RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ABCC3O15438 1527 aa9.03□□□□□ -0.96
USP28-206ENST00000538224 MYOM1P52179 1685 aa9.03□□□□□ -0.96
USP28-206ENST00000538224 MYBBP1AQ9BQG0 1328 aaKnown RBP9.03□□□□□ -0.96
USP28-206ENST00000538224 NRXN1Q9ULB1 1477 aa9.02□□□□□ -0.96
USP28-206ENST00000538224 RIMBP3CA6NJZ7 1639 aa9.02□□□□□ -0.96
USP28-206ENST00000538224 RIMBP3BA6NNM3 1639 aa9.02□□□□□ -0.96
USP28-206ENST00000538224 RIMBP3Q9UFD9 1639 aa9.02□□□□□ -0.96
USP28-206ENST00000538224 REREQ9P2R6 1566 aa9.02□□□□□ -0.97
USP28-206ENST00000538224 INSRP06213 1382 aa9.01□□□□□ -0.97
USP28-206ENST00000538224 DIP2BQ9P265 1576 aa9.01□□□□□ -0.97
USP28-206ENST00000538224 PARD3Q8TEW0 1356 aa9□□□□□ -0.97
USP28-206ENST00000538224 FKBP8Q14318 412 aa9□□□□□ -0.97
USP28-206ENST00000538224 UGGT1Q9NYU2 1555 aa8.99□□□□□ -0.97
USP28-206ENST00000538224 ARHGAP31Q2M1Z3 1444 aa8.99□□□□□ -0.97
USP28-206ENST00000538224 NBPF1Q3BBV0 1214 aa8.99□□□□□ -0.97
USP28-206ENST00000538224 FAM9BQ8IZU0 186 aa8.99□□□□□ -0.97
USP28-206ENST00000538224 TESK2Q96S53 571 aa8.99□□□□□ -0.97
USP28-206ENST00000538224 LRPPRCP42704 1394 aaKnown RBP8.99□□□□□ -0.97
USP28-206ENST00000538224 DISP3Q9P2K9 1392 aa8.99□□□□□ -0.97
USP28-206ENST00000538224 NPATQ14207 1427 aa8.98□□□□□ -0.97
USP28-206ENST00000538224 PREX1Q8TCU6 1659 aa8.98□□□□□ -0.97
USP28-206ENST00000538224 QRICH2Q9H0J4 1663 aa8.98□□□□□ -0.97
USP28-206ENST00000538224 SIGLEC1Q9BZZ2 1709 aa8.98□□□□□ -0.97
USP28-206ENST00000538224 NLRP13Q86W25 1043 aa8.98□□□□□ -0.97
USP28-206ENST00000538224 TMC1Q8TDI8 760 aa8.98□□□□□ -0.97
USP28-206ENST00000538224 SBNO2Q9Y2G9 1366 aa8.98□□□□□ -0.97
USP28-206ENST00000538224 SMG6Q86US8 1419 aaKnown RBP8.97□□□□□ -0.97
USP28-206ENST00000538224 CCDC184Q52MB2 194 aa8.97□□□□□ -0.97
USP28-206ENST00000538224 RPGRIP1LQ68CZ1 1315 aa8.97□□□□□ -0.97
USP28-206ENST00000538224 NOS1P29475 1434 aa8.97□□□□□ -0.97
USP28-206ENST00000538224 ASXL1Q8IXJ9 1541 aa8.96□□□□□ -0.97
USP28-206ENST00000538224 CFAP65Q6ZU64 1925 aaKnown RBP8.96□□□□□ -0.97
USP28-206ENST00000538224 NPC1L1Q9UHC9 1359 aa8.96□□□□□ -0.98
USP28-206ENST00000538224 PIK3C2GO75747 1445 aa8.96□□□□□ -0.98
USP28-206ENST00000538224 USP32Q8NFA0 1604 aa8.95□□□□□ -0.98
USP28-206ENST00000538224 AGLP35573 1532 aa8.95□□□□□ -0.98
USP28-206ENST00000538224 NEXMIFQ5QGS0 1516 aa8.95□□□□□ -0.98
USP28-206ENST00000538224 ARHGEF28Q8N1W1 1705 aaKnown RBP8.94□□□□□ -0.98
USP28-206ENST00000538224 PNISRQ8TF01 805 aaKnown RBP8.94□□□□□ -0.98
USP28-206ENST00000538224 BLMP54132 1417 aaPredicted RBP8.93□□□□□ -0.98
USP28-206ENST00000538224 ADGRB1O14514 1584 aa8.93□□□□□ -0.98
USP28-206ENST00000538224 TSPOAP1O95153 1857 aa8.93□□□□□ -0.98
USP28-206ENST00000538224 MYO5BQ9ULV0 1848 aa8.92□□□□□ -0.98
USP28-206ENST00000538224 ARHGEF40Q8TER5 1519 aa8.92□□□□□ -0.98
USP28-206ENST00000538224 ERVK-7P63135 1459 aa8.92□□□□□ -0.98
USP28-206ENST00000538224 ZFYVE9O95405 1425 aa8.92□□□□□ -0.98
USP28-206ENST00000538224 PER1O15534 1290 aaPredicted RBP8.92□□□□□ -0.98
USP28-206ENST00000538224 NUDCQ9Y266 331 aa8.92□□□□□ -0.98
USP28-206ENST00000538224 KIF13AQ9H1H9 1805 aa8.91□□□□□ -0.98
USP28-206ENST00000538224 TMEM131LA2VDJ0 1609 aa8.91□□□□□ -0.98
USP28-206ENST00000538224 PDE3BQ13370 1112 aa8.91□□□□□ -0.98
USP28-206ENST00000538224 PANK3Q9H999 370 aa8.91□□□□□ -0.98
USP28-206ENST00000538224 GGT6Q6P531 493 aa8.9□□□□□ -0.98
USP28-206ENST00000538224 PPP6R1Q9UPN7 881 aa8.9□□□□□ -0.98
USP28-206ENST00000538224 KNSTRNQ9Y448 316 aa8.9□□□□□ -0.98
USP28-206ENST00000538224 ADGRF5Q8IZF2 1346 aa8.89□□□□□ -0.99
USP28-206ENST00000538224 CLTCQ00610 1675 aaKnown RBP8.89□□□□□ -0.99
USP28-206ENST00000538224 BCANQ96GW7 911 aa8.89□□□□□ -0.99
USP28-206ENST00000538224 SLC52A1Q9NWF4 448 aa8.89□□□□□ -0.99
USP28-206ENST00000538224 PPP4R2Q9NY27 417 aa8.89□□□□□ -0.99
USP28-206ENST00000538224 YEATS2Q9ULM3 1422 aa8.88□□□□□ -0.99
USP28-206ENST00000538224 CENPJQ9HC77 1338 aaPredicted RBP8.88□□□□□ -0.99
USP28-206ENST00000538224 VGFO15240 615 aaPredicted RBP8.88□□□□□ -0.99
USP28-206ENST00000538224 RAPGEF3O95398 923 aa8.88□□□□□ -0.99
USP28-206ENST00000538224 SPATA31D1Q6ZQQ2 1576 aa8.87□□□□□ -0.99
USP28-206ENST00000538224 RNF123Q5XPI4 1314 aa8.87□□□□□ -0.99
USP28-206ENST00000538224 CHGAP10645 457 aaKnown RBP8.87□□□□□ -0.99
USP28-206ENST00000538224 CFAP70Q5T0N1 1121 aa8.87□□□□□ -0.99
USP28-206ENST00000538224 PUS7Q96PZ0 661 aaKnown RBP8.87□□□□□ -0.99
USP28-206ENST00000538224 C14orf93Q9H972 538 aaKnown RBP8.87□□□□□ -0.99
USP28-206ENST00000538224 ANKRD26Q9UPS8 1709 aa8.87□□□□□ -0.99
USP28-206ENST00000538224 NINLQ9Y2I6 1382 aa8.86□□□□□ -0.99
USP28-206ENST00000538224 CNGB1Q14028 1251 aaPredicted RBP8.86□□□□□ -0.99
USP28-206ENST00000538224 CC2D1BQ5T0F9 858 aaKnown RBP8.86□□□□□ -0.99
USP28-206ENST00000538224 CYB5RLQ6IPT4 315 aa8.86□□□□□ -0.99
USP28-206ENST00000538224 FAM69CQ0P6D2 419 aa8.85□□□□□ -0.99
USP28-206ENST00000538224 AMER1Q5JTC6 1135 aaPredicted RBP8.85□□□□□ -0.99
USP28-206ENST00000538224 WDR43Q15061 677 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP28-206ENST00000538224 TSHZ2Q9NRE2 1034 aa8.84□□□□□ -0.99
USP28-206ENST00000538224 NSD2O96028 1365 aa8.84□□□□□ -0.99
USP28-206ENST00000538224 KNDC1Q76NI1 1749 aa8.83□□□□□ -1
USP28-206ENST00000538224 PPP2R1AP30153 589 aa8.83□□□□□ -1
USP28-206ENST00000538224 NGEFQ8N5V2 710 aa8.83□□□□□ -1
USP28-206ENST00000538224 TULP4Q9NRJ4 1543 aa8.83□□□□□ -1
USP28-206ENST00000538224 SETD1AO15047 1707 aaKnown RBP8.83□□□□□ -1
USP28-206ENST00000538224 DLC1Q96QB1 1528 aa8.82□□□□□ -1
USP28-206ENST00000538224 KIF20BQ96Q89 1820 aa8.82□□□□□ -1
USP28-206ENST00000538224 SHPRHQ149N8 1683 aa8.81□□□□□ -1
USP28-206ENST00000538224 EVC2Q86UK5 1308 aa8.81□□□□□ -1
USP28-206ENST00000538224 ALKQ9UM73 1620 aa8.81□□□□□ -1
USP28-206ENST00000538224 NSD3Q9BZ95 1437 aa8.8□□□□□ -1
USP28-206ENST00000538224 POLR3AO14802 1390 aaPredicted RBP8.8□□□□□ -1
USP28-206ENST00000538224 ANKRD36BQ8N2N9 1353 aa8.8□□□□□ -1
USP28-206ENST00000538224 PTPRMP28827 1452 aa8.8□□□□□ -1
USP28-206ENST00000538224 ATAD2Q6PL18 1390 aa8.79□□□□□ -1
USP28-206ENST00000538224 IRX6P78412 446 aaPredicted RBP8.79□□□□□ -1
USP28-206ENST00000538224 IDI1Q13907 227 aa8.79□□□□□ -1
USP28-206ENST00000538224 TRAK1Q9UPV9 953 aa8.79□□□□□ -1
USP28-206ENST00000538224 YTHDC2Q9H6S0 1430 aaKnown RBP8.79□□□□□ -1
USP28-206ENST00000538224 CGNL1Q0VF96 1302 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms