RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 ZNF326Q5BKZ1 582 aaKnown RBP17.67■□□□□ 0.42
CHD4-203ENST00000535717 SPATA31E1Q6ZUB1 1445 aa17.66■□□□□ 0.42
CHD4-203ENST00000535717 DMRT2Q9Y5R5 561 aa17.66■□□□□ 0.42
CHD4-203ENST00000535717 MED14O60244 1454 aa17.66■□□□□ 0.42
CHD4-203ENST00000535717 NPHP4O75161 1426 aaPredicted RBP17.64■□□□□ 0.42
CHD4-203ENST00000535717 HDGFP51858 240 aaKnown RBP17.64■□□□□ 0.41
CHD4-203ENST00000535717 NUTM2DQ5VT03 806 aaPredicted RBP17.64■□□□□ 0.41
CHD4-203ENST00000535717 RGL3Q3MIN7 710 aa17.63■□□□□ 0.41
CHD4-203ENST00000535717 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.63■□□□□ 0.41
CHD4-203ENST00000535717 NEXMIFQ5QGS0 1516 aa17.62■□□□□ 0.41
CHD4-203ENST00000535717 IQGAP1P46940 1657 aa17.61■□□□□ 0.41
CHD4-203ENST00000535717 PPP1R15AO75807 674 aaPredicted RBP17.61■□□□□ 0.41
CHD4-203ENST00000535717 RPGRIP1LQ68CZ1 1315 aa17.61■□□□□ 0.41
CHD4-203ENST00000535717 PLEKHG1Q9ULL1 1385 aa17.59■□□□□ 0.41
CHD4-203ENST00000535717 SENP3Q9H4L4 574 aaPredicted RBP17.59■□□□□ 0.41
CHD4-203ENST00000535717 SIN3AQ96ST3 1273 aa17.58■□□□□ 0.4
CHD4-203ENST00000535717 PPLO60437 1756 aa17.58■□□□□ 0.4
CHD4-203ENST00000535717 VGFO15240 615 aaPredicted RBP17.56■□□□□ 0.4
CHD4-203ENST00000535717 BCANQ96GW7 911 aa17.56■□□□□ 0.4
CHD4-203ENST00000535717 SLC26A8Q96RN1 970 aa17.56■□□□□ 0.4
CHD4-203ENST00000535717 IFT172Q9UG01 1749 aa17.55■□□□□ 0.4
CHD4-203ENST00000535717 ADGRF5Q8IZF2 1346 aa17.53■□□□□ 0.4
CHD4-203ENST00000535717 NEUROD1Q13562 356 aa17.53■□□□□ 0.4
CHD4-203ENST00000535717 ADAMTS13Q76LX8 1427 aa17.53■□□□□ 0.4
CHD4-203ENST00000535717 SETBP1Q9Y6X0 1596 aa17.53■□□□□ 0.4
CHD4-203ENST00000535717 ZNF335Q9H4Z2 1342 aaPredicted RBP17.52■□□□□ 0.4
CHD4-203ENST00000535717 NRXN3Q9Y4C0 1643 aa17.52■□□□□ 0.4
CHD4-203ENST00000535717 TBX22Q9Y458 520 aa17.51■□□□□ 0.39
CHD4-203ENST00000535717 DCAF11Q8TEB1 546 aa17.5■□□□□ 0.39
CHD4-203ENST00000535717 MYOM2P54296 1465 aa17.5■□□□□ 0.39
CHD4-203ENST00000535717 DIP2AQ14689 1571 aa17.49■□□□□ 0.39
CHD4-203ENST00000535717 KDM2AQ9Y2K7 1162 aa17.48■□□□□ 0.39
CHD4-203ENST00000535717 NRXN1Q9ULB1 1477 aa17.48■□□□□ 0.39
CHD4-203ENST00000535717 LTBP4Q8N2S1 1624 aa17.47■□□□□ 0.39
CHD4-203ENST00000535717 CCER1Q8TC90 406 aaPredicted RBP17.47■□□□□ 0.39
CHD4-203ENST00000535717 PIK3C2GO75747 1445 aa17.47■□□□□ 0.39
CHD4-203ENST00000535717 L3MBTL2Q969R5 705 aa17.46■□□□□ 0.39
CHD4-203ENST00000535717 STAC3Q96MF2 364 aa17.46■□□□□ 0.39
CHD4-203ENST00000535717 ALKQ9UM73 1620 aa17.46■□□□□ 0.39
CHD4-203ENST00000535717 CLSPNQ9HAW4 1339 aa17.46■□□□□ 0.38
CHD4-203ENST00000535717 STRCP1A6NGW2 1772 aa17.45■□□□□ 0.38
CHD4-203ENST00000535717 METP08581 1390 aa17.45■□□□□ 0.38
CHD4-203ENST00000535717 KCNA6P17658 529 aa17.44■□□□□ 0.38
CHD4-203ENST00000535717 SETD1AO15047 1707 aaKnown RBP17.44■□□□□ 0.38
CHD4-203ENST00000535717 PIK3R4Q99570 1358 aa17.43■□□□□ 0.38
CHD4-203ENST00000535717 CHD2O14647 1828 aaKnown RBP17.42■□□□□ 0.38
CHD4-203ENST00000535717 PTPRUQ92729 1446 aa17.42■□□□□ 0.38
CHD4-203ENST00000535717 C14orf93Q9H972 538 aaKnown RBP17.42■□□□□ 0.38
CHD4-203ENST00000535717 NWD1Q149M9 1564 aa17.41■□□□□ 0.38
CHD4-203ENST00000535717 CFAP70Q5T0N1 1121 aa17.41■□□□□ 0.38
CHD4-203ENST00000535717 CPS1P31327 1500 aa17.41■□□□□ 0.38
CHD4-203ENST00000535717 TONSLQ96HA7 1378 aa17.4■□□□□ 0.38
CHD4-203ENST00000535717 CERKQ8TCT0 537 aa17.39■□□□□ 0.37
CHD4-203ENST00000535717 AMOTL2Q9Y2J4 779 aa17.39■□□□□ 0.37
CHD4-203ENST00000535717 TMEM132EQ6IEE7 984 aa17.38■□□□□ 0.37
CHD4-203ENST00000535717 PRAG1Q86YV5 1406 aa17.38■□□□□ 0.37
CHD4-203ENST00000535717 NKTRP30414 1462 aaKnown RBP17.37■□□□□ 0.37
CHD4-203ENST00000535717 ASXL1Q8IXJ9 1541 aa17.37■□□□□ 0.37
CHD4-203ENST00000535717 LRRC7Q96NW7 1537 aa17.37■□□□□ 0.37
CHD4-203ENST00000535717 LAMC1P11047 1609 aa17.37■□□□□ 0.37
CHD4-203ENST00000535717 XRN1Q8IZH2 1706 aaKnown RBP17.37■□□□□ 0.37
CHD4-203ENST00000535717 PROSER2Q86WR7 435 aaPredicted RBP17.35■□□□□ 0.37
CHD4-203ENST00000535717 RBM33Q96EV2 1170 aaKnown RBP17.34■□□□□ 0.37
CHD4-203ENST00000535717 ADGRB1O14514 1584 aa17.33■□□□□ 0.37
CHD4-203ENST00000535717 LRPPRCP42704 1394 aaKnown RBP17.33■□□□□ 0.36
CHD4-203ENST00000535717 TMEM94Q12767 1356 aa17.33■□□□□ 0.36
CHD4-203ENST00000535717 STK26Q9P289 416 aa17.33■□□□□ 0.36
CHD4-203ENST00000535717 YTHDC2Q9H6S0 1430 aaKnown RBP17.32■□□□□ 0.36
CHD4-203ENST00000535717 NBPF8Q3BBV2 869 aa17.32■□□□□ 0.36
CHD4-203ENST00000535717 XIRP1Q702N8 1843 aaKnown RBP17.32■□□□□ 0.36
CHD4-203ENST00000535717 KIAA1210Q9ULL0 1709 aa17.32■□□□□ 0.36
CHD4-203ENST00000535717 ABCC11Q96J66 1382 aa17.31■□□□□ 0.36
CHD4-203ENST00000535717 ROBO2Q9HCK4 1378 aa17.31■□□□□ 0.36
CHD4-203ENST00000535717 TIMELESSQ9UNS1 1208 aa17.31■□□□□ 0.36
CHD4-203ENST00000535717 IQSEC2Q5JU85 1478 aa17.31■□□□□ 0.36
CHD4-203ENST00000535717 NBPF1Q3BBV0 1214 aa17.3■□□□□ 0.36
CHD4-203ENST00000535717 TECPR2O15040 1411 aa17.3■□□□□ 0.36
CHD4-203ENST00000535717 PTCH1Q13635 1447 aa17.3■□□□□ 0.36
CHD4-203ENST00000535717 TRPM1Q7Z4N2 1603 aa17.28■□□□□ 0.36
CHD4-203ENST00000535717 KNDC1Q76NI1 1749 aa17.27■□□□□ 0.36
CHD4-203ENST00000535717 NCOA3Q9Y6Q9 1424 aa17.27■□□□□ 0.35
CHD4-203ENST00000535717 WAPLQ7Z5K2 1190 aa17.25■□□□□ 0.35
CHD4-203ENST00000535717 SIRT1Q96EB6 747 aa17.25■□□□□ 0.35
CHD4-203ENST00000535717 TRAK1Q9UPV9 953 aa17.25■□□□□ 0.35
CHD4-203ENST00000535717 C14orf37Q86TY3 774 aa17.24■□□□□ 0.35
CHD4-203ENST00000535717 PLEKHH1Q9ULM0 1364 aa17.24■□□□□ 0.35
CHD4-203ENST00000535717 FAM135BQ49AJ0 1406 aa17.23■□□□□ 0.35
CHD4-203ENST00000535717 DLC1Q96QB1 1528 aa17.23■□□□□ 0.35
CHD4-203ENST00000535717 ROCK2O75116 1388 aaKnown RBP17.23■□□□□ 0.35
CHD4-203ENST00000535717 MSH6P52701 1360 aa17.23■□□□□ 0.35
CHD4-203ENST00000535717 PRAM1Q96QH2 718 aa17.22■□□□□ 0.35
CHD4-203ENST00000535717 C19orf44Q9H6X5 657 aa17.22■□□□□ 0.35
CHD4-203ENST00000535717 RALGAPBQ86X10 1494 aa17.22■□□□□ 0.35
CHD4-203ENST00000535717 ADGRL3Q9HAR2 1447 aa17.21■□□□□ 0.35
CHD4-203ENST00000535717 GPRASP1Q5JY77 1395 aa17.21■□□□□ 0.35
CHD4-203ENST00000535717 UBAP1LF5GYI3 381 aa17.21■□□□□ 0.35
CHD4-203ENST00000535717 NALCNQ8IZF0 1738 aa17.21■□□□□ 0.35
CHD4-203ENST00000535717 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.2■□□□□ 0.34
CHD4-203ENST00000535717 ARHGEF28Q8N1W1 1705 aaKnown RBP17.19■□□□□ 0.34
CHD4-203ENST00000535717 POGKQ9P215 609 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms