RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 TIMELESSQ9UNS1 1208 aa9.4□□□□□ -0.9
USP28-207ENST00000538475 WNT2BQ93097 391 aa9.39□□□□□ -0.91
USP28-207ENST00000538475 SEPT9Q9UHD8 586 aaPredicted RBP9.39□□□□□ -0.91
USP28-207ENST00000538475 TSKSQ9UJT2 592 aa9.39□□□□□ -0.91
USP28-207ENST00000538475 SMARCA4P51532 1647 aa9.38□□□□□ -0.91
USP28-207ENST00000538475 LAPTM4BQ86VI4 370 aa9.38□□□□□ -0.91
USP28-207ENST00000538475 HCSTQ9UBK5 93 aa9.38□□□□□ -0.91
USP28-207ENST00000538475 SOGA1O94964 1423 aa9.38□□□□□ -0.91
USP28-207ENST00000538475 RRBP1Q9P2E9 1410 aaKnown RBP9.38□□□□□ -0.91
USP28-207ENST00000538475 TULP1O00294 542 aaPredicted RBP9.37□□□□□ -0.91
USP28-207ENST00000538475 UBTFP17480 764 aaKnown RBP9.37□□□□□ -0.91
USP28-207ENST00000538475 PTPN5P54829 565 aa9.36□□□□□ -0.91
USP28-207ENST00000538475 ANKK1Q8NFD2 765 aa9.36□□□□□ -0.91
USP28-207ENST00000538475 NPDC1Q9NQX5 325 aaPredicted RBP9.36□□□□□ -0.91
USP28-207ENST00000538475 ERICH3Q5RHP9 1530 aa9.36□□□□□ -0.91
USP28-207ENST00000538475 NBPF26B4DH59 902 aa9.35□□□□□ -0.91
USP28-207ENST00000538475 FAM98CQ17RN3 349 aaKnown RBP9.35□□□□□ -0.91
USP28-207ENST00000538475 RBM26Q5T8P6 1007 aaKnown RBP9.35□□□□□ -0.91
USP28-207ENST00000538475 RBM27Q9P2N5 1060 aaKnown RBP9.35□□□□□ -0.91
USP28-207ENST00000538475 PNMA3Q9UL41 463 aa9.35□□□□□ -0.91
USP28-207ENST00000538475 PTGDRQ13258 359 aa9.34□□□□□ -0.91
USP28-207ENST00000538475 PADI6Q6TGC4 694 aa9.34□□□□□ -0.91
USP28-207ENST00000538475 ZFRQ96KR1 1074 aaKnown RBP9.34□□□□□ -0.91
USP28-207ENST00000538475 SYNJ1O43426 1573 aa9.33□□□□□ -0.92
USP28-207ENST00000538475 SMAPO00193 183 aa9.33□□□□□ -0.92
USP28-207ENST00000538475 FCHSD2O94868 740 aa9.33□□□□□ -0.92
USP28-207ENST00000538475 THSD4Q6ZMP0 1018 aa9.33□□□□□ -0.92
USP28-207ENST00000538475 TATDN2Q93075 761 aa9.33□□□□□ -0.92
USP28-207ENST00000538475 FAM198AQ9UFP1 575 aa9.33□□□□□ -0.92
USP28-207ENST00000538475 NUDT18Q6ZVK8 323 aa9.32□□□□□ -0.92
USP28-207ENST00000538475 CDK11AQ9UQ88 783 aaPredicted RBP9.32□□□□□ -0.92
USP28-207ENST00000538475 MAP3K1Q13233 1512 aa9.31□□□□□ -0.92
USP28-207ENST00000538475 PEG3Q9GZU2 1588 aa9.3□□□□□ -0.92
USP28-207ENST00000538475 HDGFP51858 240 aaKnown RBP9.3□□□□□ -0.92
USP28-207ENST00000538475 BCAMP50895 628 aa9.29□□□□□ -0.92
USP28-207ENST00000538475 LRCH3Q96II8 777 aa9.29□□□□□ -0.92
USP28-207ENST00000538475 RUSC2Q8N2Y8 1516 aa9.28□□□□□ -0.92
USP28-207ENST00000538475 SOWAHBA6NEL2 793 aa9.28□□□□□ -0.92
USP28-207ENST00000538475 TTC13Q8NBP0 860 aa9.28□□□□□ -0.92
USP28-207ENST00000538475 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.28□□□□□ -0.92
USP28-207ENST00000538475 C3orf80F5H4A9 247 aa9.27□□□□□ -0.93
USP28-207ENST00000538475 HIC1Q14526 733 aa9.27□□□□□ -0.93
USP28-207ENST00000538475 GPIHBP1Q8IV16 184 aa9.27□□□□□ -0.93
USP28-207ENST00000538475 PLA2G2EQ9NZK7 142 aa9.27□□□□□ -0.93
USP28-207ENST00000538475 SAMD7Q7Z3H4 446 aa9.25□□□□□ -0.93
USP28-207ENST00000538475 BIVM-ERCC5R4GMW8 1640 aa9.24□□□□□ -0.93
USP28-207ENST00000538475 RNF40O75150 1001 aa9.24□□□□□ -0.93
USP28-207ENST00000538475 DEKP35659 375 aaKnown RBP9.24□□□□□ -0.93
USP28-207ENST00000538475 RBM46Q8TBY0 533 aaKnown RBP9.24□□□□□ -0.93
USP28-207ENST00000538475 HPS5Q9UPZ3 1129 aa9.24□□□□□ -0.93
USP28-207ENST00000538475 MAPKBP1O60336 1514 aa9.23□□□□□ -0.93
USP28-207ENST00000538475 GNPATO15228 680 aa9.23□□□□□ -0.93
USP28-207ENST00000538475 PPP1R15AO75807 674 aaPredicted RBP9.23□□□□□ -0.93
USP28-207ENST00000538475 TSR3Q9UJK0 312 aaKnown RBP9.23□□□□□ -0.93
USP28-207ENST00000538475 ANP32CO43423 234 aa9.22□□□□□ -0.93
USP28-207ENST00000538475 SLC24A1O60721 1099 aa9.22□□□□□ -0.93
USP28-207ENST00000538475 SLC4A3P48751 1232 aa9.22□□□□□ -0.93
USP28-207ENST00000538475 PPP4CP60510 307 aa9.22□□□□□ -0.93
USP28-207ENST00000538475 FAM161AQ3B820 660 aa9.22□□□□□ -0.93
USP28-207ENST00000538475 EYA1Q99502 592 aa9.22□□□□□ -0.93
USP28-207ENST00000538475 PPP4R2Q9NY27 417 aa9.22□□□□□ -0.93
USP28-207ENST00000538475 ADGRG1Q9Y653 693 aa9.22□□□□□ -0.93
USP28-207ENST00000538475 CCNB3Q8WWL7 1395 aa9.22□□□□□ -0.93
USP28-207ENST00000538475 TOP2BQ02880 1626 aa9.21□□□□□ -0.93
USP28-207ENST00000538475 WBP1LQ9NX94 342 aa9.21□□□□□ -0.94
USP28-207ENST00000538475 OATP04181 439 aa9.2□□□□□ -0.94
USP28-207ENST00000538475 NYAP1Q6ZVC0 841 aa9.2□□□□□ -0.94
USP28-207ENST00000538475 DNAJB2P25686 324 aa9.19□□□□□ -0.94
USP28-207ENST00000538475 SWT1Q5T5J6 900 aaKnown RBP9.19□□□□□ -0.94
USP28-207ENST00000538475 BCANQ96GW7 911 aa9.19□□□□□ -0.94
USP28-207ENST00000538475 ARAP1Q96P48 1450 aa9.19□□□□□ -0.94
USP28-207ENST00000538475 WDR97A6NE52 1622 aa9.19□□□□□ -0.94
USP28-207ENST00000538475 UNC13AQ9UPW8 1703 aa9.19□□□□□ -0.94
USP28-207ENST00000538475 GPR37O15354 613 aa9.18□□□□□ -0.94
USP28-207ENST00000538475 FECHP22830 423 aa9.18□□□□□ -0.94
USP28-207ENST00000538475 SLF2Q8IX21 1173 aa9.18□□□□□ -0.94
USP28-207ENST00000538475 PRXQ9BXM0 1461 aa9.18□□□□□ -0.94
USP28-207ENST00000538475 SETD5Q9C0A6 1442 aa9.18□□□□□ -0.94
USP28-207ENST00000538475 RAPGEF2Q9Y4G8 1499 aa9.18□□□□□ -0.94
USP28-207ENST00000538475 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP28-207ENST00000538475 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP28-207ENST00000538475 NECTIN2Q92692 538 aa9.17□□□□□ -0.94
USP28-207ENST00000538475 POLR1AO95602 1720 aaPredicted RBP9.17□□□□□ -0.94
USP28-207ENST00000538475 RCCD1A6NED2 376 aa9.16□□□□□ -0.94
USP28-207ENST00000538475 LMOD2Q6P5Q4 547 aa9.16□□□□□ -0.94
USP28-207ENST00000538475 USP35Q9P2H5 1018 aa9.16□□□□□ -0.94
USP28-207ENST00000538475 NOP58Q9Y2X3 529 aaKnown RBP9.15□□□□□ -0.94
USP28-207ENST00000538475 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.14□□□□□ -0.95
USP28-207ENST00000538475 PXYLP1Q8TE99 480 aa9.14□□□□□ -0.95
USP28-207ENST00000538475 TMEM134Q9H6X4 195 aa9.14□□□□□ -0.95
USP28-207ENST00000538475 CFAP43Q8NDM7 1665 aa9.13□□□□□ -0.95
USP28-207ENST00000538475 RAB3GAP2Q9H2M9 1393 aa9.13□□□□□ -0.95
USP28-207ENST00000538475 TIAM1Q13009 1591 aa9.13□□□□□ -0.95
USP28-207ENST00000538475 METTL3Q86U44 580 aaKnown RBP9.13□□□□□ -0.95
USP28-207ENST00000538475 UBE2Q2Q8WVN8 375 aa9.13□□□□□ -0.95
USP28-207ENST00000538475 C11orf95C9JLR9 678 aaPredicted RBP9.12□□□□□ -0.95
USP28-207ENST00000538475 DDX10Q13206 875 aaKnown RBP9.12□□□□□ -0.95
USP28-207ENST00000538475 RTL5Q5HYW3 569 aaPredicted RBP9.12□□□□□ -0.95
USP28-207ENST00000538475 FHAD1B1AJZ9 1412 aa9.11□□□□□ -0.95
USP28-207ENST00000538475 MAP2K5Q13163 448 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms