RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 NRXN3Q9Y4C0 1643 aa19.09■□□□□ 0.65
CCDC42-202ENST00000539522 CHGAP10645 457 aaKnown RBP19.08■□□□□ 0.64
CCDC42-202ENST00000539522 SCAF11Q99590 1463 aaKnown RBP19.08■□□□□ 0.64
CCDC42-202ENST00000539522 IQGAP1P46940 1657 aa19.07■□□□□ 0.64
CCDC42-202ENST00000539522 NUTM2DQ5VT03 806 aaPredicted RBP19.05■□□□□ 0.64
CCDC42-202ENST00000539522 STAG3Q9UJ98 1225 aa19.05■□□□□ 0.64
CCDC42-202ENST00000539522 SETD1AO15047 1707 aaKnown RBP19.03■□□□□ 0.64
CCDC42-202ENST00000539522 TXNDC2Q86VQ3 553 aa19.03■□□□□ 0.64
CCDC42-202ENST00000539522 RGL3Q3MIN7 710 aa19.02■□□□□ 0.64
CCDC42-202ENST00000539522 NPHP4O75161 1426 aaPredicted RBP19.01■□□□□ 0.63
CCDC42-202ENST00000539522 ANKLE2Q86XL3 938 aa19.01■□□□□ 0.63
CCDC42-202ENST00000539522 ADAMTS13Q76LX8 1427 aa19■□□□□ 0.63
CCDC42-202ENST00000539522 NRXN1Q9ULB1 1477 aa19■□□□□ 0.63
CCDC42-202ENST00000539522 SETBP1Q9Y6X0 1596 aa19■□□□□ 0.63
CCDC42-202ENST00000539522 STRCP1A6NGW2 1772 aa18.99■□□□□ 0.63
CCDC42-202ENST00000539522 PLEKHG1Q9ULL1 1385 aa18.99■□□□□ 0.63
CCDC42-202ENST00000539522 ZNF326Q5BKZ1 582 aaKnown RBP18.99■□□□□ 0.63
CCDC42-202ENST00000539522 MYOM2P54296 1465 aa18.98■□□□□ 0.63
CCDC42-202ENST00000539522 RPGRIP1LQ68CZ1 1315 aa18.98■□□□□ 0.63
CCDC42-202ENST00000539522 ADGRF5Q8IZF2 1346 aa18.98■□□□□ 0.63
CCDC42-202ENST00000539522 SENP3Q9H4L4 574 aaPredicted RBP18.97■□□□□ 0.63
CCDC42-202ENST00000539522 NEUROD1Q13562 356 aa18.95■□□□□ 0.62
CCDC42-202ENST00000539522 PIK3C2GO75747 1445 aa18.94■□□□□ 0.62
CCDC42-202ENST00000539522 EID1Q9Y6B2 187 aa18.94■□□□□ 0.62
CCDC42-202ENST00000539522 ASXL1Q8IXJ9 1541 aa18.94■□□□□ 0.62
CCDC42-202ENST00000539522 ALKQ9UM73 1620 aa18.93■□□□□ 0.62
CCDC42-202ENST00000539522 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.93■□□□□ 0.62
CCDC42-202ENST00000539522 L3MBTL2Q969R5 705 aa18.92■□□□□ 0.62
CCDC42-202ENST00000539522 CHD2O14647 1828 aaKnown RBP18.91■□□□□ 0.62
CCDC42-202ENST00000539522 DIP2AQ14689 1571 aa18.91■□□□□ 0.62
CCDC42-202ENST00000539522 SLC26A8Q96RN1 970 aa18.91■□□□□ 0.62
CCDC42-202ENST00000539522 LTBP4Q8N2S1 1624 aa18.91■□□□□ 0.62
CCDC42-202ENST00000539522 CLSPNQ9HAW4 1339 aa18.91■□□□□ 0.62
CCDC42-202ENST00000539522 DCAF11Q8TEB1 546 aa18.9■□□□□ 0.62
CCDC42-202ENST00000539522 PTPRUQ92729 1446 aa18.9■□□□□ 0.62
CCDC42-202ENST00000539522 CCER1Q8TC90 406 aaPredicted RBP18.89■□□□□ 0.61
CCDC42-202ENST00000539522 METP08581 1390 aa18.89■□□□□ 0.61
CCDC42-202ENST00000539522 NWD1Q149M9 1564 aa18.89■□□□□ 0.61
CCDC42-202ENST00000539522 VGFO15240 615 aaPredicted RBP18.88■□□□□ 0.61
CCDC42-202ENST00000539522 PPP1R15AO75807 674 aaPredicted RBP18.88■□□□□ 0.61
CCDC42-202ENST00000539522 HDGFP51858 240 aaKnown RBP18.87■□□□□ 0.61
CCDC42-202ENST00000539522 PRAG1Q86YV5 1406 aa18.87■□□□□ 0.61
CCDC42-202ENST00000539522 XRN1Q8IZH2 1706 aaKnown RBP18.87■□□□□ 0.61
CCDC42-202ENST00000539522 ZNF335Q9H4Z2 1342 aaPredicted RBP18.87■□□□□ 0.61
CCDC42-202ENST00000539522 KDM2AQ9Y2K7 1162 aa18.87■□□□□ 0.61
CCDC42-202ENST00000539522 ADGRB1O14514 1584 aa18.86■□□□□ 0.61
CCDC42-202ENST00000539522 TBX22Q9Y458 520 aa18.86■□□□□ 0.61
CCDC42-202ENST00000539522 DMRT2Q9Y5R5 561 aa18.86■□□□□ 0.61
CCDC42-202ENST00000539522 XIRP1Q702N8 1843 aaKnown RBP18.85■□□□□ 0.61
CCDC42-202ENST00000539522 LAMC1P11047 1609 aa18.85■□□□□ 0.61
CCDC42-202ENST00000539522 KIAA1210Q9ULL0 1709 aa18.84■□□□□ 0.61
CCDC42-202ENST00000539522 TRPM1Q7Z4N2 1603 aa18.84■□□□□ 0.61
CCDC42-202ENST00000539522 NBPF8Q3BBV2 869 aa18.83■□□□□ 0.6
CCDC42-202ENST00000539522 CFAP70Q5T0N1 1121 aa18.82■□□□□ 0.6
CCDC42-202ENST00000539522 C14orf93Q9H972 538 aaKnown RBP18.82■□□□□ 0.6
CCDC42-202ENST00000539522 TONSLQ96HA7 1378 aa18.8■□□□□ 0.6
CCDC42-202ENST00000539522 BCANQ96GW7 911 aa18.79■□□□□ 0.6
CCDC42-202ENST00000539522 KNDC1Q76NI1 1749 aa18.79■□□□□ 0.6
CCDC42-202ENST00000539522 PIK3R4Q99570 1358 aa18.79■□□□□ 0.6
CCDC42-202ENST00000539522 TMEM132EQ6IEE7 984 aa18.78■□□□□ 0.6
CCDC42-202ENST00000539522 STAC3Q96MF2 364 aa18.78■□□□□ 0.6
CCDC42-202ENST00000539522 LRRC7Q96NW7 1537 aa18.77■□□□□ 0.6
CCDC42-202ENST00000539522 KCNA6P17658 529 aa18.76■□□□□ 0.59
CCDC42-202ENST00000539522 NBPF1Q3BBV0 1214 aa18.76■□□□□ 0.59
CCDC42-202ENST00000539522 NKTRP30414 1462 aaKnown RBP18.75■□□□□ 0.59
CCDC42-202ENST00000539522 TECPR2O15040 1411 aa18.74■□□□□ 0.59
CCDC42-202ENST00000539522 CPS1P31327 1500 aa18.74■□□□□ 0.59
CCDC42-202ENST00000539522 YTHDC2Q9H6S0 1430 aaKnown RBP18.74■□□□□ 0.59
CCDC42-202ENST00000539522 ROBO2Q9HCK4 1378 aa18.73■□□□□ 0.59
CCDC42-202ENST00000539522 AMOTL2Q9Y2J4 779 aa18.73■□□□□ 0.59
CCDC42-202ENST00000539522 ARHGEF28Q8N1W1 1705 aaKnown RBP18.73■□□□□ 0.59
CCDC42-202ENST00000539522 LRPPRCP42704 1394 aaKnown RBP18.72■□□□□ 0.59
CCDC42-202ENST00000539522 RALGAPBQ86X10 1494 aa18.71■□□□□ 0.59
CCDC42-202ENST00000539522 RBM33Q96EV2 1170 aaKnown RBP18.71■□□□□ 0.59
CCDC42-202ENST00000539522 TIMELESSQ9UNS1 1208 aa18.71■□□□□ 0.59
CCDC42-202ENST00000539522 PTCH1Q13635 1447 aa18.7■□□□□ 0.58
CCDC42-202ENST00000539522 NALCNQ8IZF0 1738 aa18.7■□□□□ 0.58
CCDC42-202ENST00000539522 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.7■□□□□ 0.58
CCDC42-202ENST00000539522 GPRASP1Q5JY77 1395 aa18.69■□□□□ 0.58
CCDC42-202ENST00000539522 ABCC11Q96J66 1382 aa18.69■□□□□ 0.58
CCDC42-202ENST00000539522 PLEKHH1Q9ULM0 1364 aa18.69■□□□□ 0.58
CCDC42-202ENST00000539522 ZEB1P37275 1124 aaPredicted RBP18.69■□□□□ 0.58
CCDC42-202ENST00000539522 DLC1Q96QB1 1528 aa18.69■□□□□ 0.58
CCDC42-202ENST00000539522 TMEM94Q12767 1356 aa18.67■□□□□ 0.58
CCDC42-202ENST00000539522 STK26Q9P289 416 aa18.66■□□□□ 0.58
CCDC42-202ENST00000539522 WAPLQ7Z5K2 1190 aa18.64■□□□□ 0.57
CCDC42-202ENST00000539522 CERKQ8TCT0 537 aa18.63■□□□□ 0.57
CCDC42-202ENST00000539522 FAM135BQ49AJ0 1406 aa18.63■□□□□ 0.57
CCDC42-202ENST00000539522 PROSER2Q86WR7 435 aaPredicted RBP18.62■□□□□ 0.57
CCDC42-202ENST00000539522 TRAK1Q9UPV9 953 aa18.62■□□□□ 0.57
CCDC42-202ENST00000539522 IQSEC2Q5JU85 1478 aa18.62■□□□□ 0.57
CCDC42-202ENST00000539522 ROCK2O75116 1388 aaKnown RBP18.61■□□□□ 0.57
CCDC42-202ENST00000539522 SIRT1Q96EB6 747 aa18.6■□□□□ 0.57
CCDC42-202ENST00000539522 NCOA3Q9Y6Q9 1424 aa18.59■□□□□ 0.57
CCDC42-202ENST00000539522 QRICH2Q9H0J4 1663 aa18.59■□□□□ 0.57
CCDC42-202ENST00000539522 ADGRL3Q9HAR2 1447 aa18.58■□□□□ 0.57
CCDC42-202ENST00000539522 PRAM1Q96QH2 718 aa18.58■□□□□ 0.56
CCDC42-202ENST00000539522 ADGRB2O60241 1585 aa18.58■□□□□ 0.56
CCDC42-202ENST00000539522 CDC42BPGQ6DT37 1551 aa18.55■□□□□ 0.56
CCDC42-202ENST00000539522 FMN2Q9NZ56 1722 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms