RNA–Protein interactions for RNA: ENST00000538548.5

SFSWAP-207, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 2,636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-207ENST00000538548 RRAGDQ9NQL2 400 aaPredicted RBP23.95■■□□□ 1.42
SFSWAP-207ENST00000538548 SHROOM2Q13796 1616 aa23.94■■□□□ 1.42
SFSWAP-207ENST00000538548 MAPK8IP3Q9UPT6 1336 aa23.93■■□□□ 1.42
SFSWAP-207ENST00000538548 NKTRP30414 1462 aaKnown RBP23.93■■□□□ 1.42
SFSWAP-207ENST00000538548 HNRNPMP52272 730 aaKnown RBP eCLIP23.93■■□□□ 1.42
SFSWAP-207ENST00000538548 RGL3Q3MIN7 710 aa23.93■■□□□ 1.42
SFSWAP-207ENST00000538548 ARHGEF5Q12774 1597 aa23.92■■□□□ 1.42
SFSWAP-207ENST00000538548 KNSTRNQ9Y448 316 aa23.9■■□□□ 1.42
SFSWAP-207ENST00000538548 WDR7Q9Y4E6 1490 aa23.9■■□□□ 1.42
SFSWAP-207ENST00000538548 MAGI2Q86UL8 1455 aa23.89■■□□□ 1.42
SFSWAP-207ENST00000538548 NLRP1Q9C000 1473 aa23.89■■□□□ 1.42
SFSWAP-207ENST00000538548 IGHDP01880 384 aa23.89■■□□□ 1.42
SFSWAP-207ENST00000538548 ANTXR1Q9H6X2 564 aa23.89■■□□□ 1.42
SFSWAP-207ENST00000538548 CCDC141Q6ZP82 1450 aa23.89■■□□□ 1.41
SFSWAP-207ENST00000538548 SLKQ9H2G2 1235 aaPredicted RBP23.89■■□□□ 1.41
SFSWAP-207ENST00000538548 PLA2R1Q13018 1463 aa23.89■■□□□ 1.41
SFSWAP-207ENST00000538548 CGNL1Q0VF96 1302 aa23.88■■□□□ 1.41
SFSWAP-207ENST00000538548 SEC24BO95487 1268 aa23.88■■□□□ 1.41
SFSWAP-207ENST00000538548 PIK3C2GO75747 1445 aa23.88■■□□□ 1.41
SFSWAP-207ENST00000538548 MYO5CQ9NQX4 1742 aa23.87■■□□□ 1.41
SFSWAP-207ENST00000538548 AMER1Q5JTC6 1135 aaPredicted RBP23.86■■□□□ 1.41
SFSWAP-207ENST00000538548 BCAR3O75815 825 aa23.86■■□□□ 1.41
SFSWAP-207ENST00000538548 ABCC2Q92887 1545 aa23.85■■□□□ 1.41
SFSWAP-207ENST00000538548 PDE3AQ14432 1141 aa23.85■■□□□ 1.41
SFSWAP-207ENST00000538548 NINLQ9Y2I6 1382 aa23.85■■□□□ 1.41
SFSWAP-207ENST00000538548 OSCARQ8IYS5 282 aa23.84■■□□□ 1.41
SFSWAP-207ENST00000538548 RNF17Q9BXT8 1623 aaKnown RBP23.84■■□□□ 1.41
SFSWAP-207ENST00000538548 E9PSI1 815 aa23.83■■□□□ 1.41
SFSWAP-207ENST00000538548 SPINK5Q9NQ38 1064 aaPredicted RBP23.83■■□□□ 1.41
SFSWAP-207ENST00000538548 CLUAP1Q96AJ1 413 aa23.82■■□□□ 1.4
SFSWAP-207ENST00000538548 GLIPR1L2Q4G1C9 344 aa23.82■■□□□ 1.4
SFSWAP-207ENST00000538548 UPF2Q9HAU5 1272 aaKnown RBP23.8■■□□□ 1.4
SFSWAP-207ENST00000538548 UNC13BO14795 1591 aa23.8■■□□□ 1.4
SFSWAP-207ENST00000538548 SYNMO15061 1565 aa23.8■■□□□ 1.4
SFSWAP-207ENST00000538548 ZMYM3Q14202 1370 aa23.8■■□□□ 1.4
SFSWAP-207ENST00000538548 ASXL1Q8IXJ9 1541 aa23.8■■□□□ 1.4
SFSWAP-207ENST00000538548 FSD2A1L4K1 749 aa23.8■■□□□ 1.4
SFSWAP-207ENST00000538548 GOLGA6L3A6NEY3 463 aa23.8■■□□□ 1.4
SFSWAP-207ENST00000538548 XRCC6P12956 609 aaKnown RBP eCLIP23.79■■□□□ 1.4
SFSWAP-207ENST00000538548 CCDC146Q8IYE0 955 aa23.79■■□□□ 1.4
SFSWAP-207ENST00000538548 APAF1O14727 1248 aa23.78■■□□□ 1.4
SFSWAP-207ENST00000538548 NGEFQ8N5V2 710 aa23.78■■□□□ 1.4
SFSWAP-207ENST00000538548 TBC1D32Q96NH3 1257 aa23.78■■□□□ 1.4
SFSWAP-207ENST00000538548 NPC1L1Q9UHC9 1359 aa23.78■■□□□ 1.4
SFSWAP-207ENST00000538548 PLXNC1O60486 1568 aa23.77■■□□□ 1.4
SFSWAP-207ENST00000538548 CLCN1P35523 988 aa23.77■■□□□ 1.4
SFSWAP-207ENST00000538548 TBC1D2Q9BYX2 928 aa23.76■■□□□ 1.39
SFSWAP-207ENST00000538548 PNNQ9H307 717 aaKnown RBP23.76■■□□□ 1.39
SFSWAP-207ENST00000538548 CDCA8Q53HL2 280 aa23.76■■□□□ 1.39
SFSWAP-207ENST00000538548 ATP10AO60312 1499 aa23.75■■□□□ 1.39
SFSWAP-207ENST00000538548 RSPH4AQ5TD94 716 aa23.74■■□□□ 1.39
SFSWAP-207ENST00000538548 TTC37Q6PGP7 1564 aa23.74■■□□□ 1.39
SFSWAP-207ENST00000538548 CENPJQ9HC77 1338 aaPredicted RBP23.73■■□□□ 1.39
SFSWAP-207ENST00000538548 AAMPQ13685 434 aa23.73■■□□□ 1.39
SFSWAP-207ENST00000538548 IQGAP3Q86VI3 1631 aa23.73■■□□□ 1.39
SFSWAP-207ENST00000538548 COG6Q9Y2V7 657 aa23.73■■□□□ 1.39
SFSWAP-207ENST00000538548 NAP1L5Q96NT1 182 aaPredicted RBP23.72■■□□□ 1.39
SFSWAP-207ENST00000538548 IQGAP1P46940 1657 aa23.72■■□□□ 1.39
SFSWAP-207ENST00000538548 CANXP27824 592 aaKnown RBP23.72■■□□□ 1.39
SFSWAP-207ENST00000538548 MCM4P33991 863 aa23.72■■□□□ 1.39
SFSWAP-207ENST00000538548 PMFBP1Q8TBY8 1022 aa23.72■■□□□ 1.39
SFSWAP-207ENST00000538548 SAMD9LQ8IVG5 1584 aa23.71■■□□□ 1.39
SFSWAP-207ENST00000538548 PANK1Q8TE04 598 aa23.71■■□□□ 1.39
SFSWAP-207ENST00000538548 PKNOX2Q96KN3 472 aa23.7■■□□□ 1.38
SFSWAP-207ENST00000538548 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.7■■□□□ 1.386e-7■□□□□ 10.6
SFSWAP-207ENST00000538548 ZCCHC11Q5TAX3 1644 aaKnown RBP23.69■■□□□ 1.38
SFSWAP-207ENST00000538548 DMRT2Q9Y5R5 561 aa23.68■■□□□ 1.38
SFSWAP-207ENST00000538548 ARHGAP5Q13017 1502 aa23.68■■□□□ 1.38
SFSWAP-207ENST00000538548 ARXQ96QS3 562 aa23.67■■□□□ 1.38
SFSWAP-207ENST00000538548 PANK2Q9BZ23 570 aa23.67■■□□□ 1.38
SFSWAP-207ENST00000538548 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.67■■□□□ 1.386e-7■■■□□ 16.9
SFSWAP-207ENST00000538548 RRP9O43818 475 aaKnown RBP23.66■■□□□ 1.38
SFSWAP-207ENST00000538548 MAST1Q9Y2H9 1570 aa23.66■■□□□ 1.38
SFSWAP-207ENST00000538548 MYOM1P52179 1685 aa23.66■■□□□ 1.38
SFSWAP-207ENST00000538548 CDC42BPBQ9Y5S2 1711 aa23.66■■□□□ 1.38
SFSWAP-207ENST00000538548 MRE11P49959 708 aa23.65■■□□□ 1.38
SFSWAP-207ENST00000538548 HSP90AA1P07900 732 aaKnown RBP23.65■■□□□ 1.38
SFSWAP-207ENST00000538548 MADDQ8WXG6 1647 aa23.65■■□□□ 1.38
SFSWAP-207ENST00000538548 PREX2Q70Z35 1606 aa23.64■■□□□ 1.38
SFSWAP-207ENST00000538548 HSP90AA2PQ14568 343 aaPredicted RBP23.64■■□□□ 1.37
SFSWAP-207ENST00000538548 GZF1Q9H116 711 aaPredicted RBP23.63■■□□□ 1.37
SFSWAP-207ENST00000538548 CHMP5Q9NZZ3 219 aa23.63■■□□□ 1.37
SFSWAP-207ENST00000538548 SCAF11Q99590 1463 aaKnown RBP23.63■■□□□ 1.37
SFSWAP-207ENST00000538548 TRAK2O60296 914 aa23.62■■□□□ 1.37
SFSWAP-207ENST00000538548 PDZRN3Q9UPQ7 1066 aa23.62■■□□□ 1.37
SFSWAP-207ENST00000538548 WWC1Q8IX03 1113 aa23.61■■□□□ 1.37
SFSWAP-207ENST00000538548 PCDHB15Q9Y5E8 787 aa23.61■■□□□ 1.37
SFSWAP-207ENST00000538548 SYCP2Q9BX26 1530 aa23.61■■□□□ 1.37
SFSWAP-207ENST00000538548 SCAPERQ9BY12 1400 aa23.61■■□□□ 1.37
SFSWAP-207ENST00000538548 ISY1Q9ULR0 285 aaKnown RBP23.61■■□□□ 1.37
SFSWAP-207ENST00000538548 RWDD1Q9H446 243 aaPredicted RBP23.58■■□□□ 1.37
SFSWAP-207ENST00000538548 RARSP54136 660 aaKnown RBP23.58■■□□□ 1.36
SFSWAP-207ENST00000538548 AFAP1Q8N556 730 aa23.58■■□□□ 1.36
SFSWAP-207ENST00000538548 SPRYD3Q8NCJ5 442 aa23.57■■□□□ 1.36
SFSWAP-207ENST00000538548 MYH16Q9H6N6 1097 aa23.57■■□□□ 1.36
SFSWAP-207ENST00000538548 KDM5AP29375 1690 aaKnown RBP23.56■■□□□ 1.36
SFSWAP-207ENST00000538548 VSIG10Q8N0Z9 540 aa23.56■■□□□ 1.36
SFSWAP-207ENST00000538548 RTEL1-TNFRSF6BF6WH68 1400 aa23.56■■□□□ 1.36
SFSWAP-207ENST00000538548 DDX11L8A8MPP1 907 aa23.56■■□□□ 1.36
SFSWAP-207ENST00000538548 GRPEL1Q9HAV7 217 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms