RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 SMG6Q86US8 1419 aaKnown RBP19■□□□□ 0.63
LIMK1-208ENST00000538333 ADGRB3O60242 1522 aa19■□□□□ 0.63
LIMK1-208ENST00000538333 NLRP13Q86W25 1043 aa18.99■□□□□ 0.63
LIMK1-208ENST00000538333 PANK3Q9H999 370 aa18.99■□□□□ 0.63
LIMK1-208ENST00000538333 NPATQ14207 1427 aa18.99■□□□□ 0.63
LIMK1-208ENST00000538333 NRXN1Q9ULB1 1477 aa18.99■□□□□ 0.63
LIMK1-208ENST00000538333 RICTORQ6R327 1708 aa18.98■□□□□ 0.63
LIMK1-208ENST00000538333 ERICH6BQ5W0A0 696 aa18.98■□□□□ 0.63
LIMK1-208ENST00000538333 SYNMO15061 1565 aa18.97■□□□□ 0.63
LIMK1-208ENST00000538333 ABCC3O15438 1527 aa18.97■□□□□ 0.63
LIMK1-208ENST00000538333 IRX6P78412 446 aaPredicted RBP18.96■□□□□ 0.63
LIMK1-208ENST00000538333 DIP2CQ9Y2E4 1556 aa18.96■□□□□ 0.63
LIMK1-208ENST00000538333 MYOM1P52179 1685 aa18.96■□□□□ 0.62
LIMK1-208ENST00000538333 CFAP65Q6ZU64 1925 aaKnown RBP18.96■□□□□ 0.62
LIMK1-208ENST00000538333 ADGRF5Q8IZF2 1346 aa18.95■□□□□ 0.62
LIMK1-208ENST00000538333 EIF3AQ14152 1382 aaKnown RBP18.95■□□□□ 0.62
LIMK1-208ENST00000538333 CAMSAP1Q5T5Y3 1602 aa18.94■□□□□ 0.62
LIMK1-208ENST00000538333 PPLO60437 1756 aa18.94■□□□□ 0.62
LIMK1-208ENST00000538333 RAPGEF3O95398 923 aa18.93■□□□□ 0.62
LIMK1-208ENST00000538333 NUDCQ9Y266 331 aa18.93■□□□□ 0.62
LIMK1-208ENST00000538333 CFAP70Q5T0N1 1121 aa18.92■□□□□ 0.62
LIMK1-208ENST00000538333 GGT6Q6P531 493 aa18.92■□□□□ 0.62
LIMK1-208ENST00000538333 SIGLEC1Q9BZZ2 1709 aa18.92■□□□□ 0.62
LIMK1-208ENST00000538333 GLI2P10070 1586 aa18.92■□□□□ 0.62
LIMK1-208ENST00000538333 CC2D1BQ5T0F9 858 aaKnown RBP18.92■□□□□ 0.62
LIMK1-208ENST00000538333 MYO3AQ8NEV4 1616 aa18.91■□□□□ 0.62
LIMK1-208ENST00000538333 CDCA8Q53HL2 280 aa18.91■□□□□ 0.62
LIMK1-208ENST00000538333 KDM5AP29375 1690 aaKnown RBP18.91■□□□□ 0.62
LIMK1-208ENST00000538333 SETBP1Q9Y6X0 1596 aa18.9■□□□□ 0.62
LIMK1-208ENST00000538333 NOS1P29475 1434 aa18.9■□□□□ 0.62
LIMK1-208ENST00000538333 ZMYM4Q5VZL5 1548 aa18.89■□□□□ 0.62
LIMK1-208ENST00000538333 PIK3C2BO00750 1634 aa18.89■□□□□ 0.61
LIMK1-208ENST00000538333 INSRP06213 1382 aa18.88■□□□□ 0.61
LIMK1-208ENST00000538333 RNF123Q5XPI4 1314 aa18.88■□□□□ 0.61
LIMK1-208ENST00000538333 PIK3C2GO75747 1445 aa18.87■□□□□ 0.61
LIMK1-208ENST00000538333 ZC3H13Q5T200 1668 aaKnown RBP18.87■□□□□ 0.61
LIMK1-208ENST00000538333 ERVK-7P63135 1459 aa18.87■□□□□ 0.61
LIMK1-208ENST00000538333 PPP4R2Q9NY27 417 aa18.86■□□□□ 0.61
LIMK1-208ENST00000538333 AMER1Q5JTC6 1135 aaPredicted RBP18.86■□□□□ 0.61
LIMK1-208ENST00000538333 SENP3-EIF4A1A0A087X0R7 540 aa18.85■□□□□ 0.61
LIMK1-208ENST00000538333 SBNO2Q9Y2G9 1366 aa18.85■□□□□ 0.61
LIMK1-208ENST00000538333 BLMP54132 1417 aaPredicted RBP18.85■□□□□ 0.61
LIMK1-208ENST00000538333 ARHGAP31Q2M1Z3 1444 aa18.85■□□□□ 0.61
LIMK1-208ENST00000538333 YEATS2Q9ULM3 1422 aa18.85■□□□□ 0.61
LIMK1-208ENST00000538333 ASXL1Q8IXJ9 1541 aa18.84■□□□□ 0.61
LIMK1-208ENST00000538333 SLC24A1O60721 1099 aa18.84■□□□□ 0.61
LIMK1-208ENST00000538333 KNSTRNQ9Y448 316 aa18.84■□□□□ 0.61
LIMK1-208ENST00000538333 ADGRB1O14514 1584 aa18.83■□□□□ 0.61
LIMK1-208ENST00000538333 NPC1L1Q9UHC9 1359 aa18.83■□□□□ 0.6
LIMK1-208ENST00000538333 RPGRIP1LQ68CZ1 1315 aa18.82■□□□□ 0.6
LIMK1-208ENST00000538333 CHGAP10645 457 aaKnown RBP18.82■□□□□ 0.6
LIMK1-208ENST00000538333 DIP2BQ9P265 1576 aa18.81■□□□□ 0.6
LIMK1-208ENST00000538333 C14orf93Q9H972 538 aaKnown RBP18.81■□□□□ 0.6
LIMK1-208ENST00000538333 NEXMIFQ5QGS0 1516 aa18.79■□□□□ 0.6
LIMK1-208ENST00000538333 PPP2R1AP30153 589 aa18.78■□□□□ 0.6
LIMK1-208ENST00000538333 QRICH2Q9H0J4 1663 aa18.78■□□□□ 0.6
LIMK1-208ENST00000538333 PDE3BQ13370 1112 aa18.76■□□□□ 0.59
LIMK1-208ENST00000538333 CENPJQ9HC77 1338 aaPredicted RBP18.76■□□□□ 0.59
LIMK1-208ENST00000538333 PREX1Q8TCU6 1659 aa18.75■□□□□ 0.59
LIMK1-208ENST00000538333 MYO5BQ9ULV0 1848 aa18.73■□□□□ 0.59
LIMK1-208ENST00000538333 B4GALNT3Q6L9W6 998 aa18.72■□□□□ 0.59
LIMK1-208ENST00000538333 ARHGEF28Q8N1W1 1705 aaKnown RBP18.72■□□□□ 0.59
LIMK1-208ENST00000538333 FAM69CQ0P6D2 419 aa18.72■□□□□ 0.59
LIMK1-208ENST00000538333 TRAK1Q9UPV9 953 aa18.72■□□□□ 0.59
LIMK1-208ENST00000538333 SALL2Q9Y467 1007 aaPredicted RBP18.72■□□□□ 0.59
LIMK1-208ENST00000538333 TSPOAP1O95153 1857 aa18.72■□□□□ 0.59
LIMK1-208ENST00000538333 IDI1Q13907 227 aa18.71■□□□□ 0.59
LIMK1-208ENST00000538333 CARD14Q9BXL6 1004 aa18.71■□□□□ 0.59
LIMK1-208ENST00000538333 ADAMTS8Q9UP79 889 aa18.71■□□□□ 0.59
LIMK1-208ENST00000538333 RBM19Q9Y4C8 960 aaKnown RBP18.71■□□□□ 0.59
LIMK1-208ENST00000538333 ZFYVE9O95405 1425 aa18.71■□□□□ 0.59
LIMK1-208ENST00000538333 REREQ9P2R6 1566 aa18.71■□□□□ 0.59
LIMK1-208ENST00000538333 TMEM131LA2VDJ0 1609 aa18.71■□□□□ 0.59
LIMK1-208ENST00000538333 VGFO15240 615 aaPredicted RBP18.7■□□□□ 0.58
LIMK1-208ENST00000538333 TMEM132EQ6IEE7 984 aa18.7■□□□□ 0.58
LIMK1-208ENST00000538333 SLC52A1Q9NWF4 448 aa18.7■□□□□ 0.58
LIMK1-208ENST00000538333 CDCA7LQ96GN5 454 aa18.68■□□□□ 0.58
LIMK1-208ENST00000538333 RCAN3Q9UKA8 241 aa18.66■□□□□ 0.58
LIMK1-208ENST00000538333 AGLP35573 1532 aa18.66■□□□□ 0.58
LIMK1-208ENST00000538333 RRP1P56182 461 aaKnown RBP18.66■□□□□ 0.58
LIMK1-208ENST00000538333 KIF13AQ9H1H9 1805 aa18.65■□□□□ 0.58
LIMK1-208ENST00000538333 NUTM2DQ5VT03 806 aaPredicted RBP18.65■□□□□ 0.58
LIMK1-208ENST00000538333 TRHP20396 242 aaPredicted RBP18.65■□□□□ 0.58
LIMK1-208ENST00000538333 WDR43Q15061 677 aaKnown RBP eCLIP18.65■□□□□ 0.58
LIMK1-208ENST00000538333 USP32Q8NFA0 1604 aa18.64■□□□□ 0.57
LIMK1-208ENST00000538333 TULP4Q9NRJ4 1543 aa18.64■□□□□ 0.57
LIMK1-208ENST00000538333 PLEKHH1Q9ULM0 1364 aa18.62■□□□□ 0.57
LIMK1-208ENST00000538333 NSD3Q9BZ95 1437 aa18.62■□□□□ 0.57
LIMK1-208ENST00000538333 PUS7Q96PZ0 661 aaKnown RBP18.62■□□□□ 0.57
LIMK1-208ENST00000538333 ZNF521Q96K83 1311 aa18.61■□□□□ 0.57
LIMK1-208ENST00000538333 SLC12A5Q9H2X9 1139 aa18.61■□□□□ 0.57
LIMK1-208ENST00000538333 CLTCQ00610 1675 aaKnown RBP18.59■□□□□ 0.57
LIMK1-208ENST00000538333 FBXO31Q5XUX0 539 aaPredicted RBP18.59■□□□□ 0.57
LIMK1-208ENST00000538333 PPP6R1Q9UPN7 881 aa18.59■□□□□ 0.57
LIMK1-208ENST00000538333 CCDC136Q96JN2 1154 aa18.58■□□□□ 0.56
LIMK1-208ENST00000538333 EVC2Q86UK5 1308 aa18.58■□□□□ 0.56
LIMK1-208ENST00000538333 POLR3AO14802 1390 aaPredicted RBP18.57■□□□□ 0.56
LIMK1-208ENST00000538333 PTPRMP28827 1452 aa18.56■□□□□ 0.56
LIMK1-208ENST00000538333 SPATA31D1Q6ZQQ2 1576 aa18.56■□□□□ 0.56
LIMK1-208ENST00000538333 SHPRHQ149N8 1683 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms