RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-223ENST00000533079 SLC26A8Q96RN1 970 aa19.59■□□□□ 0.73
CAPN1-223ENST00000533079 SLC52A1Q9NWF4 448 aa19.59■□□□□ 0.73
CAPN1-223ENST00000533079 CHD2O14647 1828 aaKnown RBP19.59■□□□□ 0.73
CAPN1-223ENST00000533079 FGD6Q6ZV73 1430 aa19.59■□□□□ 0.73
CAPN1-223ENST00000533079 ZFYVE9O95405 1425 aa19.58■□□□□ 0.72
CAPN1-223ENST00000533079 PLEKHG1Q9ULL1 1385 aa19.57■□□□□ 0.72
CAPN1-223ENST00000533079 ADGRL2O95490 1459 aa19.56■□□□□ 0.72
CAPN1-223ENST00000533079 SLAIN2Q9P270 581 aa19.56■□□□□ 0.72
CAPN1-223ENST00000533079 DIP2AQ14689 1571 aa19.56■□□□□ 0.72
CAPN1-223ENST00000533079 GCC2Q8IWJ2 1684 aa19.56■□□□□ 0.72
CAPN1-223ENST00000533079 SHPRHQ149N8 1683 aa19.55■□□□□ 0.72
CAPN1-223ENST00000533079 AHDC1Q5TGY3 1603 aaPredicted RBP19.54■□□□□ 0.72
CAPN1-223ENST00000533079 SPATA31A6Q5VVP1 1343 aa19.54■□□□□ 0.72
CAPN1-223ENST00000533079 TMEM131LA2VDJ0 1609 aa19.52■□□□□ 0.72
CAPN1-223ENST00000533079 LRP6O75581 1613 aa19.51■□□□□ 0.71
CAPN1-223ENST00000533079 HDGFP51858 240 aaKnown RBP19.51■□□□□ 0.71
CAPN1-223ENST00000533079 RBM33Q96EV2 1170 aaKnown RBP19.51■□□□□ 0.71
CAPN1-223ENST00000533079 BCANQ96GW7 911 aa19.5■□□□□ 0.71
CAPN1-223ENST00000533079 RIMS2Q9UQ26 1411 aa19.5■□□□□ 0.71
CAPN1-223ENST00000533079 MYO5BQ9ULV0 1848 aa19.49■□□□□ 0.71
CAPN1-223ENST00000533079 ZNF772Q68DY9 489 aaPredicted RBP19.49■□□□□ 0.71
CAPN1-223ENST00000533079 PIK3R4Q99570 1358 aa19.48■□□□□ 0.71
CAPN1-223ENST00000533079 PPP1R15AO75807 674 aaPredicted RBP19.47■□□□□ 0.71
CAPN1-223ENST00000533079 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.47■□□□□ 0.71
CAPN1-223ENST00000533079 UNC13BO14795 1591 aa19.46■□□□□ 0.71
CAPN1-223ENST00000533079 APLP2Q06481 763 aa19.46■□□□□ 0.71
CAPN1-223ENST00000533079 TBX22Q9Y458 520 aa19.46■□□□□ 0.71
CAPN1-223ENST00000533079 CDK12Q9NYV4 1490 aaPredicted RBP19.46■□□□□ 0.71
CAPN1-223ENST00000533079 ANKRD50Q9ULJ7 1429 aa19.45■□□□□ 0.7
CAPN1-223ENST00000533079 CADPS2Q86UW7 1296 aa19.45■□□□□ 0.7
CAPN1-223ENST00000533079 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.45■□□□□ 0.7
CAPN1-223ENST00000533079 TRPM2O94759 1503 aa19.45■□□□□ 0.7
CAPN1-223ENST00000533079 DCCP43146 1447 aa19.44■□□□□ 0.7
CAPN1-223ENST00000533079 MEX3CQ5U5Q3 659 aaKnown RBP19.44■□□□□ 0.7
CAPN1-223ENST00000533079 CHIC2Q9UKJ5 165 aa19.44■□□□□ 0.7
CAPN1-223ENST00000533079 ADAMTS13Q76LX8 1427 aa19.42■□□□□ 0.7
CAPN1-223ENST00000533079 UPF1Q92900 1129 aaKnown RBP eCLIP19.41■□□□□ 0.7
CAPN1-223ENST00000533079 C19orf44Q9H6X5 657 aa19.41■□□□□ 0.7
CAPN1-223ENST00000533079 C14orf37Q86TY3 774 aa19.4■□□□□ 0.7
CAPN1-223ENST00000533079 ATF3P18847 181 aa19.39■□□□□ 0.69
CAPN1-223ENST00000533079 E9PCH4 1651 aa19.39■□□□□ 0.69
CAPN1-223ENST00000533079 NHSL1Q5SYE7 1610 aa19.37■□□□□ 0.69
CAPN1-223ENST00000533079 IQGAP3Q86VI3 1631 aa19.37■□□□□ 0.69
CAPN1-223ENST00000533079 ASXL1Q8IXJ9 1541 aa19.37■□□□□ 0.69
CAPN1-223ENST00000533079 XRN1Q8IZH2 1706 aaKnown RBP19.37■□□□□ 0.69
CAPN1-223ENST00000533079 SETD5Q9C0A6 1442 aa19.35■□□□□ 0.69
CAPN1-223ENST00000533079 RXRBP28702 533 aa19.35■□□□□ 0.69
CAPN1-223ENST00000533079 TRIM52Q96A61 297 aa19.35■□□□□ 0.69
CAPN1-223ENST00000533079 LOC105371045A0A1W2PR82 267 aa19.34■□□□□ 0.69
CAPN1-223ENST00000533079 SETBP1Q9Y6X0 1596 aa19.34■□□□□ 0.69
CAPN1-223ENST00000533079 BRINP3Q76B58 766 aa19.33■□□□□ 0.68
CAPN1-223ENST00000533079 NRXN3Q9Y4C0 1643 aa19.31■□□□□ 0.68
CAPN1-223ENST00000533079 CHGAP10645 457 aaKnown RBP19.3■□□□□ 0.68
CAPN1-223ENST00000533079 MST1RQ04912 1400 aa19.3■□□□□ 0.68
CAPN1-223ENST00000533079 PTPRUQ92729 1446 aa19.3■□□□□ 0.68
CAPN1-223ENST00000533079 ROCK1Q13464 1354 aa19.29■□□□□ 0.68
CAPN1-223ENST00000533079 AMOTL2Q9Y2J4 779 aa19.28■□□□□ 0.68
CAPN1-223ENST00000533079 AFF2P51816 1311 aa19.27■□□□□ 0.68
CAPN1-223ENST00000533079 FAM50AQ14320 339 aaKnown RBP19.27■□□□□ 0.68
CAPN1-223ENST00000533079 RGS12O14924 1447 aa19.26■□□□□ 0.67
CAPN1-223ENST00000533079 LRRC59Q96AG4 307 aaKnown RBP19.25■□□□□ 0.67
CAPN1-223ENST00000533079 LAMC1P11047 1609 aa19.25■□□□□ 0.67
CAPN1-223ENST00000533079 ADGRL3Q9HAR2 1447 aa19.25■□□□□ 0.67
CAPN1-223ENST00000533079 NUTM2BA6NNL0 878 aaPredicted RBP19.24■□□□□ 0.67
CAPN1-223ENST00000533079 NUTM2EB1AL46 878 aaPredicted RBP19.24■□□□□ 0.67
CAPN1-223ENST00000533079 NUTM2DQ5VT03 806 aaPredicted RBP19.24■□□□□ 0.67
CAPN1-223ENST00000533079 NUTM2AQ8IVF1 878 aaPredicted RBP19.24■□□□□ 0.67
CAPN1-223ENST00000533079 SPHKAPQ2M3C7 1700 aa19.24■□□□□ 0.67
CAPN1-223ENST00000533079 NALCNQ8IZF0 1738 aa19.24■□□□□ 0.67
CAPN1-223ENST00000533079 PNPLA6Q8IY17 1366 aa19.22■□□□□ 0.67
CAPN1-223ENST00000533079 RBM6P78332 1123 aaKnown RBP19.21■□□□□ 0.67
CAPN1-223ENST00000533079 NUP155O75694 1391 aa19.18■□□□□ 0.66
CAPN1-223ENST00000533079 SRCAPQ6ZRS2 3230 aa19.17■□□□□ 0.66
CAPN1-223ENST00000533079 C8orf37Q96NL8 207 aa19.17■□□□□ 0.66
CAPN1-223ENST00000533079 ATAD2Q6PL18 1390 aa19.17■□□□□ 0.66
CAPN1-223ENST00000533079 PTCH1Q13635 1447 aa19.17■□□□□ 0.66
CAPN1-223ENST00000533079 NEXMIFQ5QGS0 1516 aa19.16■□□□□ 0.66
CAPN1-223ENST00000533079 NGLY1Q96IV0 654 aa19.16■□□□□ 0.66
CAPN1-223ENST00000533079 QTRT2Q9H974 415 aaKnown RBP19.16■□□□□ 0.66
CAPN1-223ENST00000533079 METP08581 1390 aa19.16■□□□□ 0.66
CAPN1-223ENST00000533079 PRAG1Q86YV5 1406 aa19.15■□□□□ 0.66
CAPN1-223ENST00000533079 FOXD1Q16676 465 aa19.14■□□□□ 0.65
CAPN1-223ENST00000533079 C1orf167Q5SNV9 1468 aa19.14■□□□□ 0.65
CAPN1-223ENST00000533079 COL22A1Q8NFW1 1626 aaPredicted RBP19.14■□□□□ 0.65
CAPN1-223ENST00000533079 CLTCL1P53675 1640 aa19.11■□□□□ 0.65
CAPN1-223ENST00000533079 ZNF326Q5BKZ1 582 aaKnown RBP19.1■□□□□ 0.65
CAPN1-223ENST00000533079 SOS2Q07890 1332 aaPredicted RBP19.09■□□□□ 0.65
CAPN1-223ENST00000533079 KIF1BO60333 1816 aa19.08■□□□□ 0.64
CAPN1-223ENST00000533079 EP400Q96L91 3159 aa19.08■□□□□ 0.64
CAPN1-223ENST00000533079 DDX17Q92841 729 aaKnown RBP19.07■□□□□ 0.64
CAPN1-223ENST00000533079 TRPC5Q9UL62 973 aaPredicted RBP19.07■□□□□ 0.64
CAPN1-223ENST00000533079 ATRNO75882 1429 aa19.07■□□□□ 0.64
CAPN1-223ENST00000533079 ADAMTS2O95450 1211 aa19.06■□□□□ 0.64
CAPN1-223ENST00000533079 USP21Q9UK80 565 aa19.06■□□□□ 0.64
CAPN1-223ENST00000533079 FNBP4Q8N3X1 1017 aaPredicted RBP19.05■□□□□ 0.64
CAPN1-223ENST00000533079 CDC42BPGQ6DT37 1551 aa19.05■□□□□ 0.64
CAPN1-223ENST00000533079 HFM1A2PYH4 1435 aa19.04■□□□□ 0.64
CAPN1-223ENST00000533079 MARF1Q9Y4F3 1742 aaKnown RBP19.04■□□□□ 0.64
CAPN1-223ENST00000533079 MYOM2P54296 1465 aa19.03■□□□□ 0.64
CAPN1-223ENST00000533079 CCDC125Q86Z20 511 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms