnown RBP18.17■□□□□ 0.5
CLSTN3-209ENST00000539982 RIMS2Q9UQ26 1411 aa18.16■□□□□ 0.5
CLSTN3-209ENST00000539982 MEX3CQ5U5Q3 659 aaKnown RBP18.16■□□□□ 0.5
CLSTN3-209ENST00000539982 COL16A1Q07092 1604 aaPredicted RBP18.16■□□□□ 0.5
CLSTN3-209ENST00000539982 C14orf37Q86TY3 774 aa18.15■□□□□ 0.5
CLSTN3-209ENST00000539982 CADPS2Q86UW7 1296 aa18.15■□□□□ 0.5
CLSTN3-209ENST00000539982 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.15■□□□□ 0.5
CLSTN3-209ENST00000539982 UPF1Q92900 1129 aaKnown RBP eCLIP18.15■□□□□ 0.5
CLSTN3-209ENST00000539982 C19orf44Q9H6X5 657 aa18.15■□□□□ 0.5
CLSTN3-209ENST00000539982 LRP6O75581 1613 aa18.13■□□□□ 0.49
CLSTN3-209ENST00000539982 ATF3P18847 181 aa18.13■□□□□ 0.49
CLSTN3-209ENST00000539982 ADGRL2O95490 1459 aa18.13■□□□□ 0.49
CLSTN3-209ENST00000539982 TRIM52Q96A61 297 aa18.12■□□□□ 0.49
CLSTN3-209ENST00000539982 ANKRD50Q9ULJ7 1429 aa18.12■□□□□ 0.49
CLSTN3-209ENST00000539982 TMEM131LA2VDJ0 1609 aa18.12■□□□□ 0.49
CLSTN3-209ENST00000539982 MYO5BQ9ULV0 1848 aa18.12■□□□□ 0.49
CLSTN3-209ENST00000539982 PIK3R4Q99570 1358 aa18.1■□□□□ 0.49
CLSTN3-209ENST00000539982 CHGAP10645 457 aaKnown RBP18.1■□□□□ 0.49
CLSTN3-209ENST00000539982 GCC2Q8IWJ2 1684 aa18.09■□□□□ 0.49
CLSTN3-209ENST00000539982 ADAMTS13Q76LX8 1427 aa18.09■□□□□ 0.49
CLSTN3-209ENST00000539982 RXRBP28702 533 aa18.09■□□□□ 0.49
CLSTN3-209ENST00000539982 NUTM2DQ5VT03 806 aaPredicted RBP18.09■□□□□ 0.49
CLSTN3-209ENST00000539982 AHDC1Q5TGY3 1603 aaPredicted RBP18.09■□□□□ 0.49
CLSTN3-209ENST00000539982 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.08■□□□□ 0.48
CLSTN3-209ENST00000539982 FAM50AQ14320 339 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-209ENST00000539982 SHPRHQ149N8 1683 aa18.06■□□□□ 0.48
CLSTN3-209ENST00000539982 BRINP3Q76B58 766 aa18.06■□□□□ 0.48
CLSTN3-209ENST00000539982 AMOTL2Q9Y2J4 779 aa18.06■□□□□ 0.48
CLSTN3-209ENST00000539982 DIP2AQ14689 1571 aa18.04■□□□□ 0.48
CLSTN3-209ENST00000539982 NUTM2BA6NNL0 878 aaPredicted RBP18.04■□□□□ 0.48
CLSTN3-209ENST00000539982 NUTM2EB1AL46 878 aaPredicted RBP18.04■□□□□ 0.48
CLSTN3-209ENST00000539982 NUTM2AQ8IVF1 878 aaPredicted RBP18.04■□□□□ 0.48
CLSTN3-209ENST00000539982 CDK12Q9NYV4 1490 aaPredicted RBP18.01■□□□□ 0.47
CLSTN3-209ENST00000539982 AFF2P51816 1311 aa18■□□□□ 0.47
CLSTN3-209ENST00000539982 PTPRUQ92729 1446 aa18■□□□□ 0.47
CLSTN3-209ENST00000539982 TRPM2O94759 1503 aa18■□□□□ 0.47
CLSTN3-209ENST00000539982 DCCP43146 1447 aa17.99■□□□□ 0.47
CLSTN3-209ENST00000539982 LRRC59Q96AG4 307 aaKnown RBP17.99■□□□□ 0.47
CLSTN3-209ENST00000539982 UNC13BO14795 1591 aa17.99■□□□□ 0.47
CLSTN3-209ENST00000539982 E9PCH4 1651 aa17.99■□□□□ 0.47
CLSTN3-209ENST00000539982 SETD5Q9C0A6 1442 aa17.98■□□□□ 0.47
CLSTN3-209ENST00000539982 QTRT2Q9H974 415 aaKnown RBP17.96■□□□□ 0.47
CLSTN3-209ENST00000539982 ASXL1Q8IXJ9 1541 aa17.96■□□□□ 0.47
CLSTN3-209ENST00000539982 RBM6P78332 1123 aaKnown RBP17.95■□□□□ 0.46
CLSTN3-209ENST00000539982 MST1RQ04912 1400 aa17.95■□□□□ 0.46
CLSTN3-209ENST00000539982 NUP155O75694 1391 aa17.93■□□□□ 0.46
CLSTN3-209ENST00000539982 C8orf37Q96NL8 207 aa17.93■□□□□ 0.46
CLSTN3-209ENST00000539982 ROCK1Q13464 1354 aa17.92■□□□□ 0.46
CLSTN3-209ENST00000539982 IQGAP3Q86VI3 1631 aa17.92■□□□□ 0.46
CLSTN3-209ENST00000539982 NHSL1Q5SYE7 1610 aa17.91■□□□□ 0.46
CLSTN3-209ENST00000539982 XRN1Q8IZH2 1706 aaKnown RBP17.9■□□□□ 0.46
CLSTN3-209ENST00000539982 DDX17Q92841 729 aaKnown RBP17.9■□□□□ 0.46
CLSTN3-209ENST00000539982 METP08581 1390 aa17.9■□□□□ 0.46
CLSTN3-209ENST00000539982 PNPLA6Q8IY17 1366 aa17.9■□□□□ 0.46
CLSTN3-209ENST00000539982 SETBP1Q9Y6X0 1596 aa17.89■□□□□ 0.45
CLSTN3-209ENST00000539982 ZNF326Q5BKZ1 582 aaKnown RBP17.89■□□□□ 0.45
CLSTN3-209ENST00000539982 NRXN3Q9Y4C0 1643 aa17.89■□□□□ 0.45
CLSTN3-209ENST00000539982 RGS12O14924 1447 aa17.89■□□□□ 0.45
CLSTN3-209ENST00000539982 NGLY1Q96IV0 654 aa17.88■□□□□ 0.45
CLSTN3-209ENST00000539982 ADGRL3Q9HAR2 1447 aa17.87■□□□□ 0.45
CLSTN3-209ENST00000539982 ADAMTS2O95450 1211 aa17.85■□□□□ 0.45
CLSTN3-209ENST00000539982 C1orf167Q5SNV9 1468 aa17.82■□□□□ 0.44
CLSTN3-209ENST00000539982 ATAD2Q6PL18 1390 aa17.82■□□□□ 0.44
CLSTN3-209ENST00000539982 USP21Q9UK80 565 aa17.82■□□□□ 0.44
CLSTN3-209ENST00000539982 SOS2Q07890 1332 aaPredicted RBP17.81■□□□□ 0.44
CLSTN3-209ENST00000539982 TRPC5Q9UL62 973 aaPredicted RBP17.81■□□□□ 0.44
CLSTN3-209ENST00000539982 ITGAEP38570 1179 aa17.8■□□□□ 0.44
CLSTN3-209ENST00000539982 FOXD1Q16676 465 aa17.8■□□□□ 0.44
CLSTN3-209ENST00000539982 FNBP4Q8N3X1 1017 aaPredicted RBP17.8■□□□□ 0.44
CLSTN3-209ENST00000539982 ORAI2Q96SN7 254 aa17.8■□□□□ 0.44
CLSTN3-209ENST00000539982 SPHKAPQ2M3C7 1700 aa17.8■□□□□ 0.44
CLSTN3-209ENST00000539982 SRCAPQ6ZRS2 3230 aa17.79■□□□□ 0.44
CLSTN3-209ENST00000539982 NALCNQ8IZF0 1738 aa17.79■□□□□ 0.44
CLSTN3-209ENST00000539982 LAMC1P11047 1609 aa17.78■□□□□ 0.44
CLSTN3-209ENST00000539982 PTCH1Q13635 1447 aa17.77■□□□□ 0.44
CLSTN3-209ENST00000539982 NEXMIFQ5QGS0 1516 aa17.77■□□□□ 0.43
CLSTN3-209ENST00000539982 ZRANB1Q9UGI0 708 aa17.76■□□□□ 0.43
CLSTN3-209ENST00000539982 VGFO15240 615 aaPredicted RBP17.75■□□□□ 0.43
CLSTN3-209ENST00000539982 CCDC125Q86Z20 511 aa17.74■□□□□ 0.43
CLSTN3-209ENST00000539982 ROBO2Q9HCK4 1378 aa17.74■□□□□ 0.43
CLSTN3-209ENST00000539982 ATRNO75882 1429 aa17.73■□□□□ 0.43
CLSTN3-209ENST00000539982 CLTCL1P53675 1640 aa17.72■□□□□ 0.43
CLSTN3-209ENST00000539982 KIF1BO60333 1816 aa17.7■□□□□ 0.42
CLSTN3-209ENST00000539982 COL22A1Q8NFW1 1626 aaPredicted RBP17.69■□□□□ 0.42
CLSTN3-209ENST00000539982 ESCO1Q5FWF5 840 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms